Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_15046 Corylus avellana HOM05D003540 ORTHO05D004012 5.0e-114 414.5 209 100.0
CiPaw.01G047900 Carya illinoinensis HOM05D003540 ORTHO05D004012 3.2e-44 182.6 180 58.3
Thecc.01G093400 Theobroma cacao HOM05D003540 ORTHO05D004012 1.7e-37 160.2 180 52.2
COL.COLO4_27316 Corchorus olitorius HOM05D003540 ORTHO05D004012 3.5e-35 152.5 180 50.0
Gohir.A11G205600 Gossypium hirsutum HOM05D003540 ORTHO05D004012 1.0e-34 151.0 180 49.4
Gorai.007G236000 Gossypium raimondii HOM05D003540 ORTHO05D004012 1.0e-34 151.0 180 49.4
Gohir.D11G218000 Gossypium hirsutum HOM05D003540 ORTHO05D004012 1.7e-34 150.2 180 49.4
TWI74G0452 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 1.9e-33 146.7 180 47.8
GSVIVG01003618001 Vitis vinifera HOM05D003540 ORTHO05D004012 1.6e-32 143.7 180 47.2
CSS0040126 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 9.0e-31 137.9 179 45.3
Aqoxy6G00672 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 4.5e-30 135.6 179 44.7
TAR625G0842 Trochodendron aralioides HOM05D003540 ORTHO05D004012 4.5e-30 135.6 179 45.3
vmacro04682 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 7.6e-30 134.8 179 44.7
Aqoxy1G03155 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 9.9e-30 134.4 179 44.1
CSS0047709 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 2.4e-28 129.8 178 42.7
Rhsim06G0075200 Rhododendron simsii HOM05D003540 ORTHO05D004012 3.2e-28 129.4 179 41.9
Rhsim07G0209200 Rhododendron simsii HOM05D003540 ORTHO05D004012 1.2e-27 127.5 179 41.3
MBI02_g18294_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 7.9e-27 124.8 179 42.5
Sed0022834 Sechium edule HOM05D003540 ORTHO05D004012 7.9e-27 124.8 177 41.2
Hma1.2p1_0961F.1_g241695 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 1.0e-26 124.4 174 43.1
Hma1.2p1_0961F.1_g241710 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 1.0e-26 124.4 174 43.1
Zm00001eb325480 Zea mays HOM05D003540 ORTHO05D004012 2.3e-26 123.2 180 43.9
Os07g0577900 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 3.0e-26 122.9 180 43.3
Potri.005G159600 Populus trichocarpa HOM05D003540 ORTHO05D004012 3.0e-26 122.9 179 40.8
Peaxi162Scf00725g00536 Petunia axillaris HOM05D003540 ORTHO05D004012 3.9e-26 122.5 179 41.3
Dinv44828 Davidia involucrata HOM05D003540 ORTHO05D004012 5.1e-26 122.1 179 40.8
CANSAT25G0001 Cannabis sativa HOM05D003540 ORTHO05D004012 6.7e-26 121.7 179 40.2
MBI06_g18789_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 6.7e-26 121.7 177 42.4
Oeu013165.1 Olea europaea HOM05D003540 ORTHO05D004012 6.7e-26 121.7 183 41.0
Zm00001eb107620 Zea mays HOM05D003540 ORTHO05D004012 6.7e-26 121.7 180 43.9
Sabra05G0121300 Salix brachista HOM05D003540 ORTHO05D004012 1.9e-25 120.2 177 39.5
GSVIVG01009122001 Vitis vinifera HOM05D003540 ORTHO05D004012 1.9e-25 120.2 179 39.7
EL10Ac3g06094 Beta vulgaris HOM05D003540 ORTHO05D004012 3.3e-25 119.4 179 39.7
ECA247G1419 Erigeron canadensis HOM05D003540 ORTHO05D004012 3.3e-25 119.4 179 41.3
Prupe.1G526600 Prunus persica HOM05D003540 ORTHO05D004012 3.3e-25 119.4 177 39.0
