Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14998 Corylus avellana HOM05D003313 ORTHO05D004217 0.0e+00 1262.3 703 100.0
Cfa004406 Carpinus fangiana HOM05D003313 ORTHO05D004217 0.0e+00 1104.4 734 87.3
QL11p018449 Quercus lobata HOM05D003313 ORTHO05D004217 2.5e-290 1001.9 744 78.0
CiPaw.01G000400 Carya illinoinensis HOM05D003313 ORTHO05D004217 1.3e-278 963.0 736 74.7
GSVIVG01029823001 Vitis vinifera HOM05D003313 ORTHO05D004217 2.2e-275 952.2 642 79.0
Dinv30970 Davidia involucrata HOM05D003313 ORTHO05D004217 1.8e-272 942.6 642 77.7
Atru.chr3.2031 Acer truncatum HOM05D003313 ORTHO05D004217 8.2e-270 933.7 644 77.8
Thecc.09G202800 Theobroma cacao HOM05D003313 ORTHO05D004217 2.1e-265 919.1 768 70.2
Sabra06G0061800 Salix brachista HOM05D003313 ORTHO05D004217 6.7e-264 914.1 745 71.8
Gohir.D08G091400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 9.7e-263 910.2 734 71.8
CANSAT01G1610 Cannabis sativa HOM05D003313 ORTHO05D004217 1.7e-262 909.4 642 75.7
TAR624G0023 Trochodendron aralioides HOM05D003313 ORTHO05D004217 1.7e-262 909.4 640 76.4
TAR624G1107 Trochodendron aralioides HOM05D003313 ORTHO05D004217 1.7e-262 909.4 640 76.4
Duzib150G0949 Durio zibethinus HOM05D003313 ORTHO05D004217 2.2e-262 909.1 761 70.6
Gorai.004G096900 Gossypium raimondii HOM05D003313 ORTHO05D004217 3.7e-262 908.3 744 72.2
Lj1g0026129 Lotus japonicus HOM05D003313 ORTHO05D004217 6.3e-262 907.5 643 75.6
Manes.11G105500 Manihot esculenta HOM05D003313 ORTHO05D004217 6.3e-262 907.5 635 76.1
Gohir.A08G082000 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.4e-261 906.4 744 72.2
Ciclev10018511m.g Citrus clementina HOM05D003313 ORTHO05D004217 3.1e-261 905.2 625 76.6
Prupe.8G187800 Prunus persica HOM05D003313 ORTHO05D004217 7.0e-261 904.0 644 75.0
Potri.006G081800 Populus trichocarpa HOM05D003313 ORTHO05D004217 1.3e-259 899.8 745 71.3
FAN27G0740 Fragaria x ananassa HOM05D003313 ORTHO05D004217 1.7e-259 899.4 643 75.0
FAN27G0645 Fragaria x ananassa HOM05D003313 ORTHO05D004217 6.5e-259 897.5 643 74.8
FvH4_2g17560 Fragaria vesca HOM05D003313 ORTHO05D004217 1.1e-258 896.7 643 74.7
RcHm_v2.0_Chr6g0282501 Rosa chinensis HOM05D003313 ORTHO05D004217 1.9e-258 896.0 716 69.0
FAN15G1274 Fragaria x ananassa HOM05D003313 ORTHO05D004217 4.2e-258 894.8 643 74.5
FAN24G1237 Fragaria x ananassa HOM05D003313 ORTHO05D004217 7.2e-258 894.0 643 74.3
MD05G1154700 Malus domestica HOM05D003313 ORTHO05D004217 3.6e-257 891.7 645 74.1
TPR.G8371 Trifolium pratense HOM05D003313 ORTHO05D004217 3.6e-257 891.7 644 74.7
MELO3C021123.2 Cucumis melo HOM05D003313 ORTHO05D004217 6.1e-257 891.0 643 74.0
Sed0021054 Sechium edule HOM05D003313 ORTHO05D004217 6.1e-257 891.0 636 74.4
Nn3g20244 Nelumbo nucifera HOM05D003313 ORTHO05D004217 8.0e-257 890.6 638 75.1
