Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 0.0e+00 1121.3 590 100.0
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 0.0e+00 1107.4 584 99.5
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 1.9e-304 1048.5 585 92.8
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 4.3e-304 1047.3 585 92.3
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 6.0e-298 1026.9 586 91.6
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.8e-294 1015.4 586 87.7
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 3.5e-290 1001.1 585 87.0
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 7.8e-290 1000.0 590 88.8
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 7.8e-290 1000.0 585 87.2
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 1.3e-289 999.2 588 89.1
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 3.9e-289 997.7 586 89.1
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 1.1e-288 996.1 590 89.7
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 7.3e-288 993.4 588 88.6
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 2.8e-287 991.5 586 87.0
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 3.6e-287 991.1 586 87.9
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 3.6e-287 991.1 589 88.1
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 4.4e-285 984.2 586 87.7
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 7.6e-285 983.4 586 86.9
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 1.2e-282 976.1 595 86.6
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 3.5e-282 974.5 589 86.8
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 6.6e-281 970.3 585 86.5
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 8.7e-281 969.9 589 86.1
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 7.3e-280 966.8 585 88.2
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 6.2e-279 963.8 586 85.8
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 1.8e-278 962.2 590 84.4
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 2.0e-277 958.7 589 84.7
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 2.6e-277 958.4 584 83.7
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 8.4e-276 953.4 588 84.5
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 7.1e-275 950.3 585 82.6
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 2.7e-274 948.3 587 85.0
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 2.7e-274 948.3 587 85.0
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 1.3e-273 946.0 592 82.9
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.3e-273 945.3 592 82.9
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.0e-273 944.9 592 82.8
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 6.6e-273 943.7 587 82.3
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 2.5e-272 941.8 600 81.3
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.5e-272 941.8 590 82.4
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 1.3e-271 939.5 592 83.3
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 3.6e-271 937.9 603 81.1
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 2.4e-270 935.3 590 82.9
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 4.0e-270 934.5 590 81.7
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 9.0e-270 933.3 592 81.1
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.2e-269 932.9 592 81.1
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 5.8e-269 930.6 592 81.1
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.8e-268 927.9 597 77.9
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.1e-267 926.4 597 77.7
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.2e-267 924.9 594 80.1
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.1e-266 922.2 588 82.0
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 3.5e-266 921.4 599 82.0
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 3.5e-266 921.4 592 80.4
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.8e-265 919.1 588 81.8
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 1.1e-264 916.4 591 80.4
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 2.5e-264 915.2 587 81.3
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 3.3e-264 914.8 598 81.1
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 1.3e-263 912.9 586 81.2
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.6e-263 912.5 587 80.6
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 2.8e-263 911.8 587 80.7
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 3.7e-263 911.4 587 80.4
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 1.1e-262 909.8 586 79.9
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 2.4e-262 908.7 587 80.4
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 5.3e-262 907.5 590 79.3
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 5.3e-262 907.5 587 80.6
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 3.4e-261 904.8 593 79.9
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 2.2e-260 902.1 593 78.4
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 1.9e-259 899.0 589 79.3
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 1.9e-259 899.0 589 80.1
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 3.2e-259 898.3 586 78.2
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 3.2e-259 898.3 586 78.2
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 5.5e-259 897.5 589 80.0
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 1.6e-258 896.0 592 78.9
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 3.5e-258 894.8 586 79.4
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 1.3e-257 892.9 589 78.8
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 1.8e-257 892.5 590 79.5
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 3.0e-257 891.7 587 78.9
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 3.9e-257 891.3 593 79.4
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 7.4e-256 887.1 588 78.9
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 7.4e-256 887.1 588 78.9
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 7.4e-256 887.1 588 78.9
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.6e-255 885.9 599 77.5
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 3.7e-255 884.8 588 79.3
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 1.1e-254 883.2 589 78.3
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 1.4e-254 882.9 587 80.2
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 2.4e-254 882.1 592 78.7
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 3.1e-254 881.7 597 76.4
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 6.9e-254 880.6 583 77.7
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 1.5e-253 879.4 586 76.5
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 1.5e-253 879.4 607 76.8
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 1.5e-253 879.4 592 79.2
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 2.0e-253 879.0 586 76.1
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 2.6e-253 878.6 601 77.0
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 7.6e-253 877.1 587 77.9
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 1.0e-252 876.7 595 77.0
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 3.8e-252 874.8 585 76.4
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 3.2e-251 871.7 583 77.5
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 3.2e-251 871.7 584 76.7
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 5.5e-251 870.9 586 79.0
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 1.4e-246 856.3 583 77.2
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 1.8e-246 855.9 596 75.8
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 1.8e-246 855.9 590 74.9
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 2.4e-246 855.5 593 76.6
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 6.9e-246 854.0 590 75.6
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 3.2e-243 845.1 590 77.8
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 2.8e-239 832.0 544 78.7
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 3.1e-238 828.6 546 75.6
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 4.1e-238 828.2 584 73.5
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 4.1e-238 828.2 594 74.6
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 5.3e-238 827.8 636 71.4
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 8.5e-236 820.5 597 73.7
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 5.7e-232 807.7 587 74.1
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.4e-230 803.1 591 72.8
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.0e-228 797.0 604 71.2
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.3e-228 796.6 593 72.2
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 8.5e-228 793.9 604 71.0
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 1.5e-227 793.1 862 54.2
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 3.0e-225 785.4 587 72.9
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 6.3e-223 777.7 609 69.0
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 9.4e-219 763.8 584 70.4
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 8.8e-217 757.3 588 67.9
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 9.5e-211 737.3 566 69.4
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.2e-201 704.9 468 80.1
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 9.8e-184 647.5 441 78.2
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.5e-181 639.0 589 61.3
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.8e-175 619.0 519 68.0
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 5.3e-161 572.0 586 52.9
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 5.8e-160 568.5 595 51.6
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 4.6e-157 558.9 590 55.1
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 1.8e-145 520.4 594 54.0
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 7.6e-136 488.4 606 45.4
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 1.1e-131 474.6 583 47.2
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 1.2e-93 348.2 209 80.9
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.8e-90 337.0 239 70.3
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 3.3e-86 323.6 322 55.6
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 8.6e-79 298.9 625 36.0
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 5.8e-75 286.2 232 70.3
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 6.8e-68 262.7 268 57.1
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 1.5e-59 235.0 581 28.9
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 4.3e-54 216.9 148 75.0
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.9e-50 204.1 151 70.9
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 4.5e-35 153.7 201 46.3
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 9.3e-33 146.0 98 72.4
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 1.5e-30 138.7 620 26.3
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 2.3e-23 114.8 71 73.2
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 1.9e-22 111.7 71 71.8
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 1.9e-22 111.7 208 48.6
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 4.3e-22 110.5 68 72.1
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 3.8e-18 97.4 114 43.9
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.1e-14 85.9 59 74.6
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 2.4e-12 78.2 90 46.7
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 7.7e-11 73.2 93 44.1


User provided reference genes

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