Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_15121 Corylus avellana HOM05D004136 ORTHO05D004817 1.1e-87 326.6 165 100.0
Cfa004279 Carpinus fangiana HOM05D004136 ORTHO05D004817 2.8e-80 302.0 195 81.5
CiPaw.01G034600 Carya illinoinensis HOM05D004136 ORTHO05D004817 2.5e-68 262.3 193 72.5
QL06p045366 Quercus lobata HOM05D004136 ORTHO05D004817 4.0e-66 255.0 193 68.4
Atru.chr3.535 Acer truncatum HOM05D004136 ORTHO05D004817 1.3e-56 223.4 194 59.8
TAR376G0015 Trochodendron aralioides HOM05D004136 ORTHO05D004817 2.9e-56 222.2 193 58.5
Glyma.11G065100 Glycine max HOM05D004136 ORTHO05D004817 3.2e-55 218.8 193 58.5
Phvul.002G027400 Phaseolus vulgaris HOM05D004136 ORTHO05D004817 5.4e-55 218.0 195 58.5
Potri.007G029300 Populus trichocarpa HOM05D004136 ORTHO05D004817 1.6e-54 216.5 196 58.2
TAR628G0800 Trochodendron aralioides HOM05D004136 ORTHO05D004817 3.5e-54 215.3 182 60.4
Glyma.01G177300 Glycine max HOM05D004136 ORTHO05D004817 1.3e-53 213.4 194 58.2
VMungo1215G0182 Vigna mungo HOM05D004136 ORTHO05D004817 3.0e-53 212.2 195 56.9
CANSAT01G2667 Cannabis sativa HOM05D004136 ORTHO05D004817 8.6e-53 210.7 194 55.7
RcHm_v2.0_Chr2g0102181 Rosa chinensis HOM05D004136 ORTHO05D004817 4.3e-52 208.4 193 58.5
CSS0034503 Camellia sinensis var. sinensis HOM05D004136 ORTHO05D004817 6.2e-51 204.5 181 60.2
Hma1.2p1_0652F.1_g195840 Hydrangea macrophylla HOM05D004136 ORTHO05D004817 4.0e-50 201.8 195 55.4
Prupe.7G150800 Prunus persica HOM05D004136 ORTHO05D004817 5.2e-50 201.4 193 56.5
Cpa.g.sc158.6 Carica papaya HOM05D004136 ORTHO05D004817 6.8e-50 201.1 194 56.7
Nn5g29529 Nelumbo nucifera HOM05D004136 ORTHO05D004817 1.2e-49 200.3 194 54.1
Lj2g0019230 Lotus japonicus HOM05D004136 ORTHO05D004817 1.5e-49 199.9 195 56.4
Thecc.01G039800 Theobroma cacao HOM05D004136 ORTHO05D004817 3.4e-49 198.7 193 54.4
FAN26G1434 Fragaria x ananassa HOM05D004136 ORTHO05D004817 4.4e-49 198.4 193 56.5
FAN23G0822 Fragaria x ananassa HOM05D004136 ORTHO05D004817 1.3e-48 196.8 193 56.5
Lalb_Chr05g0212951 Lupinus albus HOM05D004136 ORTHO05D004817 1.7e-48 196.4 196 55.6
Sed0013019 Sechium edule HOM05D004136 ORTHO05D004817 1.7e-48 196.4 193 51.8
Sabra07G0025200 Salix brachista HOM05D004136 ORTHO05D004817 2.2e-48 196.1 184 57.1
Manes.13G137000 Manihot esculenta HOM05D004136 ORTHO05D004817 2.9e-48 195.7 184 54.3
arahy.Tifrunner.gnm1.ann1.KSUC5C Arachis hypogaea HOM05D001320 ORTHO05D006314 3.7e-48 195.3 218 51.4
MBI16_g35701_MAGBIO Magnolia biondii HOM05D004136 ORTHO05D004817 3.7e-48 195.3 196 53.1
RcHm_v2.0_Chr6g0263171 Rosa chinensis HOM05D004136 ORTHO05D004817 6.4e-48 194.5 184 54.3
FAN28G1223 Fragaria x ananassa HOM05D004136 ORTHO05D004817 1.1e-47 193.7 205 52.7
Actinidia00515 Actinidia chinensis HOM05D004136 ORTHO05D004817 1.9e-47 193.0 183 54.1
GSVIVG01031926001 Vitis vinifera HOM05D004136 ORTHO05D004817 9.2e-47 190.7 181 55.8
Sc18g0004640 Simmondsia chinensis HOM05D004136 ORTHO05D004817 2.1e-46 189.5 194 51.5
