Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14997 Corylus avellana HOM05D003313 ORTHO05D004217 0.0e+00 1621.7 826 100.0
Cfa004406 Carpinus fangiana HOM05D003313 ORTHO05D004217 1.6e-309 1065.8 819 73.0
QL11p018449 Quercus lobata HOM05D003313 ORTHO05D004217 1.4e-297 1026.2 819 69.4
GSVIVG01029823001 Vitis vinifera HOM05D003313 ORTHO05D004217 3.9e-295 1018.1 819 68.9
Dinv30970 Davidia involucrata HOM05D003313 ORTHO05D004217 9.0e-292 1006.9 819 68.0
Ciclev10018511m.g Citrus clementina HOM05D003313 ORTHO05D004217 1.7e-290 1002.7 819 68.4
Hma1.2p1_0052F.1_g030180 Hydrangea macrophylla HOM05D003313 ORTHO05D004217 9.3e-289 996.9 819 67.2
Potri.006G081800 Populus trichocarpa HOM05D003313 ORTHO05D004217 1.0e-287 993.4 820 67.3
ClCG09G008380 Citrullus lanatus HOM05D003313 ORTHO05D004217 1.3e-287 993.0 819 67.2
CSS0008361 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 2.3e-287 992.3 819 66.7
CSS0011425 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 2.3e-287 992.3 819 66.7
MELO3C021123.2 Cucumis melo HOM05D003313 ORTHO05D004217 1.5e-286 989.6 819 67.0
CsaV3_7G026710 Cucumis sativus L. HOM05D003313 ORTHO05D004217 1.5e-286 989.6 819 67.0
Sed0021054 Sechium edule HOM05D003313 ORTHO05D004217 9.6e-286 986.9 819 66.8
Nn3g20244 Nelumbo nucifera HOM05D003313 ORTHO05D004217 6.2e-285 984.2 819 66.8
Gohir.D08G091400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.8e-284 982.6 819 65.9
Gorai.004G096900 Gossypium raimondii HOM05D003313 ORTHO05D004217 1.8e-284 982.6 819 65.9
Lj9C240T5 Lonicera japonica HOM05D003313 ORTHO05D004217 3.1e-284 981.9 819 66.3
Gohir.A08G082000 Gossypium hirsutum HOM05D003313 ORTHO05D004217 9.0e-284 980.3 819 65.8
Manes.11G105500 Manihot esculenta HOM05D003313 ORTHO05D004217 1.5e-283 979.5 819 66.4
TAR624G0023 Trochodendron aralioides HOM05D003313 ORTHO05D004217 3.4e-283 978.4 819 66.1
TAR624G1107 Trochodendron aralioides HOM05D003313 ORTHO05D004217 3.4e-283 978.4 819 66.1
Thecc.09G202800 Theobroma cacao HOM05D003313 ORTHO05D004217 4.5e-283 978.0 819 66.7
MBI07_g10943_MAGBIO Magnolia biondii HOM05D003313 ORTHO05D004217 7.6e-283 977.2 819 65.8
Atru.chr3.2031 Acer truncatum HOM05D003313 ORTHO05D004217 8.4e-282 973.8 825 64.2
CANSAT01G1610 Cannabis sativa HOM05D003313 ORTHO05D004217 1.1e-281 973.4 819 66.1
CSS0016348 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.4e-281 973.0 820 65.9
CSS0044155 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.9e-281 972.6 820 65.9
MD05G1154700 Malus domestica HOM05D003313 ORTHO05D004217 1.6e-280 969.5 819 65.3
TWI38G1822 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 1.0e-279 966.8 820 67.0
Prupe.8G187800 Prunus persica HOM05D003313 ORTHO05D004217 1.8e-279 966.1 819 65.7
Aqoxy1G01346 Aquilegia oxysepala HOM05D003313 ORTHO05D004217 3.9e-279 964.9 819 65.3
Glyma.03G226400 Glycine max HOM05D003313 ORTHO05D004217 1.9e-278 962.6 819 65.4
Sc10g0005440 Simmondsia chinensis HOM05D003313 ORTHO05D004217 3.3e-278 961.8 820 65.5
