Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 0.0e+00 1614.0 800 100.0
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1303.1 884 78.1
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1096.6 885 66.4
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 4.4e-296 1021.1 909 61.6
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 8.7e-292 1006.9 879 60.2
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 9.6e-291 1003.4 861 59.3
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 4.0e-289 998.0 878 60.0
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 2.6e-288 995.3 861 59.3
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 3.4e-288 995.0 882 59.1
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 4.5e-288 994.6 879 58.1
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 5.6e-283 977.6 880 57.8
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 9.6e-283 976.9 895 58.4
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 6.9e-281 970.7 881 58.3
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 1.3e-279 966.5 886 57.8
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 2.2e-279 965.7 877 57.4
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 2.4e-278 962.2 884 57.6
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 2.7e-277 958.7 885 56.4
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 1.5e-275 953.0 879 58.0
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 7.4e-275 950.7 889 56.2
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 2.1e-274 949.1 881 56.5
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 1.4e-273 946.4 884 57.1
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 7.6e-272 940.6 884 56.0
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 2.9e-271 938.7 889 56.4
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 6.5e-271 937.6 885 56.2
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 1.4e-270 936.4 884 56.3
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 5.5e-270 934.5 880 55.7
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 9.3e-270 933.7 878 56.7
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 9.3e-270 933.7 884 56.3
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 1.2e-269 933.3 884 56.4
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 5.1e-268 927.9 884 55.7
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 1.9e-267 926.0 859 57.4
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 2.8e-266 922.2 880 56.0
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 2.4e-265 919.1 886 55.3
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 2.4e-265 919.1 917 55.2
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 9.0e-265 917.1 882 55.2
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 2.9e-263 912.1 885 54.9
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 8.5e-263 910.6 841 57.4
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 1.4e-262 909.8 885 54.7
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 1.4e-262 909.8 882 55.0
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 2.7e-261 905.6 869 55.1
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 5.1e-260 901.4 879 54.0
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 2.5e-259 899.0 883 55.7
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 6.3e-258 894.4 879 53.1
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 5.9e-256 887.9 879 53.4
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 5.0e-255 884.8 912 53.5
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 1.1e-254 883.6 879 53.1
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 1.1e-254 883.6 881 55.1
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 1.1e-254 883.6 892 53.8
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 1.4e-254 883.2 936 51.2
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 1.4e-252 876.7 879 52.4
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 1.1e-251 873.6 878 52.8
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 1.1e-251 873.6 881 54.5
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 3.3e-251 872.1 882 53.2
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 3.7e-250 868.6 878 52.5
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 4.8e-250 868.2 866 53.7
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 4.8e-250 868.2 888 54.2
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 1.4e-249 866.7 878 52.1
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 4.1e-249 865.1 878 52.7
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 4.1e-249 865.1 878 52.7
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 5.9e-248 861.3 998 48.9
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 2.9e-247 859.0 880 54.0
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 4.5e-240 835.1 907 49.6
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 5.9e-240 834.7 864 52.0
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 2.2e-239 832.8 884 51.4
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 3.8e-239 832.0 878 50.3
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 9.4e-238 827.4 885 51.2
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 2.1e-237 826.2 905 52.2
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 4.7e-237 825.1 887 51.4
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 2.3e-236 822.8 908 49.9
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 5.7e-235 818.1 880 50.0
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 4.8e-234 815.1 879 49.3
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 2.4e-233 812.8 919 49.4
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 4.1e-233 812.0 879 50.5
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 5.0e-231 805.1 937 47.6
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 5.5e-230 801.6 917 49.0
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 3.0e-228 795.8 831 51.6
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 9.8e-227 790.8 930 48.0
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 2.2e-226 789.6 886 48.6
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 8.6e-223 777.7 863 49.4
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 1.6e-221 773.5 881 47.3
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 6.1e-221 771.5 879 47.9
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 6.8e-220 768.1 879 47.7
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 3.7e-218 762.3 887 48.0
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 2.4e-217 759.6 888 47.6
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 2.0e-216 756.5 880 47.2
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 2.7e-216 756.1 883 48.6
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 1.1e-214 750.7 868 48.3
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 1.5e-214 750.4 949 45.0
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 1.8e-212 743.4 702 55.0
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 6.8e-212 741.5 861 48.0
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 9.5e-206 721.1 878 46.4
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 1.6e-205 720.3 1015 43.1
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 1.2e-184 651.0 833 44.4
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 6.0e-184 648.7 661 53.0
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 6.0e-176 622.1 854 41.2
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 2.9e-162 576.6 839 42.3
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 6.7e-159 565.5 713 45.2
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 9.7e-150 535.0 682 44.7
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 2.0e-142 510.8 468 59.2
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 3.1e-140 503.4 474 54.2
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 9.1e-140 501.9 361 67.6
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 4.5e-139 499.6 432 56.7
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 2.9e-138 496.9 696 40.1
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 4.2e-137 493.0 868 35.9
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 3.2e-129 466.8 352 63.1
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 4.2e-129 466.5 839 37.7
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 3.0e-127 460.3 509 50.7
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 1.1e-126 458.4 388 65.2
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 1.8e-124 451.1 789 38.5
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 1.8e-119 434.5 440 52.7
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 4.5e-115 419.9 837 32.4
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 2.3e-106 391.0 678 35.0
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.8e-103 381.3 669 37.2
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 4.0e-103 380.2 351 52.7
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 1.1e-97 362.1 794 31.2
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 2.8e-96 357.5 299 62.5
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 2.3e-82 311.2 298 53.7
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.5e-81 308.5 257 60.3
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 2.7e-75 287.7 235 61.3
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 2.5e-65 254.6 679 28.4
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 6.0e-59 233.4 166 63.3
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 2.1e-51 208.4 190 56.8
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 3.5e-51 207.6 243 49.8
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 1.6e-48 198.7 202 53.0
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 1.1e-47 196.1 249 45.8
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 2.0e-46 191.8 148 64.2
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 1.9e-44 185.3 262 42.7
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 2.5e-44 184.9 142 64.1
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 8.2e-40 169.9 873 24.3
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 8.7e-34 149.8 211 41.2
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 6.9e-31 140.2 124 59.7
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 5.9e-30 137.1 194 40.2
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 3.8e-29 134.4 162 42.0
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 1.2e-27 129.4 942 22.4
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 4.6e-27 127.5 200 39.5
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 2.8e-24 118.2 74 79.7
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 1.8e-23 115.5 80 68.8
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 5.5e-20 104.0 75 69.3
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 2.3e-18 98.6 255 30.2
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 3.3e-17 94.7 94 55.3
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 1.7e-16 92.4 511 22.1
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 2.8e-16 91.7 140 42.1
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 8.2e-16 90.1 117 44.4
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 4.1e-15 87.8 54 75.9
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 3.6e-11 74.7 70 52.9
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 3.3e-09 68.2 49 67.3
Psat0s2980g0040 Pisum sativum HOM05D000709 ORTHO05D002401 2.2e-08 65.5 101 42.6


User provided reference genes

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