Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 1.7e-160 569.3 290 100.0
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 6.8e-154 547.4 290 96.2
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 4.8e-131 471.5 309 78.3
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 1.0e-125 453.8 289 82.0
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 1.0e-112 410.6 287 74.2
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 1.3e-112 410.2 287 73.9
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 2.2e-112 409.5 290 74.5
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 3.2e-111 405.6 284 74.6
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 7.1e-111 404.4 284 75.7
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 4.6e-110 401.7 293 72.0
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 2.3e-109 399.4 290 73.8
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 1.5e-108 396.7 292 72.9
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 2.5e-108 396.0 289 71.3
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 2.1e-107 392.9 289 73.0
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 3.7e-107 392.1 280 72.9
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 3.7e-107 392.1 320 68.1
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 1.4e-106 390.2 274 74.5
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 5.3e-106 388.3 274 74.1
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 9.0e-106 387.5 286 71.0
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 9.0e-106 387.5 238 82.8
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 9.0e-106 387.5 277 72.6
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.5e-105 386.7 290 71.0
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 2.0e-105 386.3 284 70.4
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 3.4e-105 385.6 290 71.0
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.5e-105 385.2 297 70.4
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 5.9e-105 384.8 290 73.4
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.0e-104 384.0 290 71.4
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 1.3e-104 383.6 280 71.8
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 2.9e-104 382.5 281 71.5
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.8e-104 382.1 295 70.2
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 5.0e-104 381.7 286 70.3
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 6.5e-104 381.3 286 70.6
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 8.5e-104 380.9 311 65.6
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 1.4e-103 380.2 284 70.8
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 4.2e-103 378.6 284 70.1
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 4.2e-103 378.6 260 76.5
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 7.2e-103 377.9 253 75.9
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 1.6e-102 376.7 261 75.5
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 4.6e-102 375.2 286 70.6
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 7.9e-102 374.4 254 76.8
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 1.3e-101 373.6 286 69.9
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 1.8e-101 373.2 288 68.8
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.8e-101 373.2 261 74.7
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 3.9e-101 372.1 286 68.9
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 3.9e-101 372.1 286 69.2
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 3.9e-101 372.1 287 71.1
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 5.1e-101 371.7 271 70.8
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 5.1e-101 371.7 267 71.5
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 6.7e-101 371.3 286 69.6
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 6.7e-101 371.3 284 70.4
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 8.7e-101 370.9 286 69.9
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.5e-100 370.2 286 69.6
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.9e-100 369.8 286 69.2
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 1.9e-100 369.8 286 69.2
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.5e-100 369.4 286 69.2
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 2.5e-100 369.4 285 70.2
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 5.7e-100 368.2 285 70.5
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 9.7e-100 367.5 267 70.4
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 9.7e-100 367.5 237 78.9
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 1.4e-98 363.6 229 80.8
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 2.4e-98 362.8 279 67.0
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 4.1e-98 362.1 284 66.9
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 5.3e-98 361.7 256 72.3
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.2e-97 360.5 268 70.9
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 1.5e-97 360.1 254 73.6
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.5e-97 360.1 284 66.9
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 2.6e-97 359.4 232 78.0
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 3.4e-97 359.0 284 67.6
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 1.0e-96 357.5 288 64.9
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 1.0e-96 357.5 288 64.9
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 2.2e-96 356.3 288 65.3
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 2.9e-96 355.9 247 72.5
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 2.9e-96 355.9 262 68.7
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 3.8e-96 355.5 287 65.5
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 3.8e-96 355.5 234 76.5
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 6.5e-96 354.8 247 73.7
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 1.1e-95 354.0 232 81.9
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 4.2e-95 352.1 284 65.5
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 4.2e-95 352.1 288 64.2
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 9.4e-95 350.9 289 63.3
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 1.6e-94 350.1 288 63.5
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 1.6e-94 350.1 288 63.9
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 1.6e-94 350.1 288 63.5
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.6e-94 350.1 285 66.3
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 2.1e-94 349.7 229 77.3
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 7.9e-94 347.8 249 70.7