Sc23g0000530 Simmondsia chinensis HOM05D003540 ORTHO05D004012 5.6e-25 118.6 179 41.3
Cpa.g.sc36.201 Carica papaya HOM05D003540 ORTHO05D004012 7.4e-25 118.2 179 40.2
Solyc04g074940.4 Solanum lycopersicum HOM05D003540 ORTHO05D004012 7.4e-25 118.2 207 38.6
CSS0040517 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 9.6e-25 117.9 176 40.9
Eucgr.F00400 Eucalyptus grandis HOM05D003540 ORTHO05D004012 9.6e-25 117.9 177 39.0
Sed0006262 Sechium edule HOM05D003540 ORTHO05D004012 9.6e-25 117.9 175 39.4
Thecc.08G066000 Theobroma cacao HOM05D003540 ORTHO05D004012 9.6e-25 117.9 177 40.1
BraA07t28888Z Brassica rapa HOM05D003540 ORTHO05D004012 1.3e-24 117.5 179 39.7
ECA234G0792 Erigeron canadensis HOM05D003540 ORTHO05D004012 1.3e-24 117.5 179 40.8
Peaxi162Scf00139g00825 Petunia axillaris HOM05D003540 ORTHO05D004012 1.3e-24 117.5 175 40.6
BcaC06g35396 Brassica carinata HOM05D003540 ORTHO05D004012 1.6e-24 117.1 179 39.7
CAN.G460.5 Capsicum annuum HOM05D003540 ORTHO05D004012 1.6e-24 117.1 179 39.1
Oeu024713.1 Olea europaea HOM05D003540 ORTHO05D004012 1.6e-24 117.1 183 39.9
MELO3C003542.2 Cucumis melo HOM05D003540 ORTHO05D004012 2.1e-24 116.7 179 39.1
Gohir.D06G033200 Gossypium hirsutum HOM05D003540 ORTHO05D004012 2.1e-24 116.7 179 39.7
Gorai.010G036600 Gossypium raimondii HOM05D003540 ORTHO05D004012 2.1e-24 116.7 179 39.7
Hund16878 Selenicereus undatus HOM05D003540 ORTHO05D004012 2.1e-24 116.7 182 40.1
Sopen04g029890 Solanum pennellii HOM05D003540 ORTHO05D004012 2.1e-24 116.7 179 39.7
A07p10970 Brassica napus HOM05D003540 ORTHO05D004012 2.8e-24 116.3 179 39.7
BcaB03g13908 Brassica carinata HOM05D003540 ORTHO05D004012 3.7e-24 115.9 179 39.1
CiPaw.07G169400 Carya illinoinensis HOM05D003540 ORTHO05D004012 3.7e-24 115.9 179 39.1
HanXRQChr08g0226211 Helianthus annuus HOM05D003540 ORTHO05D004012 3.7e-24 115.9 179 39.7
Lj1g0000615 Lotus japonicus HOM05D003540 ORTHO05D004012 3.7e-24 115.9 179 43.0
CARHR028280 Cardamine hirsuta HOM05D003540 ORTHO05D004012 4.8e-24 115.5 179 39.7
Sp1g25000 Schrenkiella parvula HOM05D003540 ORTHO05D004012 4.8e-24 115.5 179 39.1
COL.COLO4_11964 Corchorus olitorius HOM05D003540 ORTHO05D004012 6.2e-24 115.2 179 39.7
CAN.G1538.2 Capsicum annuum HOM05D003540 ORTHO05D004012 8.1e-24 114.8 179 38.5
CDE05G3432 Ceratophyllum demersum HOM05D003540 ORTHO05D004012 8.1e-24 114.8 180 40.0
PGSC0003DMG401002119 Solanum tuberosum HOM05D003540 ORTHO05D004012 8.1e-24 114.8 179 38.5
Duzib093G0958 Durio zibethinus HOM05D003540 ORTHO05D004012 1.1e-23 114.4 179 39.7
Carub.0001s2726 Capsella rubella HOM05D003540 ORTHO05D004012 1.4e-23 114.0 179 39.7
Migut.D01990 Erythranthe guttata HOM05D003540 ORTHO05D004012 1.4e-23 114.0 183 39.3
Thhalv10009065m.g Eutrema salsugineum HOM05D003540 ORTHO05D004012 1.4e-23 114.0 179 38.5
Gohir.A06G032664 Gossypium hirsutum HOM05D003540 ORTHO05D004012 1.4e-23 114.0 177 39.0
HanXRQChr02g0046851 Helianthus annuus HOM05D003540 ORTHO05D004012 1.4e-23 114.0 179 40.2
Ciclev10002815m.g Citrus clementina HOM05D003540 ORTHO05D004012 1.8e-23 113.6 179 39.7
Duzib116G0544 Durio zibethinus HOM05D003540 ORTHO05D004012 1.8e-23 113.6 176 39.8