Psat3g015640 Pisum sativum HOM05D003313 ORTHO05D004217 3.9e-256 888.3 631 75.1
Rhsim11G0111700 Rhododendron simsii HOM05D003313 ORTHO05D004217 1.7e-254 882.9 642 73.7
CsaV3_7G026710 Cucumis sativus L. HOM05D003313 ORTHO05D004217 4.8e-254 881.3 643 73.4
vmacro01644 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 6.3e-254 880.9 635 74.2
arahy.Tifrunner.gnm1.ann1.9JB77L Arachis hypogaea HOM05D003313 ORTHO05D004217 2.4e-253 879.0 632 74.5
arahy.Tifrunner.gnm1.ann1.XWZQ7T Arachis hypogaea HOM05D003313 ORTHO05D004217 2.4e-253 879.0 632 74.5
THA.LOC104814960 Tarenaya hassleriana HOM05D003313 ORTHO05D004217 3.1e-253 878.6 629 74.4
Medtr7g111080 Medicago truncatula HOM05D003313 ORTHO05D004217 4.1e-253 878.2 650 73.8
CSS0016348 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.6e-252 876.3 635 74.2
VMungo1383G1216 Vigna mungo HOM05D003313 ORTHO05D004217 2.6e-252 875.5 653 73.4
CSS0044155 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 4.5e-252 874.8 629 74.7
Eucgr.B01361 Eucalyptus grandis HOM05D003313 ORTHO05D004217 1.0e-251 873.6 746 64.9
Aqoxy1G01346 Aquilegia oxysepala HOM05D003313 ORTHO05D004217 3.8e-251 871.7 644 73.3
Actinidia17722 Actinidia chinensis HOM05D003313 ORTHO05D004217 5.0e-251 871.3 644 73.1
Oeu016865.1 Olea europaea HOM05D003313 ORTHO05D004217 5.0e-251 871.3 643 72.2
Phvul.001G220300 Phaseolus vulgaris HOM05D003313 ORTHO05D004217 8.5e-251 870.5 653 73.0
CSS0008361 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.1e-250 870.2 637 73.6
CSS0011425 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.1e-250 870.2 637 73.6
Lj5C312G5 Lonicera japonica HOM05D003313 ORTHO05D004217 2.5e-250 869.0 614 75.1
COL.COLO4_07112 Corchorus olitorius HOM05D003313 ORTHO05D004217 3.6e-249 865.1 785 65.6
Glyma.19G223400 Glycine max HOM05D003313 ORTHO05D004217 3.6e-249 865.1 763 66.7
ClCG09G008380 Citrullus lanatus HOM05D003313 ORTHO05D004217 1.8e-248 862.8 707 67.6
PSO675G1011 Papaver somniferum HOM05D003313 ORTHO05D004217 3.4e-247 858.6 646 72.3
SalBow4G0229 Salvia bowleyana HOM05D003313 ORTHO05D004217 4.4e-247 858.2 642 71.7
SalBow4G1329 Salvia bowleyana HOM05D003313 ORTHO05D004217 9.8e-247 857.1 633 72.4
PSO541G4460 Papaver somniferum HOM05D003313 ORTHO05D004217 1.3e-246 856.7 646 72.3
Glyma.03G226400 Glycine max HOM05D003313 ORTHO05D004217 3.7e-246 855.1 636 73.3
Aa31LG11G3950 Aethionema arabicum HOM05D003313 ORTHO05D004217 4.8e-246 854.7 643 71.9
DCAR_029787 Daucus carota HOM05D003313 ORTHO05D004217 8.3e-246 854.0 637 72.7
Ah.13g077320 Amaranthus hybridus HOM05D003313 ORTHO05D004217 1.4e-245 853.2 633 71.7
Sc10g0006280 Simmondsia chinensis HOM05D003313 ORTHO05D004217 2.4e-245 852.4 635 72.0
Hund24556 Selenicereus undatus HOM05D003313 ORTHO05D004217 5.4e-245 851.3 641 71.5