Phvul.001G220300 Phaseolus vulgaris HOM05D003313 ORTHO05D004217 3.7e-277 958.4 819 65.0
PSO541G4460 Papaver somniferum HOM05D003313 ORTHO05D004217 4.8e-277 958.0 819 65.4
THA.LOC104814960 Tarenaya hassleriana HOM05D003313 ORTHO05D004217 4.8e-277 958.0 819 65.0
Glyma.19G223400 Glycine max HOM05D003313 ORTHO05D004217 6.2e-277 957.6 819 65.2
RcHm_v2.0_Chr6g0282501 Rosa chinensis HOM05D003313 ORTHO05D004217 6.2e-277 957.6 856 63.1
Sabra06G0061800 Salix brachista HOM05D003313 ORTHO05D004217 6.2e-277 957.6 887 61.8
Oeu016865.1 Olea europaea HOM05D003313 ORTHO05D004217 8.1e-277 957.2 819 64.8
SalBow4G0229 Salvia bowleyana HOM05D003313 ORTHO05D004217 8.1e-277 957.2 819 64.6
SalBow4G1329 Salvia bowleyana HOM05D003313 ORTHO05D004217 8.1e-277 957.2 819 64.6
PSO675G1011 Papaver somniferum HOM05D003313 ORTHO05D004217 1.8e-276 956.1 820 65.5
Cc02_g36830 Coffea canephora HOM05D003313 ORTHO05D004217 4.0e-276 954.9 819 64.8
FAN24G1237 Fragaria x ananassa HOM05D003313 ORTHO05D004217 2.0e-275 952.6 819 64.5
VMungo1383G1216 Vigna mungo HOM05D003313 ORTHO05D004217 2.0e-275 952.6 819 64.5
FvH4_2g17560 Fragaria vesca HOM05D003313 ORTHO05D004217 5.8e-275 951.0 819 64.3
FAN15G1274 Fragaria x ananassa HOM05D003313 ORTHO05D004217 1.7e-274 949.5 819 64.2
FAN27G0740 Fragaria x ananassa HOM05D003313 ORTHO05D004217 3.8e-274 948.3 819 64.3
Lsat_1_v5_gn_7_68120 Lactuca sativa HOM05D003313 ORTHO05D004217 4.9e-274 948.0 821 64.2
HanXRQChr15g0468281 Helianthus annuus HOM05D003313 ORTHO05D004217 6.4e-274 947.6 819 65.4
Lalb_Chr15g0077831 Lupinus albus HOM05D003313 ORTHO05D004217 4.2e-273 944.9 819 64.2
Lj1g0026129 Lotus japonicus HOM05D003313 ORTHO05D004217 5.5e-273 944.5 819 63.5
Medtr7g111080 Medicago truncatula HOM05D003313 ORTHO05D004217 3.5e-272 941.8 819 63.9
Ca_09260_v3 Cicer arietinum L. HOM05D003313 ORTHO05D004217 6.0e-272 941.0 819 63.7
Psat3g015640 Pisum sativum HOM05D003313 ORTHO05D004217 1.0e-271 940.3 819 63.7
ECA240G0535 Erigeron canadensis HOM05D003313 ORTHO05D004217 2.3e-271 939.1 820 64.0
PGSC0003DMG400018227 Solanum tuberosum HOM05D003313 ORTHO05D004217 3.0e-271 938.7 819 63.2
Solyc01g102510.4 Solanum lycopersicum HOM05D003313 ORTHO05D004217 2.5e-270 935.6 819 63.5
Sopen01g044950 Solanum pennellii HOM05D003313 ORTHO05D004217 2.5e-270 935.6 819 63.2
AT5G24710 Arabidopsis thaliana HOM05D003313 ORTHO05D004217 1.3e-269 933.3 819 63.7
A06p35540 Brassica napus HOM05D003313 ORTHO05D004217 8.2e-269 930.6 819 63.1
BraA06t26479Z Brassica rapa HOM05D003313 ORTHO05D004217 8.2e-269 930.6 819 63.1
Thhalv10003520m.g Eutrema salsugineum HOM05D003313 ORTHO05D004217 1.1e-268 930.2 819 63.4
AL6G36310 Arabidopsis lyrata HOM05D003313 ORTHO05D004217 1.4e-268 929.9 819 63.4
C07p43000 Brassica napus HOM05D003313 ORTHO05D004217 1.4e-268 929.9 819 63.0
BolC7t44829H Brassica oleracea HOM05D003313 ORTHO05D004217 1.4e-268 929.9 819 63.0