Potri.002G102400 Populus trichocarpa HOM05D003540 ORTHO05D004012 1.8e-23 113.6 179 39.1
THA.LOC104820588 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 2.4e-23 113.2 179 36.3
AL7G41530 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 3.1e-23 112.8 179 39.1
MD15G1380400 Malus domestica HOM05D003540 ORTHO05D004012 3.1e-23 112.8 175 39.4
Manes.18G062100 Manihot esculenta HOM05D003540 ORTHO05D004012 3.1e-23 112.8 179 38.5
HPP92_023309 Vanilla planifolia HOM05D003540 ORTHO05D004012 3.1e-23 112.8 186 40.9
AT4G14600 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 4.0e-23 112.5 179 38.5
BcaB07g32485 Brassica carinata HOM05D003540 ORTHO05D004012 4.0e-23 112.5 179 38.0
C03p75500 Brassica napus HOM05D003540 ORTHO05D004012 4.0e-23 112.5 179 38.0
Cc10_g15500 Coffea canephora HOM05D003540 ORTHO05D004012 4.0e-23 112.5 179 39.1
Nn1g05484 Nelumbo nucifera HOM05D003540 ORTHO05D004012 4.0e-23 112.5 200 36.5
BolC3t19806H Brassica oleracea HOM05D003540 ORTHO05D004012 5.3e-23 112.1 179 38.0
BcaNung06434 Brassica carinata HOM05D003540 ORTHO05D004012 6.9e-23 111.7 179 37.4
THA.LOC104812634 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 6.9e-23 111.7 179 35.8
BcaNung06754 Brassica carinata HOM05D003540 ORTHO05D004012 9.0e-23 111.3 179 37.4
Lj1g0025059 Lotus japonicus HOM05D003540 ORTHO05D004012 9.0e-23 111.3 179 39.7
AL1G42780 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 1.2e-22 110.9 179 38.5
AT1G29060 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 1.5e-22 110.5 179 38.5
BraA08t34486Z Brassica rapa HOM05D003540 ORTHO05D004012 1.5e-22 110.5 179 37.4
Medtr5g065550 Medicago truncatula HOM05D003540 ORTHO05D004012 1.5e-22 110.5 179 40.8
Ah.05g170560 Amaranthus hybridus HOM05D003540 ORTHO05D004012 2.0e-22 110.2 179 36.3
Psat2g066800 Pisum sativum HOM05D003540 ORTHO05D004012 2.0e-22 110.2 179 39.1
Solyc02g063075.1 Solanum lycopersicum HOM05D003540 ORTHO05D004012 2.0e-22 110.2 179 37.4
Sopen02g014150 Solanum pennellii HOM05D003540 ORTHO05D004012 2.0e-22 110.2 179 37.4
PGSC0003DMG400024178 Solanum tuberosum HOM05D003540 ORTHO05D004012 2.0e-22 110.2 179 37.4
TPR.G6376 Trifolium pratense HOM05D003540 ORTHO05D004012 2.0e-22 110.2 180 40.6
QL09p016915 Quercus lobata HOM05D003540 ORTHO05D004012 2.6e-22 109.8 178 37.6
Lalb_Chr10g0102641 Lupinus albus HOM05D003540 ORTHO05D004012 3.4e-22 109.4 176 40.9
Phvul.008G178700 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 3.4e-22 109.4 179 39.7
Lsat_1_v5_gn_1_2480 Lactuca sativa HOM05D003540 ORTHO05D004012 5.8e-22 108.6 168 40.5
MSTRG.11484 Avicennia marina HOM05D003540 ORTHO05D004012 7.6e-22 108.2 183 37.7
Duzib041G0585 Durio zibethinus HOM05D003540 ORTHO05D004012 7.6e-22 108.2 177 37.9
PGR031G1594 Punica granatum HOM05D003540 ORTHO05D004012 7.6e-22 108.2 179 38.5
Glyma.02G211500 Glycine max HOM05D003540 ORTHO05D004012 1.0e-21 107.8 179 38.5
Sc01g0000960 Simmondsia chinensis HOM05D003540 ORTHO05D004012 1.0e-21 107.8 172 40.1
Nitab4.5_0001984g0080 Nicotiana tabacum HOM05D003540 ORTHO05D004012 1.3e-21 107.5 171 38.0