EL10Ac3g07331 Beta vulgaris HOM05D003313 ORTHO05D004217 4.5e-244 848.2 634 71.6
CARHR188770 Cardamine hirsuta HOM05D003313 ORTHO05D004217 7.7e-244 847.4 646 70.9
AT5G24710 Arabidopsis thaliana HOM05D003313 ORTHO05D004217 1.7e-243 846.3 641 71.1
Sp2g22700 Schrenkiella parvula HOM05D003313 ORTHO05D004217 8.5e-243 844.0 646 71.2
AL6G36310 Arabidopsis lyrata HOM05D003313 ORTHO05D004217 4.2e-242 841.6 624 72.4
Cc02_g36830 Coffea canephora HOM05D003313 ORTHO05D004217 4.2e-242 841.6 641 71.1
Thhalv10003520m.g Eutrema salsugineum HOM05D003313 ORTHO05D004217 4.2e-242 841.6 646 70.9
MBI07_g10943_MAGBIO Magnolia biondii HOM05D003313 ORTHO05D004217 4.2e-242 841.6 653 71.2
Carub.0006s2256 Capsella rubella HOM05D003313 ORTHO05D004217 5.5e-242 841.3 646 70.6
TWI38G1822 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 2.7e-241 839.0 602 74.1
Nitab4.5_0000399g0070 Nicotiana tabacum HOM05D003313 ORTHO05D004217 4.7e-241 838.2 643 70.5
Migut.B00692 Erythranthe guttata HOM05D003313 ORTHO05D004217 1.0e-240 837.0 644 69.4
TWI39G0913 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 4.0e-240 835.1 615 72.8
Nitab4.5_0004090g0090 Nicotiana tabacum HOM05D003313 ORTHO05D004217 8.8e-240 833.9 643 70.1
SGA_v2.0_scaffold311G48230 Striga asiatica HOM05D003313 ORTHO05D004217 1.5e-239 833.2 646 68.6
MSTRG.27897 Avicennia marina HOM05D003313 ORTHO05D004217 2.0e-239 832.8 735 62.7
Ca_09260_v3 Cicer arietinum L. HOM05D003313 ORTHO05D004217 2.6e-239 832.4 623 72.4
Lsat_1_v5_gn_7_68120 Lactuca sativa HOM05D003313 ORTHO05D004217 2.6e-239 832.4 614 71.8
HanXRQChr15g0468281 Helianthus annuus HOM05D003313 ORTHO05D004217 1.3e-238 830.1 643 69.4
C07p43000 Brassica napus HOM05D003313 ORTHO05D004217 2.2e-238 829.3 610 73.1
BolC7t44829H Brassica oleracea HOM05D003313 ORTHO05D004217 2.2e-238 829.3 610 73.1
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 8.3e-238 827.4 625 71.5
Peaxi162Scf00194g00629 Petunia axillaris HOM05D003313 ORTHO05D004217 3.1e-237 825.5 642 69.6
A06p35540 Brassica napus HOM05D003313 ORTHO05D004217 5.4e-237 824.7 609 72.6
BraA06t26479Z Brassica rapa HOM05D003313 ORTHO05D004217 5.4e-237 824.7 609 72.6
Peaxi162Scf00071g00133 Petunia axillaris HOM05D003313 ORTHO05D004217 5.4e-237 824.7 638 69.7
PGSC0003DMG400018227 Solanum tuberosum HOM05D003313 ORTHO05D004217 7.0e-237 824.3 635 69.6
Lalb_Chr18g0046271 Lupinus albus HOM05D003313 ORTHO05D004217 1.2e-236 823.5 633 70.3
Sopen01g044950 Solanum pennellii HOM05D003313 ORTHO05D004217 2.7e-236 822.4 643 69.1
ECA240G0535 Erigeron canadensis HOM05D003313 ORTHO05D004217 3.5e-236 822.0 630 69.5
Solyc01g102510.4 Solanum lycopersicum HOM05D003313 ORTHO05D004217 3.5e-236 822.0 635 69.4