CAN.G1379.33 Capsicum annuum HOM05D003313 ORTHO05D004217 2.6e-267 925.6 819 60.1
Aa31LG11G3950 Aethionema arabicum HOM05D003313 ORTHO05D004217 3.4e-267 925.2 819 63.2
MSTRG.27897 Avicennia marina HOM05D003313 ORTHO05D004217 5.8e-267 924.5 820 62.8
Migut.B00692 Erythranthe guttata HOM05D003313 ORTHO05D004217 1.3e-266 923.3 820 62.9
AUR62018429 Chenopodium quinoa HOM05D003313 ORTHO05D004217 1.7e-266 922.9 819 60.9
AUR62021005 Chenopodium quinoa HOM05D003313 ORTHO05D004217 4.9e-266 921.4 819 61.1
Sp2g22700 Schrenkiella parvula HOM05D003313 ORTHO05D004217 8.4e-266 920.6 819 63.0
CARHR188770 Cardamine hirsuta HOM05D003313 ORTHO05D004217 1.9e-265 919.5 819 62.8
Nitab4.5_0004090g0090 Nicotiana tabacum HOM05D003313 ORTHO05D004217 7.1e-265 917.5 832 61.8
Hund24556 Selenicereus undatus HOM05D003313 ORTHO05D004217 9.3e-265 917.1 842 62.1
Lalb_Chr18g0046271 Lupinus albus HOM05D003313 ORTHO05D004217 1.6e-264 916.4 819 62.9
ATR0620G123 Amborella trichopoda HOM05D003313 ORTHO05D004217 6.0e-264 914.4 819 61.3
Carub.0006s2256 Capsella rubella HOM05D003313 ORTHO05D004217 1.0e-263 913.7 819 62.8
A09p06410 Brassica napus HOM05D003313 ORTHO05D004217 1.1e-262 910.2 819 62.3
C09p07140 Brassica napus HOM05D003313 ORTHO05D004217 1.1e-262 910.2 819 62.6
BraA09t36285Z Brassica rapa HOM05D003313 ORTHO05D004217 1.1e-262 910.2 819 62.3
BcaC04g23548 Brassica carinata HOM05D003313 ORTHO05D004217 5.7e-262 907.9 819 62.5
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 7.4e-262 907.5 819 62.4
Os01g0653800 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 9.7e-262 907.1 819 60.8
Duzib150G0949 Durio zibethinus HOM05D003313 ORTHO05D004217 2.0e-259 899.4 819 62.1
Zm00001eb359400 Zea mays HOM05D003313 ORTHO05D004217 8.5e-258 894.0 819 60.4
Zm00001eb158110 Zea mays HOM05D003313 ORTHO05D004217 1.2e-256 890.2 819 60.0
Ah.13g077320 Amaranthus hybridus HOM05D003313 ORTHO05D004217 2.0e-251 872.8 755 62.3
EL10Ac3g07331 Beta vulgaris HOM05D003313 ORTHO05D004217 6.5e-250 867.8 841 60.4
Hund19080 Selenicereus undatus HOM05D003313 ORTHO05D004217 9.7e-246 854.0 819 56.5
SGA_v2.0_scaffold311G48230 Striga asiatica HOM05D003313 ORTHO05D004217 8.8e-239 830.9 876 56.5
Eucgr.B01361 Eucalyptus grandis HOM05D003313 ORTHO05D004217 1.1e-238 830.5 763 62.4
Peaxi162Scf00071g00133 Petunia axillaris HOM05D003313 ORTHO05D004217 8.2e-237 824.3 764 59.2
Gohir.D08G026350 Gossypium hirsutum HOM05D003313 ORTHO05D004217 5.9e-235 818.1 826 57.0
Gorai.004G022800 Gossypium raimondii HOM05D003313 ORTHO05D004217 5.9e-235 818.1 826 57.0
Rhsim11G0111700 Rhododendron simsii HOM05D003313 ORTHO05D004217 4.0e-231 805.4 856 56.3
BcaNung01252 Brassica carinata HOM05D003313 ORTHO05D004217 2.6e-230 802.7 746 58.6
Lj5C312G5 Lonicera japonica HOM05D003313 ORTHO05D004217 9.7e-230 800.8 808 56.1
Nitab4.5_0005421g0020 Nicotiana tabacum HOM05D003313 ORTHO05D004217 2.4e-228 796.2 760 57.2
SEGI_06427 Sequoiadendron giganteum HOM05D003313 ORTHO05D004217 2.4e-228 796.2 820 54.0
