Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 1.9e-232 808.9 445 100.0
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 9.3e-211 736.9 446 91.0
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.8e-137 493.4 441 63.9
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 4.4e-136 488.8 449 66.6
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 1.7e-111 407.1 458 53.7
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 3.8e-103 379.4 448 55.8
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 1.2e-101 374.4 455 53.0
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 1.3e-100 370.9 442 51.1
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 5.1e-100 369.0 453 51.0
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 1.9e-99 367.1 450 50.2
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 9.6e-99 364.8 453 49.0
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 2.1e-98 363.6 454 49.8
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 8.1e-98 361.7 456 50.7
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 2.4e-97 360.1 460 51.5
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 7.6e-96 355.1 442 49.3
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.7e-95 354.0 454 51.8
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 8.4e-95 351.7 447 49.4
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 3.2e-94 349.7 453 53.0
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 7.1e-94 348.6 457 52.3
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 1.2e-93 347.8 447 52.6
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 1.2e-93 347.8 464 52.4
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 6.0e-93 345.5 443 49.2
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 1.8e-92 344.0 455 48.1
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 5.1e-92 342.4 453 52.5
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 6.7e-92 342.0 452 52.2
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 6.7e-92 342.0 458 50.0
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 6.7e-92 342.0 459 50.5
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 6.7e-92 342.0 452 48.9
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 1.5e-91 340.9 448 48.0
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.5e-91 340.9 450 48.2
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 1.4e-89 334.3 463 47.5
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 2.6e-88 330.1 448 44.9
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 1.0e-87 328.2 451 49.9
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 6.7e-84 315.5 448 45.3
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 9.7e-83 311.6 451 46.1
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 2.4e-81 307.0 460 46.1
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 3.1e-81 306.6 450 46.4
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 2.6e-80 303.5 382 52.6
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 1.0e-79 301.6 465 46.9
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.7e-79 300.8 452 46.5
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 1.1e-78 298.1 444 45.5
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 9.4e-78 295.0 452 45.8
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.3e-76 290.4 447 45.2
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 5.1e-76 289.3 449 45.4
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 6.7e-76 288.9 448 45.8
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 1.1e-75 288.1 452 45.4
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.0e-75 287.3 448 45.1
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 4.3e-75 286.2 451 43.2
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 7.4e-75 285.4 491 41.1
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 8.2e-74 282.0 469 43.5
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 4.1e-73 279.6 456 42.8
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 2.2e-71 273.9 450 42.9
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 8.5e-71 271.9 453 43.3
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 1.2e-69 268.1 453 42.2
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 1.4e-68 264.6 451 44.1
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 1.8e-68 264.2 462 42.2
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.6e-67 260.4 492 39.8
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 4.4e-67 259.6 446 42.8
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 4.4e-67 259.6 463 43.0
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 1.3e-66 258.1 454 42.7
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 6.3e-66 255.8 451 41.7
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 1.2e-64 251.5 459 41.6
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 1.2e-64 251.5 449 40.3
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.7e-63 247.7 449 40.8
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 2.5e-62 243.8 492 38.4
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 7.2e-62 242.3 456 41.9
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 9.4e-62 241.9 447 41.4
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 2.7e-61 240.4 455 42.4
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 3.6e-61 240.0 457 38.7
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 8.0e-61 238.8 448 41.7
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 1.8e-60 237.7 442 41.2
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 1.8e-60 237.7 459 43.1
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 8.8e-60 235.3 451 39.9
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 1.5e-59 234.6 451 39.9
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.5e-59 234.6 414 39.9
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.0e-59 234.2 364 41.5
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 1.7e-58 231.1 447 38.3
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 3.7e-58 229.9 449 39.2
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 4.8e-58 229.6 457 39.8
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 4.8e-58 229.6 472 36.7
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 6.3e-58 229.2 466 41.0
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 1.4e-57 228.0 475 38.7
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 2.4e-57 227.3 454 39.2
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 4.1e-57 226.5 389 40.9
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 7.0e-57 225.7 512 39.3
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 2.0e-56 224.2 450 38.7
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 2.0e-56 224.2 456 34.2
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 2.6e-56 223.8 453 40.8
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 4.5e-56 223.0 454 40.1
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 3.8e-55 219.9 446 38.3
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 2.5e-54 217.2 451 36.8
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 3.2e-54 216.9 446 37.7
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 7.2e-54 215.7 448 39.7
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 1.2e-53 214.9 449 38.8