PGR119G1684 Punica granatum HOM05D004136 ORTHO05D004817 2.7e-46 189.1 197 51.3
Cc02_g17820 Coffea canephora HOM05D004136 ORTHO05D004817 6.0e-46 188.0 194 53.1
vmacro02133 Vaccinium macrocarpon HOM05D004136 ORTHO05D004817 6.0e-46 188.0 197 52.3
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 1.3e-45 186.8 191 52.4
HanXRQChr08g0216581 Helianthus annuus HOM05D004136 ORTHO05D004817 1.7e-45 186.4 195 52.3
MD10G1080600 Malus domestica HOM05D004136 ORTHO05D004817 1.7e-45 186.4 184 53.3
vmacro19436 Vaccinium macrocarpon HOM05D004136 ORTHO05D004817 1.7e-45 186.4 215 50.2
CSS0025580 Camellia sinensis var. sinensis HOM05D004136 ORTHO05D004817 3.0e-45 185.7 181 53.0
Nitab4.5_0005152g0080 Nicotiana tabacum HOM05D004136 ORTHO05D004817 3.0e-45 185.7 183 53.0
Duzib187G0328 Durio zibethinus HOM05D004136 ORTHO05D004817 3.9e-45 185.3 193 53.4
EL10Ac9g21751 Beta vulgaris HOM05D004136 ORTHO05D004817 8.6e-45 184.1 191 50.3
Aqoxy6G01036 Aquilegia oxysepala HOM05D004136 ORTHO05D004817 1.1e-44 183.7 193 50.8
Nn1g05079 Nelumbo nucifera HOM05D004136 ORTHO05D004817 1.1e-44 183.7 193 50.3
Nitab4.5_0001361g0200 Nicotiana tabacum HOM05D004136 ORTHO05D004817 1.5e-44 183.3 183 51.4
CARHR245070 Cardamine hirsuta HOM05D004136 ORTHO05D004817 1.9e-44 183.0 193 50.3
Rhsim11G0174000 Rhododendron simsii HOM05D004136 ORTHO05D004817 1.9e-44 183.0 210 48.6
TPR.G18804 Trifolium pratense HOM05D004136 ORTHO05D004817 1.9e-44 183.0 192 51.0
Sp7g34380 Schrenkiella parvula HOM05D004136 ORTHO05D004817 2.5e-44 182.6 201 49.8
Psat2g161160 Pisum sativum HOM05D004136 ORTHO05D004817 3.3e-44 182.2 194 51.5
Thhalv10026250m.g Eutrema salsugineum HOM05D004136 ORTHO05D004817 5.6e-44 181.4 198 50.0
arahy.Tifrunner.gnm1.ann1.65EKU6 Arachis hypogaea HOM05D004136 ORTHO05D004817 9.5e-44 180.6 249 45.8
Gohir.A10G094600 Gossypium hirsutum HOM05D004136 ORTHO05D004817 9.5e-44 180.6 193 50.3
Medtr5g019720 Medicago truncatula HOM05D004136 ORTHO05D004817 9.5e-44 180.6 194 50.5
Sed0010733 Sechium edule HOM05D004136 ORTHO05D004817 9.5e-44 180.6 158 58.9
Migut.B00258 Erythranthe guttata HOM05D004136 ORTHO05D004817 1.2e-43 180.3 195 49.7
Peaxi162Scf00003g01333 Petunia axillaris HOM05D004136 ORTHO05D004817 1.2e-43 180.3 183 51.4
ClCG01G019370 Citrullus lanatus HOM05D004136 ORTHO05D004817 1.6e-43 179.9 193 52.8
Duzib248G0461 Durio zibethinus HOM05D004136 ORTHO05D004817 1.6e-43 179.9 185 50.8
Thecc.02G122900 Theobroma cacao HOM05D004136 ORTHO05D004817 1.6e-43 179.9 187 50.3
Peaxi162Scf00089g00243 Petunia axillaris HOM05D004136 ORTHO05D004817 2.1e-43 179.5 195 50.8
Potri.009G113400 Populus trichocarpa HOM05D004136 ORTHO05D004817 2.1e-43 179.5 181 51.9
QL11p042830 Quercus lobata HOM05D004136 ORTHO05D004817 2.1e-43 179.5 176 55.1
Gorai.011G102500 Gossypium raimondii HOM05D004136 ORTHO05D004817 4.7e-43 178.3 193 49.7
Lsat_1_v5_gn_9_109341 Lactuca sativa HOM05D004136 ORTHO05D004817 4.7e-43 178.3 194 50.0
COL.COLO4_22117 Corchorus olitorius HOM05D004136 ORTHO05D004817 6.2e-43 177.9 193 49.2