Nitab4.5_0011890g0010 Nicotiana tabacum HOM05D003313 ORTHO05D004217 2.7e-224 782.7 760 56.2
TPR.G8375 Trifolium pratense HOM05D003313 ORTHO05D004217 9.8e-222 774.2 705 59.9
BcaNung07352 Brassica carinata HOM05D003313 ORTHO05D004217 1.1e-220 770.8 743 59.6
FAN27G0645 Fragaria x ananassa HOM05D003313 ORTHO05D004217 3.4e-214 749.2 819 54.6
HPP92_021469 Vanilla planifolia HOM05D003313 ORTHO05D004217 1.3e-213 747.3 819 54.6
Peaxi162Scf00194g00629 Petunia axillaris HOM05D003313 ORTHO05D004217 3.5e-211 739.2 761 54.4
Cpa.g.sc17.18 Carica papaya HOM05D003313 ORTHO05D004217 7.3e-209 731.5 482 81.7
Nitab4.5_0000399g0070 Nicotiana tabacum HOM05D003313 ORTHO05D004217 2.2e-205 719.9 766 52.9
arahy.Tifrunner.gnm1.ann1.9JB77L Arachis hypogaea HOM05D003313 ORTHO05D004217 2.9e-205 719.5 494 77.9
arahy.Tifrunner.gnm1.ann1.XWZQ7T Arachis hypogaea HOM05D003313 ORTHO05D004217 4.9e-205 718.8 494 77.9
SMO116G0300 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 2.9e-189 666.4 821 47.1
CiPaw.01G000400 Carya illinoinensis HOM05D003313 ORTHO05D004217 4.6e-187 659.1 424 84.9
unitig_699.g19829 Utricularia gibba HOM05D003313 ORTHO05D004217 7.1e-180 635.2 822 49.3
AagrBONN_evm.TU.Sc2ySwM_228.3123 Anthoceros agrestis HOM05D003313 ORTHO05D004217 5.6e-177 625.5 824 44.5
Pp3c1_36370 Physcomitrium patens HOM05D003313 ORTHO05D004217 9.6e-177 624.8 823 45.8
vmacro01644 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 1.1e-161 574.7 396 78.5
Mapoly0031s0124 Marchantia polymorpha HOM05D003313 ORTHO05D004217 1.5e-153 547.7 828 41.3
CDE09G1422 Ceratophyllum demersum HOM05D003313 ORTHO05D004217 4.5e-150 536.2 539 54.9
Glyma.20G050100 Glycine max HOM05D003313 ORTHO05D004217 9.0e-143 511.9 434 63.4
CBR_g3034 Chara braunii HOM05D003313 ORTHO05D004217 3.0e-138 496.9 833 36.6
DCAR_029787 Daucus carota HOM05D003313 ORTHO05D004217 8.5e-133 478.8 590 48.3
MD10G1148900 Malus domestica HOM05D003313 ORTHO05D004217 2.6e-121 440.7 295 75.6
Actinidia11708 Actinidia chinensis HOM05D003313 ORTHO05D004217 1.7e-117 427.9 323 69.7
DCAR_032259 Daucus carota HOM05D003313 ORTHO05D004217 1.3e-112 411.8 428 54.4
CiPaw.01G000300 Carya illinoinensis HOM05D003313 ORTHO05D004217 3.7e-104 383.6 398 55.5
Gohir.A08G023424 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.4e-103 381.7 490 51.2
DCAR_029311 Daucus carota HOM05D003313 ORTHO05D004217 4.1e-103 380.2 449 51.0
Actinidia17722 Actinidia chinensis HOM05D003313 ORTHO05D004217 2.0e-102 377.9 233 87.6
Cpa.g.sc17.19 Carica papaya HOM05D003313 ORTHO05D004217 4.6e-86 323.6 167 91.6
vmacro01642 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 1.1e-74 285.8 235 65.1
COL.COLO4_07112 Corchorus olitorius HOM05D003313 ORTHO05D004217 7.6e-73 279.6 314 53.5
arahy.Tifrunner.gnm1.ann1.W8I5D1 Arachis hypogaea HOM05D003313 ORTHO05D004217 4.9e-64 250.4 152 82.2
arahy.Tifrunner.gnm1.ann1.VIS9FS Arachis hypogaea HOM05D003313 ORTHO05D004217 3.8e-56 224.2 194 71.1
