Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 2.9e-137 491.9 244 100.0
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 2.2e-121 439.1 260 86.9
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 3.9e-86 322.0 262 65.3
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 2.5e-85 319.3 253 64.4
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 2.2e-84 316.2 273 64.1
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 1.4e-83 313.5 240 65.8
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 3.1e-83 312.4 235 65.5
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 3.1e-83 312.4 256 60.2
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 6.9e-83 311.2 258 64.0
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 1.5e-82 310.1 268 59.7
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 1.5e-82 310.1 251 63.7
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 7.6e-82 307.8 242 64.5
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 1.3e-81 307.0 253 62.5
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 2.2e-81 306.2 249 60.6
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 5.0e-81 305.1 227 64.8
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 5.0e-81 305.1 206 71.8
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 6.5e-81 304.7 266 61.7
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 6.5e-81 304.7 256 59.0
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 6.5e-81 304.7 217 68.7
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 8.5e-81 304.3 275 57.1
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 2.5e-80 302.8 254 62.6
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 3.2e-80 302.4 225 67.1
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 3.2e-80 302.4 259 61.8
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.2e-80 302.0 235 66.0
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 7.2e-80 301.2 261 62.1
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 7.2e-80 301.2 260 59.6
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 7.2e-80 301.2 260 61.9
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 9.4e-80 300.8 257 60.7
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.2e-79 300.4 258 59.7
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 1.6e-79 300.1 240 64.6
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 2.1e-79 299.7 229 66.4
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 2.1e-79 299.7 269 59.5
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 4.6e-79 298.5 238 61.8
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 6.1e-79 298.1 260 61.2
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 7.9e-79 297.7 230 66.5
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 1.8e-78 296.6 261 59.8
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 1.8e-78 296.6 246 62.2
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 1.8e-78 296.6 262 58.8
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 5.1e-78 295.0 262 59.5
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 8.8e-78 294.3 231 64.1
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 1.1e-77 293.9 220 66.4
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 4.3e-77 292.0 240 62.1
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 4.3e-77 292.0 247 58.7
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 4.3e-77 292.0 267 58.4
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.7e-77 291.6 255 61.2
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 5.7e-77 291.6 247 58.3
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 7.4e-77 291.2 231 63.2
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 7.4e-77 291.2 256 57.0
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 9.7e-77 290.8 247 58.3
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 1.3e-76 290.4 234 61.5
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 1.7e-76 290.0 211 65.9
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.7e-76 290.0 214 65.9
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 1.7e-76 290.0 241 61.0
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 2.2e-76 289.7 205 67.3
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 2.8e-76 289.3 231 63.2
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 3.7e-76 288.9 264 57.2
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 3.7e-76 288.9 257 61.1
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 8.2e-76 287.7 256 59.4
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 1.1e-75 287.3 254 59.8
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.1e-75 287.3 254 59.8
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.4e-75 287.0 244 59.0
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 1.8e-75 286.6 220 65.9
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 2.4e-75 286.2 249 58.6
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 4.1e-75 285.4 257 56.8
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 4.1e-75 285.4 264 56.8
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 1.2e-74 283.9 188 73.4
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 2.0e-74 283.1 247 58.7
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 2.0e-74 283.1 258 58.1
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 3.4e-74 282.3 260 55.8
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.9e-74 281.6 252 59.5
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 3.8e-73 278.9 198 67.7
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 3.8e-73 278.9 267 57.3
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 1.9e-72 276.6 260 56.2
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 5.5e-72 275.0 253 56.1
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 5.5e-72 275.0 247 59.1
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 9.4e-72 274.2 264 55.7
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 1.2e-71 273.9 206 64.1
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 2.1e-71 273.1 245 57.1
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 7.9e-71 271.2 190 67.9
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 3.0e-70 269.2 226 61.1
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 8.8e-70 267.7 190 66.8
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 1.5e-69 266.9 196 63.8
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.7e-69 265.0 197 66.5
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 2.2e-68 263.1 205 61.5
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 2.2e-68 263.1 199 62.3
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 2.8e-68 262.7 207 61.4
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 2.8e-68 262.7 254 53.9
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 3.7e-68 262.3 268 52.6
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 3.7e-68 262.3 195 63.6
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 4.8e-68 261.9 205 62.0