A09p06410 Brassica napus HOM05D003313 ORTHO05D004217 7.7e-236 820.8 615 71.9
C09p07140 Brassica napus HOM05D003313 ORTHO05D004217 7.7e-236 820.8 617 71.8
BraA09t36285Z Brassica rapa HOM05D003313 ORTHO05D004217 7.7e-236 820.8 615 71.9
CAN.G1379.33 Capsicum annuum HOM05D003313 ORTHO05D004217 1.7e-235 819.7 635 69.1
BcaNung01252 Brassica carinata HOM05D003313 ORTHO05D004217 8.6e-235 817.4 597 73.2
Lj9C240T5 Lonicera japonica HOM05D003313 ORTHO05D004217 1.6e-233 813.1 651 69.0
Lalb_Chr15g0077831 Lupinus albus HOM05D003313 ORTHO05D004217 1.8e-229 799.7 640 69.4
Hund19080 Selenicereus undatus HOM05D003313 ORTHO05D004217 1.2e-228 797.0 634 68.9
HPP92_021469 Vanilla planifolia HOM05D003313 ORTHO05D004217 7.8e-228 794.3 647 66.9
Gohir.D08G026400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 3.6e-225 785.4 601 70.5
Gorai.004G022900 Gossypium raimondii HOM05D003313 ORTHO05D004217 3.6e-225 785.4 601 70.5
MD10G1148800 Malus domestica HOM05D003313 ORTHO05D004217 3.6e-225 785.4 632 69.1
Os01g0653800 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 1.4e-221 773.5 609 68.5
ATR0620G123 Amborella trichopoda HOM05D003313 ORTHO05D004217 7.0e-221 771.2 646 66.3
Zm00001eb359400 Zea mays HOM05D003313 ORTHO05D004217 1.6e-220 770.0 612 67.8
Zm00001eb158110 Zea mays HOM05D003313 ORTHO05D004217 1.5e-218 763.5 612 67.8
SEGI_06427 Sequoiadendron giganteum HOM05D003313 ORTHO05D004217 1.1e-216 757.3 640 66.1
AUR62018429 Chenopodium quinoa HOM05D003313 ORTHO05D004217 3.2e-213 745.7 602 67.4
unitig_699.g19829 Utricularia gibba HOM05D003313 ORTHO05D004217 3.2e-213 745.7 557 68.9
Sc10g0005440 Simmondsia chinensis HOM05D003313 ORTHO05D004217 1.5e-202 710.3 529 71.6
AUR62021005 Chenopodium quinoa HOM05D003313 ORTHO05D004217 1.9e-202 709.9 603 64.8
Actinidia11708 Actinidia chinensis HOM05D003313 ORTHO05D004217 3.3e-202 709.1 568 67.8
Gohir.A08G016300 Gossypium hirsutum HOM05D003313 ORTHO05D004217 2.7e-188 662.9 603 62.5
BcaC04g23548 Brassica carinata HOM05D003313 ORTHO05D004217 1.2e-180 637.5 442 76.0
SMO116G0300 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 1.0e-166 591.3 627 52.6
DCAR_029313 Daucus carota HOM05D003313 ORTHO05D004217 1.3e-163 580.9 470 68.1
AagrBONN_evm.TU.Sc2ySwM_228.3123 Anthoceros agrestis HOM05D003313 ORTHO05D004217 6.5e-158 562.0 655 51.1
Mapoly0031s0124 Marchantia polymorpha HOM05D003313 ORTHO05D004217 2.7e-156 556.6 652 49.8
Pp3c1_36370 Physcomitrium patens HOM05D003313 ORTHO05D004217 7.9e-156 555.1 627 52.0
DCAR_029312 Daucus carota HOM05D003313 ORTHO05D004217 9.7e-154 548.1 449 67.5
DCAR_032260 Daucus carota HOM05D003313 ORTHO05D004217 9.7e-154 548.1 449 67.5
BcaNung07352 Brassica carinata HOM05D003313 ORTHO05D004217 2.0e-151 540.4 380 74.7
CDE09G0721 Ceratophyllum demersum HOM05D003313 ORTHO05D004217 2.1e-140 503.8 445 62.7