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 2.7e-53 213.8 448 36.2
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.4e-52 211.5 446 40.1
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.0e-51 207.6 453 37.3
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 2.6e-51 207.2 461 37.1
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 2.6e-51 207.2 449 39.0
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 1.3e-50 204.9 453 41.3
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 2.2e-50 204.1 566 32.9
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 2.2e-50 204.1 444 36.3
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 1.1e-49 201.8 465 36.8
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.8e-49 201.1 443 38.8
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 3.1e-49 200.3 447 34.0
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 1.2e-48 198.4 444 35.8
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 2.0e-48 197.6 440 35.7
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 2.7e-48 197.2 455 34.9
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 4.5e-48 196.4 439 36.7
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 7.7e-48 195.7 461 36.0
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.3e-47 194.9 452 35.2
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 6.5e-47 192.6 466 35.8
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 1.6e-45 188.0 447 35.1
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 2.7e-45 187.2 326 39.9
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 6.1e-45 186.0 417 37.2
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 1.4e-44 184.9 447 34.7
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.8e-44 184.5 442 36.4
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 2.3e-44 184.1 448 34.4
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 6.8e-44 182.6 414 38.6
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 6.8e-44 182.6 450 33.6
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 2.0e-43 181.0 452 34.1
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 3.4e-43 180.3 451 33.7
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 3.4e-43 180.3 468 36.3
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 5.7e-43 179.5 453 34.9
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 3.7e-42 176.8 448 35.7
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 8.3e-42 175.6 443 32.3
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 8.3e-42 175.6 449 34.7
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 1.8e-41 174.5 462 33.8
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 4.1e-41 173.3 447 33.3
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 5.4e-41 172.9 457 33.5
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 7.0e-41 172.6 425 34.6
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 1.2e-40 171.8 267 41.6
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 5.9e-40 169.5 449 34.5
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 1.3e-39 168.3 451 32.8
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 2.9e-39 167.2 282 41.5
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 8.6e-39 165.6 452 33.8
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 8.6e-39 165.6 440 33.9
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.5e-38 164.9 452 34.1
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 4.7e-37 159.8 458 31.4
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 1.8e-36 157.9 456 33.6
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.2e-35 155.2 449 32.7
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.5e-35 154.8 452 32.5
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 2.0e-35 154.5 450 31.6
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 4.4e-35 153.3 453 32.9
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 9.2e-33 145.6 437 30.9
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 2.7e-32 144.1 457 32.2
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 2.7e-32 144.1 463 32.4
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 1.0e-31 142.1 377 37.9
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 8.6e-31 139.0 461 30.8
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 1.5e-30 138.3 457 30.9
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 5.6e-30 136.3 455 30.5
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 7.3e-30 136.0 287 37.6
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 1.6e-29 134.8 394 31.2
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 2.1e-29 134.4 457 31.7
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.6e-29 133.7 308 34.7
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 6.2e-29 132.9 453 33.1
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 1.8e-28 131.3 451 32.8
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 3.1e-28 130.6 378 32.0
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 5.2e-28 129.8 452 30.1
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 1.2e-27 128.6 427 31.9
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 1.7e-26 124.8 441 30.8
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 8.3e-26 122.5 456 30.5
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 3.5e-24 117.1 343 32.4
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 1.7e-23 114.8 446 27.1
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.3e-23 114.4 380 30.5
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 6.6e-23 112.8 171 45.0
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 6.2e-21 106.3 436 31.4
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 2.3e-20 104.4 280 33.9
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 2.6e-19 100.9 409 28.1
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.7e-18 97.1 184 39.7
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 2.1e-16 91.3 441 28.3
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 9.5e-14 82.4 200 31.0
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 9.5e-14 82.4 369 27.9
RcHm_v2.0_Chr2g0176501 Rosa chinensis HOM05D003379 ORTHO05D003862 1.6e-13 81.6 147 51.0
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 6.2e-13 79.7 169 38.5
Hma1.2p1_0421F.1_g149960 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 2.6e-11 74.3 95 48.4
Ah.14g088790 Amaranthus hybridus HOM05D003379 ORTHO05D003862 5.8e-11 73.2 195 34.9
FAN14G0132 Fragaria x ananassa HOM05D003379 ORTHO05D003862 5.8e-11 73.2 449 24.1
SalBow6G4465 Salvia bowleyana HOM05D003379 ORTHO05D003862 3.2e-09 67.4 156 41.7
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 7.1e-09 66.2 198 28.3
CARHR199410 Cardamine hirsuta HOM05D003379 ORTHO05D003862 7.1e-09 66.2 138 36.2
C03p62180 Brassica napus HOM05D003379 ORTHO05D003862 6.0e-08 63.2 101 43.6
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 1.7e-07 61.6 101 41.6
A05p12750 Brassica napus HOM05D003379 ORTHO05D003862 1.7e-07 61.6 181 31.5
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 3.0e-07 60.8 101 41.6
BraA05t20213Z Brassica rapa HOM05D003379 ORTHO05D003862 4.3e-06 57.0 126 35.7


User provided reference genes

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