Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 0.0e+00 1590.9 808 100.0
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 1.1e-310 1069.7 808 71.4
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 1.8e-276 956.1 812 63.4
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 3.1e-265 918.7 640 74.2
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 2.7e-261 905.6 810 61.9
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 8.3e-258 894.0 818 60.8
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 9.1e-257 890.6 810 60.9
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 3.8e-255 885.2 810 60.7
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 8.6e-255 884.0 812 60.7
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.0e-252 877.1 814 59.8
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 1.4e-252 876.7 821 61.4
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 6.3e-250 867.8 810 59.1
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 2.7e-248 862.4 816 58.7
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 6.6e-247 857.8 760 61.6
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 5.6e-246 854.7 847 57.6
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 5.6e-246 854.7 815 58.9
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 2.1e-245 852.8 812 59.5
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 1.8e-244 849.7 810 59.0
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 2.3e-244 849.4 818 58.4
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 8.9e-244 847.4 814 60.1
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 5.4e-241 838.2 820 58.3
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 9.2e-241 837.4 814 57.0
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 1.0e-239 833.9 862 55.5
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 5.6e-238 828.2 770 61.4
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 2.1e-237 826.2 818 57.3
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 1.4e-236 823.5 818 57.1
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 1.4e-233 813.5 762 60.0
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 3.5e-232 808.9 810 56.3
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 7.8e-232 807.7 818 56.5
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 1.3e-231 807.0 742 59.7
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 6.6e-231 804.7 808 55.6
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 1.5e-230 803.5 812 55.7
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 1.5e-230 803.5 809 56.1
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 3.3e-230 802.4 676 61.8
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 7.3e-230 801.2 812 56.3
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 2.3e-228 796.2 748 59.8
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 3.2e-225 785.8 741 59.0
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 5.4e-225 785.0 718 60.9
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 1.5e-222 776.9 838 53.9
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 3.3e-222 775.8 766 57.2
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 6.2e-221 771.5 745 57.4
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 4.0e-220 768.8 660 62.4
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 5.2e-220 768.5 798 55.4
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 2.6e-219 766.1 765 55.6
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 3.4e-219 765.8 809 54.3
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.5e-214 750.4 619 63.3
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 9.3e-209 731.1 653 60.8
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 4.6e-208 728.8 763 54.4
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 2.3e-207 726.5 815 52.1
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 8.1e-205 718.0 857 51.2
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 6.9e-204 714.9 809 51.8
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 8.4e-202 708.0 817 50.3
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 1.1e-201 707.6 823 51.9
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 1.2e-200 704.1 745 54.5
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 3.5e-200 702.6 810 53.3
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 7.9e-200 701.4 814 51.5
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 7.4e-198 694.9 818 51.5
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 4.9e-194 682.2 601 60.4
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 3.2e-193 679.5 810 50.7
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 3.0e-191 672.9 822 50.1
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 6.7e-191 671.8 815 49.7
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.5e-190 670.6 768 51.8
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 1.9e-190 670.2 811 51.0
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 9.6e-190 667.9 781 50.6
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 8.2e-189 664.8 818 50.1
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 1.4e-188 664.1 826 49.9
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 2.4e-188 663.3 742 52.3
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 1.2e-187 661.0 818 50.2
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 2.6e-187 659.8 826 49.8
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 1.1e-185 654.4 824 48.5
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 7.2e-185 651.7 819 48.5
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 2.1e-184 650.2 823 48.4
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 1.8e-183 647.1 820 48.4
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 2.3e-183 646.7 755 51.1
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 8.7e-183 644.8 831 48.9
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 1.1e-182 644.4 759 50.9
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 1.1e-180 637.9 795 47.7
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 2.6e-179 633.3 828 47.9