HanXRQChr04g0127871 Helianthus annuus HOM05D004136 ORTHO05D004817 6.2e-43 177.9 172 53.5
Hma1.2p1_3707F.1_g337330 Hydrangea macrophylla HOM05D004136 ORTHO05D004817 6.2e-43 177.9 215 48.4
AT4G36720 Arabidopsis thaliana HOM05D004136 ORTHO05D004817 1.1e-42 177.2 193 49.7
Carub.0007s0360 Capsella rubella HOM05D004136 ORTHO05D004817 1.1e-42 177.2 196 48.5
PGSC0003DMG400033909 Solanum tuberosum HOM05D004136 ORTHO05D004817 1.4e-42 176.8 183 49.2
BcaB03g12374 Brassica carinata HOM05D004136 ORTHO05D004817 1.8e-42 176.4 197 47.7
BolC7t46611H Brassica oleracea HOM05D004136 ORTHO05D004817 2.3e-42 176.0 193 48.2
DCAR_022101 Daucus carota HOM05D004136 ORTHO05D004817 2.3e-42 176.0 193 49.7
C03p79930 Brassica napus HOM05D004136 ORTHO05D004817 4.0e-42 175.3 199 48.2
Atru.chr5.2955 Acer truncatum HOM05D004136 ORTHO05D004817 6.8e-42 174.5 187 49.2
BcaC01g00446 Brassica carinata HOM05D004136 ORTHO05D004817 6.8e-42 174.5 199 48.2
BolC3t20246H Brassica oleracea HOM05D004136 ORTHO05D004817 6.8e-42 174.5 199 48.2
A08p22370 Brassica napus HOM05D004136 ORTHO05D004817 8.9e-42 174.1 200 47.0
BraA08t34194Z Brassica rapa HOM05D004136 ORTHO05D004817 8.9e-42 174.1 200 47.0
FvH4_2g08300 Fragaria vesca HOM05D004136 ORTHO05D004817 1.2e-41 173.7 183 51.4
FAN15G1236 Fragaria x ananassa HOM05D004136 ORTHO05D004817 1.2e-41 173.7 183 50.8
Gohir.D10G093300 Gossypium hirsutum HOM05D004136 ORTHO05D004817 1.2e-41 173.7 159 56.0
AUR62011354 Chenopodium quinoa HOM05D004136 ORTHO05D004817 1.5e-41 173.3 197 49.2
Eucgr.I01252 Eucalyptus grandis HOM05D004136 ORTHO05D004817 1.5e-41 173.3 187 47.6
Solyc10g051300.2 Solanum lycopersicum HOM05D004136 ORTHO05D004817 1.5e-41 173.3 183 48.6
Sopen10g022980 Solanum pennellii HOM05D004136 ORTHO05D004817 1.5e-41 173.3 183 48.6
Aa31LG6G13530 Aethionema arabicum HOM05D004136 ORTHO05D004817 4.4e-41 171.8 194 48.5
MSTRG.20103 Avicennia marina HOM05D004136 ORTHO05D004817 4.4e-41 171.8 195 48.7
CAN.G352.59 Capsicum annuum HOM05D004136 ORTHO05D004817 7.6e-41 171.0 195 49.2
Nitab4.5_0001311g0020 Nicotiana tabacum HOM05D004136 ORTHO05D004817 7.6e-41 171.0 181 52.5
Hund00289 Selenicereus undatus HOM05D004136 ORTHO05D004817 7.6e-41 171.0 193 46.1
A01p02190 Brassica napus HOM05D004136 ORTHO05D004817 1.7e-40 169.9 201 46.3
CsaV3_6G046090 Cucumis sativus L. HOM05D004136 ORTHO05D004817 1.7e-40 169.9 180 50.0
Ciclev10029342m.g Citrus clementina HOM05D004136 ORTHO05D004817 2.2e-40 169.5 186 46.8
Nitab4.5_0011188g0010 Nicotiana tabacum HOM05D004136 ORTHO05D004817 2.2e-40 169.5 181 51.4
PSO675G6408 Papaver somniferum HOM05D004136 ORTHO05D004817 2.2e-40 169.5 186 47.3
Cpa.g.sc62.117 Carica papaya HOM05D004136 ORTHO05D004817 3.8e-40 168.7 184 47.8
Ah.01g019590 Amaranthus hybridus HOM05D004136 ORTHO05D004817 4.9e-40 168.3 203 45.8
ATR0733G067 Amborella trichopoda HOM05D004136 ORTHO05D004817 4.9e-40 168.3 158 57.0
AUR62016708 Chenopodium quinoa HOM05D004136 ORTHO05D004817 4.9e-40 168.3 199 46.2