Psat5g204480 Pisum sativum HOM05D000518 ORTHO05D000737 1.9e-52 211.8 149 72.5
SHI06531 Sapria himalayana HOM05D003313 ORTHO05D004217 2.5e-52 211.5 123 80.5
Psat5g204560 Pisum sativum HOM05D000518 ORTHO05D000737 1.1e-50 206.1 149 70.5
Duzib248G1591 Durio zibethinus HOM05D003313 ORTHO05D004217 1.2e-49 202.6 109 88.1
Hma1.2p1_0105F.1_g050850 Hydrangea macrophylla HOM05D003313 ORTHO05D004217 8.7e-45 186.4 122 76.2
MD10G1148800 Malus domestica HOM05D003313 ORTHO05D004217 1.9e-39 168.7 112 87.5
arahy.Tifrunner.gnm1.ann1.UGM12E Arachis hypogaea HOM05D003313 ORTHO05D004217 4.2e-39 167.5 128 78.1
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 4.2e-39 167.5 95 84.2
Psat5g202120 Pisum sativum HOM05D001594 ORTHO05D002862 7.1e-39 166.8 97 83.5
Psat5g202200 Pisum sativum HOM05D001594 ORTHO05D002862 7.1e-39 166.8 95 84.2
TPR.G8371 Trifolium pratense HOM05D003313 ORTHO05D004217 7.1e-39 166.8 112 86.6
SHI06530 Sapria himalayana HOM05D003313 ORTHO05D004217 1.2e-38 166.0 125 68.0
Duzib128G1568 Durio zibethinus HOM05D003313 ORTHO05D004217 7.4e-36 156.8 89 80.9
PRCOL_00001888 Prasinoderma coloniale HOM05D003313 ORTHO05D004217 2.8e-35 154.8 770 20.8
vmacro01643 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 2.8e-35 154.8 101 75.2
Psat5g199800 Pisum sativum HOM05D003313 ORTHO05D004031 3.7e-35 154.5 114 68.4
Nitab4.5_0004668g0010 Nicotiana tabacum HOM05D003313 ORTHO05D004217 2.4e-34 151.8 116 64.7
SHI06534 Sapria himalayana HOM05D003313 ORTHO05D004217 3.1e-34 151.4 96 75.0
MD10G1149000 Malus domestica HOM05D003313 ORTHO05D004217 6.5e-32 143.7 72 93.1
SHI06529 Sapria himalayana HOM05D003313 ORTHO05D004217 2.5e-31 141.7 111 70.3
HanXRQChr14g0448821 Helianthus annuus HOM05D003313 ORTHO05D004217 9.3e-31 139.8 75 88.0
SHI06540 Sapria himalayana HOM05D003313 ORTHO05D004217 3.9e-29 134.4 72 84.7
Glyma.18G148901 Glycine max HOM05D003313 ORTHO05D004217 6.7e-29 133.7 76 85.5
Psat5g199760 Pisum sativum HOM05D000518 ORTHO05D000737 2.0e-25 122.1 149 49.0
arahy.Tifrunner.gnm1.ann1.ZR84UM Arachis hypogaea HOM05D003313 ORTHO05D012270 1.2e-22 112.8 70 81.4
SHI06533 Sapria himalayana HOM05D003313 ORTHO05D004217 4.1e-18 97.8 58 79.3
Cre12.g535350 Chlamydomonas reinhardtii HOM05D003313 ORTHO05D004217 5.3e-18 97.4 169 34.9
QL09p014688 Quercus lobata HOM05D000257 ORTHO05D009129 1.2e-17 96.3 85 60.0
Os05g0297001 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 2.3e-13 82.0 57 54.4
SMO353G0154 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 3.0e-13 81.6 68 52.9
arahy.Tifrunner.gnm1.ann1.HX4K8L Arachis hypogaea HOM05D003313 ORTHO05D004217 9.7e-12 76.6 42 81.0
VMungo0720G1425 Vigna mungo HOM05D003313 ORTHO05D004217 1.2e-06 59.7 37 75.7
Sed0007544 Sechium edule HOM05D003313 ORTHO05D004217 6.1e-06 57.4 43 72.1
SMO334G0084 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 6.1e-06 57.4 76 42.1


User provided reference genes

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