Aa31LG5G21170 Aethionema arabicum HOM05D003540 ORTHO05D004012 1.7e-21 107.1 179 36.9
CSS0021893 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 1.7e-21 107.1 185 34.6
Glyma.14G179100 Glycine max HOM05D003540 ORTHO05D004012 1.7e-21 107.1 179 38.5
TWI12G0801 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 2.2e-21 106.7 179 38.0
ClCG11G014400 Citrullus lanatus HOM05D003540 ORTHO05D004012 2.9e-21 106.3 168 40.5
BcaC05g26921 Brassica carinata HOM05D003540 ORTHO05D004012 3.8e-21 105.9 179 35.8
C05p27740 Brassica napus HOM05D003540 ORTHO05D004012 3.8e-21 105.9 179 35.8
VMungo0647G0300 Vigna mungo HOM05D003540 ORTHO05D004012 8.4e-21 104.8 179 38.5
TAR381G0359 Trochodendron aralioides HOM05D003540 ORTHO05D004012 1.1e-20 104.4 158 41.1
Manes.02G147700 Manihot esculenta HOM05D003540 ORTHO05D004012 2.5e-20 103.2 176 36.4
SGA_v2.0_scaffold37G14731 Striga asiatica HOM05D003540 ORTHO05D004012 2.5e-20 103.2 178 37.6
SalBow7G2649 Salvia bowleyana HOM05D003540 ORTHO05D004012 5.5e-20 102.1 183 37.2
Lsat_1_v5_gn_6_105381 Lactuca sativa HOM05D003540 ORTHO05D004012 7.1e-20 101.7 178 36.5
SalBow6G0357 Salvia bowleyana HOM05D003540 ORTHO05D004012 1.6e-19 100.5 183 36.6
Psat5g050000 Pisum sativum HOM05D003540 ORTHO05D004012 2.7e-19 99.8 180 37.2
Haze_22354 Corylus avellana HOM05D003540 ORTHO05D004012 4.6e-19 99.0 179 36.3
Cfa013710 Carpinus fangiana HOM05D003540 ORTHO05D004012 6.0e-19 98.6 179 35.8
Actinidia29606 Actinidia chinensis HOM05D003540 ORTHO05D004012 1.0e-18 97.8 155 40.6
Glyma.06G098800 Glycine max HOM05D003540 ORTHO05D004012 1.0e-18 97.8 179 36.9
SMO141G0171 Selaginella moellendorffii HOM05D003540 ORTHO05D004012 1.3e-18 97.4 159 35.8
Lalb_Chr23g0270301 Lupinus albus HOM05D003540 ORTHO05D004012 1.8e-18 97.1 181 35.4
DCAR_001735 Daucus carota HOM05D003540 ORTHO05D004012 8.7e-18 94.7 177 35.0
Os03g0187700 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 8.7e-18 94.7 178 36.5
vmacro21941 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 8.7e-18 94.7 157 35.7
RcHm_v2.0_Chr7g0237701 Rosa chinensis HOM05D003540 ORTHO05D004012 1.9e-17 93.6 162 35.2
Phvul.009G034800 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 4.3e-17 92.4 176 37.5
MSTRG.9688 Avicennia marina HOM05D003540 ORTHO05D004012 5.7e-17 92.0 162 36.4
PSO675G6040 Papaver somniferum HOM05D003540 ORTHO05D004012 1.3e-16 90.9 169 36.7
AagrBONN_evm.TU.Sc2ySwM_228.2385 Anthoceros agrestis HOM05D003540 ORTHO05D004012 1.6e-16 90.5 173 32.4
MD08G1191600 Malus domestica HOM05D003540 ORTHO05D004012 6.2e-16 88.6 175 33.7
Medtr3g099773 Medicago truncatula HOM05D003540 ORTHO05D004012 6.2e-16 88.6 73 56.2
QL06p047634 Quercus lobata HOM05D003540 ORTHO05D004012 1.8e-15 87.0 126 46.0
arahy.Tifrunner.gnm1.ann1.QI1MS0 Arachis hypogaea HOM05D003540 ORTHO05D004012 1.2e-14 84.3 165 35.2
Mapoly0006s0109 Marchantia polymorpha HOM05D003540 ORTHO05D004012 1.2e-14 84.3 169 31.4
Migut.O00140 Erythranthe guttata HOM05D003540 ORTHO05D004012 1.5e-14 84.0 74 54.1
SGA_v2.0_scaffold5G02749 Striga asiatica HOM05D003540 ORTHO05D004012 2.0e-14 83.6 69 55.1