CDE04G1766 Ceratophyllum demersum HOM05D004136 ORTHO05D004817 6.4e-40 167.9 170 50.6
Gohir.A03G179700 Gossypium hirsutum HOM05D004136 ORTHO05D004817 6.4e-40 167.9 185 45.9
Gorai.005G228600 Gossypium raimondii HOM05D004136 ORTHO05D004817 6.4e-40 167.9 185 46.5
BcaNung00706 Brassica carinata HOM05D004136 ORTHO05D004817 1.1e-39 167.2 199 46.2
C01p02380 Brassica napus HOM05D004136 ORTHO05D004817 1.1e-39 167.2 199 46.2
Lj5A200T57 Lonicera japonica HOM05D004136 ORTHO05D004817 1.1e-39 167.2 147 58.5
Solyc03g110920.2 Solanum lycopersicum HOM05D004136 ORTHO05D004817 1.1e-39 167.2 195 48.2
BcaNung04434 Brassica carinata HOM05D004136 ORTHO05D004817 1.4e-39 166.8 201 45.3
BraA01t00208Z Brassica rapa HOM05D001320 ORTHO05D006314 1.4e-39 166.8 201 44.8
ECA236G4692 Erigeron canadensis HOM05D000001 ORTHO05D009502 1.4e-39 166.8 172 50.0
Gohir.A04G117200 Gossypium hirsutum HOM05D004136 ORTHO05D004817 1.9e-39 166.4 188 46.8
Lsat_1_v5_gn_9_109361 Lactuca sativa HOM05D004136 ORTHO05D004817 2.4e-39 166.0 194 47.4
arahy.Tifrunner.gnm1.ann1.QP0UED Arachis hypogaea HOM05D004136 ORTHO05D004817 3.2e-39 165.6 185 48.6
Gorai.012G146300 Gossypium raimondii HOM05D004136 ORTHO05D004817 3.2e-39 165.6 188 46.8
Manes.15G167200 Manihot esculenta HOM05D004136 ORTHO05D004817 3.2e-39 165.6 182 47.8
FAN20G0668 Fragaria x ananassa HOM05D004136 ORTHO05D004817 4.1e-39 165.2 183 49.2
Dinv23548 Davidia involucrata HOM05D004136 ORTHO05D004817 5.4e-39 164.9 152 57.9
SalBow6G5424 Salvia bowleyana HOM05D004136 ORTHO05D004817 1.6e-38 163.3 183 48.1
THA.LOC104807547 Tarenaya hassleriana HOM05D004136 ORTHO05D004817 2.7e-38 162.5 196 43.4
Gohir.D02G202933 Gossypium hirsutum HOM05D004136 ORTHO05D004817 3.5e-38 162.2 185 45.9
Gohir.D04G158900 Gossypium hirsutum HOM05D004136 ORTHO05D004817 3.5e-38 162.2 183 47.0
GSVIVG01019007001 Vitis vinifera HOM05D004136 ORTHO05D004817 6.0e-38 161.4 135 64.4
FAN19G3158 Fragaria x ananassa HOM05D004136 ORTHO05D004817 1.7e-37 159.8 206 48.1
Lsat_1_v5_gn_7_89700 Lactuca sativa HOM05D004136 ORTHO05D004817 1.7e-37 159.8 162 50.6
Zm00001eb148430 Zea mays HOM05D004136 ORTHO05D004817 3.9e-37 158.7 184 44.6
C07p61890 Brassica napus HOM05D004136 ORTHO05D004817 8.6e-37 157.5 186 45.7
MELO3C007812.2 Cucumis melo HOM05D004136 ORTHO05D004817 1.1e-36 157.1 148 55.4
SalBow6G6921 Salvia bowleyana HOM05D004136 ORTHO05D004817 1.5e-36 156.8 180 47.8
Sopen03g030110 Solanum pennellii HOM05D004136 ORTHO05D004817 4.3e-36 155.2 184 47.8
TWI75G1726 Tripterygium wilfordii HOM05D004136 ORTHO05D004817 4.3e-36 155.2 173 47.4
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 1.2e-35 153.7 186 46.2
TWI75G0712 Tripterygium wilfordii HOM05D004136 ORTHO05D004817 1.6e-35 153.3 222 42.3
Glyma.12G044900 Glycine max HOM05D004136 ORTHO05D004817 1.4e-34 150.2 180 46.1
Glyma.11G119700 Glycine max HOM05D004136 ORTHO05D004817 1.8e-34 149.8 183 45.4
Os07g0568400 Oryza sativa ssp. japonica HOM05D004136 ORTHO05D004817 1.8e-34 149.8 187 43.9