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 8.5e-178 628.2 829 47.2
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 1.1e-177 627.9 724 49.4
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 1.9e-177 627.1 826 47.1
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 2.5e-177 626.7 700 52.1
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 7.9e-176 621.7 829 45.8
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 2.2e-173 613.6 821 46.3
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 2.4e-172 610.1 817 46.1
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 3.1e-172 609.8 491 63.7
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 9.1e-172 608.2 820 46.2
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 7.9e-168 595.1 725 49.2
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 8.2e-165 585.1 506 60.7
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 3.5e-163 579.7 748 46.7
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 1.2e-160 571.2 808 45.8
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 2.6e-158 563.5 415 69.9
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 8.0e-152 542.0 540 57.4
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 2.2e-149 533.9 708 47.6
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 2.2e-149 533.9 772 43.3
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 2.9e-138 496.9 603 50.1
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 5.7e-134 482.6 766 41.0
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 1.3e-130 471.5 638 45.0
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.5e-129 468.0 556 49.8
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 1.4e-111 408.3 687 39.0
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 3.1e-111 407.1 780 36.5
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.0e-106 392.1 497 49.1
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 5.6e-105 386.3 511 47.0
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 4.4e-102 376.7 767 35.9
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 2.8e-80 304.3 816 30.6
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 9.0e-71 272.7 428 42.8
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 6.3e-64 250.0 723 29.6
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 8.2e-64 249.6 510 36.7
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 7.2e-60 236.5 362 44.5
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 8.5e-53 213.0 263 50.6
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 4.5e-46 190.7 213 54.0
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 1.5e-44 185.7 245 45.3
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 8.0e-43 179.9 208 51.9
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 4.4e-33 147.5 255 44.3
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 1.1e-31 142.9 629 24.5
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 7.0e-31 140.2 560 24.1
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 1.3e-29 136.0 318 36.5
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 1.6e-27 129.0 192 41.7
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 6.8e-26 123.6 363 28.9
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 1.1e-23 116.3 99 62.6
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 9.2e-23 113.2 183 42.1
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 1.0e-18 99.8 107 57.0
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 1.1e-15 89.7 113 49.6
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 9.2e-15 86.7 103 52.4
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 1.6e-14 85.9 107 46.7
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 2.5e-12 78.6 176 28.4
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 2.2e-08 65.5 116 39.7
Hma1.2p1_0868F.1_g230520 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.2e-08 65.5 192 31.2
Solyc02g078320.3 Solanum lycopersicum HOM05D000463 ORTHO05D001294 1.4e-07 62.8 88 35.2
Sopen02g023160 Solanum pennellii HOM05D000463 ORTHO05D001294 1.9e-07 62.4 88 34.1
PGSC0003DMG400029719 Solanum tuberosum HOM05D000463 ORTHO05D001294 1.9e-07 62.4 88 34.1
Peaxi162Scf00736g00046 Petunia axillaris HOM05D000463 ORTHO05D001294 4.1e-07 61.2 101 29.7
ECA236G2819 Erigeron canadensis HOM05D000463 ORTHO05D001294 5.4e-07 60.8 96 30.2
Cpa.g.sc70.72 Carica papaya HOM05D006071 ORTHO05D007462 9.2e-07 60.1 94 38.3
Nitab4.5_0004411g0010 Nicotiana tabacum HOM05D000463 ORTHO05D001294 9.2e-07 60.1 60 38.3
Cfa014606 Carpinus fangiana HOM05D000463 ORTHO05D001294 1.2e-06 59.7 104 29.8
ClCG11G018130 Citrullus lanatus HOM05D000463 ORTHO05D001294 1.2e-06 59.7 60 38.3
Haze_13153 Corylus avellana HOM05D000463 ORTHO05D001294 1.2e-06 59.7 104 29.8
Nitab4.5_0002158g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 1.2e-06 59.7 60 38.3
Zm00001eb427210 Zea mays HOM05D000463 ORTHO05D001294 1.6e-06 59.3 64 37.5
Zm00001eb075760 Zea mays HOM05D000463 ORTHO05D001294 4.6e-06 57.8 65 35.4
Actinidia35252 Actinidia chinensis HOM05D000300 ORTHO05D000383 6.0e-06 57.4 61 36.1
Ah.09g237320 Amaranthus hybridus HOM05D000463 ORTHO05D001294 6.0e-06 57.4 61 34.4
BcaC04g23967 Brassica carinata HOM05D000463 ORTHO05D001294 6.0e-06 57.4 60 40.0
C09p02880 Brassica napus HOM05D000463 ORTHO05D001294 6.0e-06 57.4 60 40.0
BolC9t53213H Brassica oleracea HOM05D000463 ORTHO05D001294 6.0e-06 57.4 60 40.0
MELO3C016706.2 Cucumis melo HOM05D000463 ORTHO05D001294 6.0e-06 57.4 60 35.0
CsaV3_4G033770 Cucumis sativus L. HOM05D000463 ORTHO05D001294 6.0e-06 57.4 60 35.0
FvH4_6g26170 Fragaria vesca HOM05D000463 ORTHO05D001294 6.0e-06 57.4 116 29.3
Lj8P156T32 Lonicera japonica HOM05D000463 ORTHO05D001294 6.0e-06 57.4 61 36.1
Ah.14g089430 Amaranthus hybridus HOM05D000463 ORTHO05D001294 7.8e-06 57.0 61 34.4
Dinv04312 Davidia involucrata HOM05D000114 ORTHO05D000075 7.8e-06 57.0 77 29.9
Migut.M00816 Erythranthe guttata HOM05D000463 ORTHO05D001294 7.8e-06 57.0 60 38.3


User provided reference genes

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