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 2.3e-93 346.3 289 63.7
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 2.3e-93 346.3 289 63.7
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 2.3e-93 346.3 289 63.7
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 2.3e-93 346.3 223 77.1
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 2.6e-92 342.8 224 78.6
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 3.3e-92 342.4 245 71.4
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 3.3e-92 342.4 248 71.4
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 5.7e-92 341.7 285 66.3
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 7.4e-92 341.3 285 63.5
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 7.4e-92 341.3 246 70.3
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 1.3e-91 340.5 289 63.3
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 1.4e-90 337.0 245 70.6
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 1.4e-90 337.0 235 71.5
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 1.8e-90 336.7 293 61.8
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 1.8e-90 336.7 293 61.8
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.8e-90 336.7 286 65.7
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 3.4e-89 332.4 301 61.1
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 5.9e-89 331.6 262 66.0
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 1.3e-88 330.5 287 61.7
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.3e-88 330.5 291 62.2
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 8.5e-88 327.8 244 68.9
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 7.2e-87 324.7 236 69.1
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 1.6e-86 323.6 264 64.8
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 7.9e-86 321.2 202 82.2
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 9.7e-84 314.3 204 77.5
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 5.3e-82 308.5 229 67.2
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 1.2e-81 307.4 204 76.5
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 2.0e-81 306.6 230 67.0
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 2.0e-81 306.6 204 74.0
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.6e-81 306.2 191 81.7
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 5.9e-81 305.1 286 59.8
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 7.7e-81 304.7 244 63.9
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 5.0e-80 302.0 199 78.4
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 3.0e-77 292.7 199 73.4
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 1.5e-76 290.4 222 69.8
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.6e-76 289.7 235 67.7
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 9.7e-76 287.7 240 65.4
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 4.8e-75 285.4 229 63.8
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.4e-74 283.1 201 72.6
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 9.1e-74 281.2 244 61.1
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 7.2e-71 271.6 199 68.3
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 2.1e-70 270.0 236 60.6
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 1.8e-69 266.9 228 60.5
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.2e-68 264.2 167 79.0
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.2e-67 260.0 185 74.6
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 1.2e-65 254.2 289 49.8
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 4.5e-65 252.3 195 70.8
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 3.2e-63 246.1 149 85.2
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 3.4e-60 236.1 230 53.0
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 7.5e-60 235.0 240 52.5
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 9.8e-60 234.6 286 49.3
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 6.6e-56 221.9 133 78.2
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 2.6e-52 209.9 198 59.1
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 2.7e-49 199.9 146 71.2
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.5e-44 184.1 147 67.3
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.4e-44 183.0 147 67.3
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.9e-39 167.2 133 68.4
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.4e-37 161.0 138 63.0
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.4e-37 161.0 138 63.0
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.4e-37 161.0 158 60.1
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 5.8e-36 155.6 128 64.8
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.9e-31 140.6 117 66.7
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 8.4e-27 125.2 157 47.1
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 9.2e-26 121.7 74 79.7
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 3.5e-25 119.8 74 78.4
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 4.6e-25 119.4 74 78.4
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 6.0e-25 119.0 74 78.4
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.3e-24 117.1 74 75.7
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 6.6e-24 115.5 75 80.0
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 3.3e-23 113.2 67 88.1
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.4e-21 107.8 192 34.9
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 2.4e-21 107.1 90 61.1
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 2.6e-20 103.6 67 83.6
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 3.4e-20 103.2 69 81.2
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.6e-17 94.4 64 76.6
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 9.6e-15 85.1 65 69.2
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 5.3e-13 79.3 46 89.1
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 9.9e-12 75.1 82 54.9
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.3e-11 74.7 64 60.9
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 8.4e-11 72.0 44 77.3
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 4.2e-10 69.7 44 72.7
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 3.5e-09 66.6 67 52.2
QL02p069049 Quercus lobata HOM05D004185 ORTHO05D337452 1.5e-07 61.2 33 97.0
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 3.3e-07 60.1 207 26.1
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 2.8e-06 57.0 31 77.4
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 2.8e-06 57.0 31 77.4


User provided reference genes

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