FvH4_1g13870 Fragaria vesca HOM05D004136 ORTHO05D004817 3.1e-34 149.1 148 53.4
DCAR_017235 Daucus carota HOM05D004136 ORTHO05D004817 2.0e-33 146.4 194 41.8
HPP92_007890 Vanilla planifolia HOM05D004136 ORTHO05D004817 7.6e-33 144.4 197 40.1
HPP92_007875 Vanilla planifolia HOM05D004136 ORTHO05D004817 4.9e-32 141.7 197 39.1
Prupe.8G101900 Prunus persica HOM05D004136 ORTHO05D004817 8.4e-32 141.0 162 46.3
VMungo1127G1479 Vigna mungo HOM05D004136 ORTHO05D004817 1.4e-31 140.2 180 44.4
Phvul.011G046900 Phaseolus vulgaris HOM05D004136 ORTHO05D004817 2.7e-30 136.0 181 44.2
PSO541G5216 Papaver somniferum HOM05D004136 ORTHO05D004817 3.5e-30 135.6 136 51.5
Sabra09G0086700 Salix brachista HOM05D004136 ORTHO05D004817 3.0e-29 132.5 277 32.5
Mapoly0166s0019 Marchantia polymorpha HOM05D004136 ORTHO05D004817 6.6e-29 131.3 194 40.2
AagrBONN_evm.TU.Sc2ySwM_344.5399 Anthoceros agrestis HOM05D004136 ORTHO05D004817 6.9e-26 121.3 181 40.9
MD15G1266600 Malus domestica HOM05D004136 ORTHO05D004817 1.2e-25 120.6 121 49.6
SGA_v2.0_scaffold58G20560 Striga asiatica HOM05D000001 ORTHO05D009502 2.6e-25 119.4 161 39.1
SEGI_19820 Sequoiadendron giganteum HOM05D004136 ORTHO05D004817 9.9e-25 117.5 181 37.0
Hma1.2p1_0066F.1_g036680 Hydrangea macrophylla HOM05D004136 ORTHO05D004817 6.4e-24 114.8 61 86.9
Nn5g29530 Nelumbo nucifera HOM05D004136 ORTHO05D004817 3.2e-23 112.5 63 82.5
Pp3c2_21660 Physcomitrium patens HOM05D004136 ORTHO05D004817 7.1e-23 111.3 154 39.0
A03p64470 Brassica napus HOM05D004136 ORTHO05D004817 3.0e-21 105.9 111 49.5
arahy.Tifrunner.gnm1.ann1.4DKU0T Arachis hypogaea HOM05D004136 ORTHO05D004817 6.7e-21 104.8 64 75.0
CAN.G1.45 Capsicum annuum HOM05D004136 ORTHO05D004817 1.9e-20 103.2 61 77.0
SGA_v2.0_scaffold32G13150 Striga asiatica HOM05D004136 ORTHO05D004817 2.5e-20 102.8 208 35.1
Glyma.19G024600 Glycine max HOM05D004136 ORTHO05D004817 6.2e-19 98.2 62 74.2
SMO140G0008 Selaginella moellendorffii HOM05D004136 ORTHO05D004817 3.1e-18 95.9 163 31.3
SMO215G0008 Selaginella moellendorffii HOM05D004136 ORTHO05D004817 5.3e-18 95.1 166 30.7
AL7G14290 Arabidopsis lyrata HOM05D004136 ORTHO05D004817 5.8e-17 91.7 136 37.5
Ciclev10033473m.g Citrus clementina HOM05D004136 ORTHO05D004817 5.8e-17 91.7 115 44.3
Actinidia22486 Actinidia chinensis HOM05D004136 ORTHO05D004817 3.8e-16 89.0 94 46.8
PGSC0003DMG401015201 Solanum tuberosum HOM05D004136 ORTHO05D004817 1.6e-14 83.6 58 62.1
FAN24G1607 Fragaria x ananassa HOM05D004136 ORTHO05D004817 2.7e-14 82.8 91 47.3
Oeu014332.1 Olea europaea HOM05D004136 ORTHO05D004817 4.3e-12 75.5 92 39.1
Ciclev10026788m.g Citrus clementina HOM05D004136 ORTHO05D151648 6.2e-11 71.6 95 45.3
SMO114G0054 Selaginella moellendorffii HOM05D004136 ORTHO05D004817 5.8e-09 65.1 102 33.3
PGSC0003DMG402015201 Solanum tuberosum HOM05D004136 ORTHO05D004817 3.5e-06 55.8 74 40.5


User provided reference genes

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