arahy.Tifrunner.gnm1.ann1.41SNZJ Arachis hypogaea HOM05D003540 ORTHO05D004012 2.6e-14 83.2 167 34.1
arahy.Tifrunner.gnm1.ann1.NU78SD Arachis hypogaea HOM05D003540 ORTHO05D004012 2.6e-14 83.2 167 34.1
arahy.Tifrunner.gnm1.ann1.Q67T8J Arachis hypogaea HOM05D003540 ORTHO05D004012 2.6e-14 83.2 165 34.5
Lalb_Chr23g0270201 Lupinus albus HOM05D003540 ORTHO05D004012 3.4e-14 82.8 73 54.8
AUR62002400 Chenopodium quinoa HOM05D003540 ORTHO05D004012 7.6e-14 81.6 155 34.8
SEGI_39968 Sequoiadendron giganteum HOM05D003540 ORTHO05D004012 7.6e-14 81.6 154 33.8
CDE05G3211 Ceratophyllum demersum HOM05D000364 ORTHO05D004012 1.3e-13 80.9 154 35.7
SalBow6G2258 Salvia bowleyana HOM05D003540 ORTHO05D004012 2.2e-13 80.1 159 34.6
SalBow6G4055 Salvia bowleyana HOM05D003540 ORTHO05D004012 2.2e-13 80.1 159 34.6
FAN13G2229 Fragaria x ananassa HOM05D003540 ORTHO05D004012 2.9e-13 79.7 158 33.5
FvH4_5g35960 Fragaria vesca HOM05D003540 ORTHO05D004012 8.4e-13 78.2 159 33.3
FAN18G2789 Fragaria x ananassa HOM05D003540 ORTHO05D004012 8.4e-13 78.2 159 33.3
FAN08G1899 Fragaria x ananassa HOM05D003540 ORTHO05D004012 2.5e-12 76.6 158 32.9
TWI56G0839 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 9.3e-12 74.7 73 49.3
Dinv42647 Davidia involucrata HOM05D003540 ORTHO05D004012 6.7e-10 68.6 42 76.2
BolC7t42159H Brassica oleracea HOM05D003540 ORTHO05D004012 1.9e-09 67.0 42 71.4
Cc04_g11820 Coffea canephora HOM05D003540 ORTHO05D004012 5.7e-09 65.5 177 28.2
Nn1g08254 Nelumbo nucifera HOM05D003540 ORTHO05D004012 5.7e-09 65.5 40 75.0
Pp3c7_10130 Physcomitrium patens HOM05D003540 ORTHO05D004012 5.7e-09 65.5 73 46.6
Aa31LG6G11550 Aethionema arabicum HOM05D003540 ORTHO05D004012 9.7e-09 64.7 42 69.0
AUR62019000 Chenopodium quinoa HOM05D003540 ORTHO05D004012 9.7e-09 64.7 42 73.8
AUR62027843 Chenopodium quinoa HOM05D003540 ORTHO05D004012 9.7e-09 64.7 42 73.8
Gohir.A05G356050 Gossypium hirsutum HOM05D003540 ORTHO05D004012 2.8e-08 63.2 53 50.9
A08p25340 Brassica napus HOM05D003540 ORTHO05D004012 3.7e-08 62.8 42 66.7
CDE04G1284 Ceratophyllum demersum HOM05D003540 ORTHO05D004012 3.7e-08 62.8 67 47.8
BolC5t31494H Brassica oleracea HOM05D003540 ORTHO05D004012 6.3e-08 62.0 42 66.7
Nitab4.5_0013778g0010 Nicotiana tabacum HOM05D003540 ORTHO05D004012 6.3e-08 62.0 81 43.2
CsaV3_3G047800 Cucumis sativus L. HOM05D003540 ORTHO05D004012 1.8e-07 60.5 39 71.8
Nitab4.5_0000008g0680 Nicotiana tabacum HOM05D003540 ORTHO05D004012 1.8e-07 60.5 42 66.7
Oeu023447.1 Olea europaea HOM05D003540 ORTHO05D004012 2.4e-07 60.1 46 65.2
Atru.chr13.1061 Acer truncatum HOM05D003540 ORTHO05D004012 1.2e-06 57.8 41 65.9
Atru.chr3.3368 Acer truncatum HOM05D003185 ORTHO05D007711 1.2e-06 57.8 41 65.9
Nitab4.5_0007681g0020 Nicotiana tabacum HOM05D003540 ORTHO05D004012 1.2e-06 57.8 42 64.3
AagrBONN_evm.TU.Sc2ySwM_228.2961 Anthoceros agrestis HOM05D003540 ORTHO05D004012 2.6e-06 56.6 139 30.9
Ca_05384_v3 Cicer arietinum L. HOM05D003540 ORTHO05D004012 4.5e-06 55.8 42 64.3
Actinidia33112 Actinidia chinensis HOM05D003540 ORTHO05D004012 1.0e-05 54.7 43 60.5


User provided reference genes

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