CBR_g3034 Chara braunii HOM05D003313 ORTHO05D004217 2.5e-117 427.2 582 43.5
Cpa.g.sc17.15 Carica papaya HOM05D003313 ORTHO05D004217 4.1e-112 409.8 419 65.2
SHI06529 Sapria himalayana HOM05D003313 ORTHO05D004217 1.2e-92 345.1 394 49.0
DCAR_032163 Daucus carota HOM05D003313 ORTHO05D004217 9.6e-69 265.8 243 61.3
Hund25753 Selenicereus undatus HOM05D003313 ORTHO05D004217 9.6e-69 265.8 256 59.8
ATR0620G069 Amborella trichopoda HOM05D003313 ORTHO05D004217 5.8e-66 256.5 249 60.6
Cpa.g.sc17.16 Carica papaya HOM05D003313 ORTHO05D004217 4.3e-53 213.8 125 84.8
Hma1.2p1_0052F.1_g030180 Hydrangea macrophylla HOM05D003313 ORTHO05D004217 2.4e-51 208.0 112 92.0
Nitab4.5_0011890g0010 Nicotiana tabacum HOM05D003313 ORTHO05D004217 3.2e-48 197.6 158 68.4
CBR_g53818 Chara braunii HOM05D003313 ORTHO05D004217 7.9e-39 166.4 155 54.8
ATR0620G130 Amborella trichopoda HOM05D003313 ORTHO05D004217 3.0e-38 164.5 172 54.7
Cpa.g.sc17.17 Carica papaya HOM05D003313 ORTHO05D004217 1.1e-35 156.0 74 95.9
CBR_g53812 Chara braunii HOM05D003313 ORTHO05D004217 4.5e-34 150.6 123 56.1
Nitab4.5_0005421g0020 Nicotiana tabacum HOM05D003313 ORTHO05D004217 5.0e-33 147.1 158 57.0
EL10Ac6g13974 Beta vulgaris HOM05D000877 ORTHO05D012137 5.3e-27 127.1 84 75.0
PRCOL_00001888 Prasinoderma coloniale HOM05D003313 ORTHO05D004217 9.7e-21 106.3 543 25.0
Sed0004563 Sechium edule HOM05D003313 ORTHO05D004217 1.5e-16 92.4 84 58.3
FvH4_1g29860 Fragaria vesca HOM05D003313 ORTHO05D015668 5.2e-14 84.0 54 72.2
FAN15G1318 Fragaria x ananassa HOM05D003313 ORTHO05D015668 2.6e-13 81.6 58 67.2
ATR0620G024 Amborella trichopoda HOM05D003313 ORTHO05D004217 4.4e-13 80.9 100 54.0
DCAR_032162 Daucus carota HOM05D003313 ORTHO05D004217 7.5e-13 80.1 90 56.7
FAN07G0876 Fragaria x ananassa HOM05D003313 ORTHO05D015668 7.5e-13 80.1 58 67.2
FAN21G1344 Fragaria x ananassa HOM05D003313 ORTHO05D015668 9.8e-13 79.7 54 68.5
FAN19G3111 Fragaria x ananassa HOM05D003313 ORTHO05D015668 1.7e-12 79.0 58 65.5
FAN02G4136 Fragaria x ananassa HOM05D003313 ORTHO05D015668 2.8e-12 78.2 58 63.8
GSVIVG01038281001 Vitis vinifera HOM05D003313 ORTHO05D004217 1.8e-11 75.5 114 44.7
FAN15G2142 Fragaria x ananassa HOM05D003313 ORTHO05D015668 5.4e-11 73.9 58 62.1
FAN05G0528 Fragaria x ananassa HOM05D003313 ORTHO05D015668 9.1e-11 73.2 54 66.7
FAN10G1842 Fragaria x ananassa HOM05D003313 ORTHO05D015668 1.2e-10 72.8 54 63.0
Os01g0653350 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 1.6e-10 72.4 52 67.3
vmacro04716 Vaccinium macrocarpon HOM05D001931 ORTHO05D001891 4.5e-10 70.9 41 80.5
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 7.7e-10 70.1 37 83.8


User provided reference genes

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