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 6.3e-68 261.5 249 55.4
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 8.2e-68 261.2 208 60.1
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 7.0e-67 258.1 263 51.0
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 7.0e-67 258.1 206 59.7
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 1.2e-66 257.3 226 57.1
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 1.2e-66 257.3 226 57.1
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 1.2e-66 257.3 257 54.1
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 1.5e-66 256.9 192 62.5
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 2.0e-66 256.5 259 51.4
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 2.0e-66 256.5 243 53.9
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 2.0e-66 256.5 195 61.0
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 3.4e-66 255.8 208 58.7
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 3.4e-66 255.8 263 50.2
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 5.9e-66 255.0 208 58.7
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 1.7e-65 253.4 198 63.6
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.2e-65 253.1 160 74.4
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 2.5e-64 249.6 172 70.9
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 4.2e-64 248.8 186 63.4
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 5.5e-64 248.4 156 74.4
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 1.4e-62 243.8 246 54.9
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 3.0e-62 242.7 196 60.7
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 8.8e-62 241.1 161 69.6
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 8.8e-62 241.1 221 58.8
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 5.7e-61 238.4 167 65.9
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 7.7e-58 228.0 243 48.6
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 5.0e-57 225.3 163 66.9
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 5.0e-57 225.3 203 58.1
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 6.5e-57 224.9 246 49.2
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 1.8e-51 206.8 253 45.1
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.1e-51 205.7 136 75.0
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 3.8e-49 199.1 238 42.4
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 8.3e-44 181.4 141 63.1
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 2.4e-43 179.9 273 38.8
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 5.2e-38 162.2 130 56.9
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 3.7e-36 156.0 199 45.7
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 8.3e-36 154.8 91 79.1
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 3.1e-35 152.9 94 76.6
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 3.1e-35 152.9 160 55.0
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.0e-35 151.8 80 86.2
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.6e-34 150.6 103 70.9
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 7.3e-32 141.7 102 67.6
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 1.1e-27 127.9 108 57.4
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 8.3e-20 101.7 174 37.4
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 2.1e-18 97.1 159 34.6
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 5.6e-16 89.0 49 79.6
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 5.6e-16 89.0 270 29.3
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 5.6e-16 89.0 199 29.6
HanXRQChr05g0129231 Helianthus annuus HOM05D007024 ORTHO05D008865 1.2e-15 87.8 201 29.4
unitig_746.g26783 Utricularia gibba HOM05D007024 ORTHO05D008865 1.2e-15 87.8 191 31.4
Nitab4.5_0010883g0010 Nicotiana tabacum HOM05D007024 ORTHO05D008865 1.6e-15 87.4 185 31.4
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 1.6e-15 87.4 186 32.3
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 2.1e-15 87.0 182 31.3
Oeu029107.1 Olea europaea HOM05D007024 ORTHO05D008865 4.7e-15 85.9 202 31.7
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 4.7e-15 85.9 177 32.8
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 8.1e-15 85.1 194 30.4
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 8.1e-15 85.1 192 30.7
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 8.1e-15 85.1 53 75.5
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 1.4e-14 84.3 185 31.9
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 1.8e-14 84.0 210 31.0
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 3.1e-14 83.2 215 28.8
Migut.L01652 Erythranthe guttata HOM05D007024 ORTHO05D008865 4.0e-14 82.8 193 30.1
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 4.0e-14 82.8 228 29.4
PSO782G5617 Papaver somniferum HOM05D007024 ORTHO05D008865 5.2e-14 82.4 211 27.5
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 5.2e-14 82.4 182 31.3
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 5.2e-14 82.4 182 31.3
PGR004G2860 Punica granatum HOM05D007024 ORTHO05D008865 6.8e-14 82.0 230 27.8
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 1.5e-13 80.9 201 30.3
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 2.6e-13 80.1 133 38.3
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 4.4e-13 79.3 266 30.5
Nn2g10613 Nelumbo nucifera HOM05D007024 ORTHO05D008865 5.8e-13 79.0 181 29.3
Zm00001eb013030 Zea mays HOM05D007024 ORTHO05D008865 1.3e-12 77.8 194 29.4
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 1.7e-12 77.4 259 27.0
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.1e-11 74.7 55 67.3
GSVIVG01025554001 Vitis vinifera HOM05D007024 ORTHO05D008865 2.4e-11 73.6 269 28.6
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 3.2e-11 73.2 37 94.6
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 1.6e-10 70.9 155 32.9
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 2.1e-10 70.5 114 34.2
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 4.6e-10 69.3 126 35.7
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 6.0e-10 68.9 181 30.9
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 7.8e-10 68.6 132 33.3
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 1.0e-09 68.2 208 28.4
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 1.3e-09 67.8 67 55.2
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 2.3e-09 67.0 158 34.2
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 3.0e-09 66.6 52 57.7
CBR_g9017 Chara braunii HOM05D001161 ORTHO05D000497 8.6e-09 65.1 139 30.9
CANSAT80G1842 Cannabis sativa HOM05D007024 ORTHO05D008865 1.1e-08 64.7 200 30.5
Hund12062 Selenicereus undatus HOM05D007024 ORTHO05D008865 1.9e-08 63.9 174 31.0
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 7.3e-08 62.0 90 38.9
SGA_v2.0_scaffold94G28656 Striga asiatica HOM05D007024 ORTHO05D008865 1.6e-07 60.8 106 33.0


User provided reference genes

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