Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 4.1e-75 285.0 190 100.0
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 2.8e-71 272.3 190 96.3
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 5.2e-70 268.1 190 96.3
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 2.6e-69 265.8 189 94.7
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 3.2e-51 205.7 190 72.6
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 4.8e-47 191.8 197 64.0
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 8.1e-47 191.0 195 59.0
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 2.7e-42 176.0 195 61.5
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 3.5e-42 175.6 200 58.0
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 3.5e-42 175.6 195 65.6
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 3.5e-42 175.6 195 61.0
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 4.6e-42 175.3 193 57.5
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 6.0e-42 174.9 198 58.6
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 6.0e-42 174.9 193 60.6
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 7.9e-42 174.5 195 70.3
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 1.0e-41 174.1 92 93.5
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 1.3e-41 173.7 198 64.6
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 3.0e-41 172.6 194 61.3
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 3.9e-41 172.2 193 58.5
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 5.1e-41 171.8 197 58.9
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 5.1e-41 171.8 197 59.4
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 8.7e-41 171.0 193 59.6
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 1.9e-40 169.9 193 59.1
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 1.9e-40 169.9 190 57.9
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 1.9e-40 169.9 195 60.5
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 7.4e-40 167.9 196 63.3
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 7.4e-40 167.9 197 54.3
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 1.3e-39 167.2 191 58.6
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 4.8e-39 165.2 197 60.4
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 4.8e-39 165.2 199 62.8
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 8.1e-39 164.5 194 65.5
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 1.4e-38 163.7 192 60.9
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 1.4e-38 163.7 199 60.3
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 1.8e-38 163.3 183 67.8
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 1.8e-38 163.3 192 57.8
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 1.8e-38 163.3 196 61.2
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 2.4e-38 162.9 196 69.4
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 3.1e-38 162.5 191 66.5
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 3.1e-38 162.5 190 65.8
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 3.1e-38 162.5 194 61.3
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 3.1e-38 162.5 188 58.5
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 5.3e-38 161.8 200 64.0
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 9.0e-38 161.0 196 59.2
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 1.5e-37 160.2 197 63.5
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 2.0e-37 159.8 193 56.0
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 2.6e-37 159.5 186 59.7
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 3.4e-37 159.1 191 67.5
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 4.5e-37 158.7 193 61.1
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 5.8e-37 158.3 191 64.4
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 5.8e-37 158.3 193 55.4
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 5.8e-37 158.3 189 58.7
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 7.6e-37 157.9 191 67.5
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 7.6e-37 157.9 191 66.5
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 1.0e-36 157.5 196 56.1
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 1.7e-36 156.8 200 59.0
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 1.7e-36 156.8 191 65.4
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.7e-36 156.8 195 52.8
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 2.2e-36 156.4 193 55.4
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 2.2e-36 156.4 194 53.1
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 3.8e-36 155.6 191 67.0
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 4.9e-36 155.2 194 53.1
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 4.9e-36 155.2 193 54.4
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 6.5e-36 154.8 195 62.6
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 8.4e-36 154.5 192 60.4
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 1.1e-35 154.1 189 67.2
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.1e-35 154.1 195 54.9
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 1.9e-35 153.3 196 60.7
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.9e-35 153.3 195 52.3
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 2.5e-35 152.9 199 59.3
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 3.2e-35 152.5 188 60.6
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 4.2e-35 152.1 195 61.5
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 5.5e-35 151.8 199 63.8
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 5.5e-35 151.8 186 63.4
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 5.5e-35 151.8 183 56.3
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 5.5e-35 151.8 192 57.8
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 5.5e-35 151.8 199 56.3
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 7.1e-35 151.4 197 61.4
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 9.3e-35 151.0 195 53.3
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 1.2e-34 150.6 190 65.8
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 2.1e-34 149.8 200 51.5
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 4.6e-34 148.7 197 62.9
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 7.9e-34 147.9 196 53.1
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 7.9e-34 147.9 199 55.3
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 7.9e-34 147.9 185 58.9
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 7.9e-34 147.9 192 59.4
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 1.3e-33 147.1 194 56.2
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 1.3e-33 147.1 194 56.2
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 1.3e-33 147.1 194 56.2
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 1.8e-33 146.7 189 65.6
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 1.8e-33 146.7 189 65.6
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 2.3e-33 146.4 199 58.8
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 2.3e-33 146.4 191 66.0
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 3.9e-33 145.6 194 56.2
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 3.9e-33 145.6 194 56.2
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 1.1e-32 144.1 196 60.7
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.1e-32 144.1 195 53.3
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 2.1e-31 139.8 195 62.1
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 8.2e-31 137.9 179 53.6
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 1.1e-30 137.5 192 56.8
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 6.9e-30 134.8 197 62.4
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 4.5e-29 132.1 204 48.0
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 7.2e-27 124.8 115 62.6
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 7.9e-26 121.3 158 70.3
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 8.7e-25 117.9 183 42.6
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 8.7e-25 117.9 192 41.7
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 1.9e-24 116.7 183 54.6
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 2.5e-24 116.3 117 60.7
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 4.3e-24 115.5 181 45.3
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 5.7e-24 115.2 110 58.2
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 7.4e-24 114.8 200 56.5
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 7.4e-24 114.8 115 58.3
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 9.7e-24 114.4 110 58.2
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 2.8e-23 112.8 110 58.2
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 5.3e-22 108.6 115 55.7
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 1.2e-21 107.5 117 53.8
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 2.0e-21 106.7 151 53.0
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 2.9e-20 102.8 192 45.3
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 5.0e-20 102.1 135 54.1
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 5.0e-20 102.1 112 50.9
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 8.5e-20 101.3 193 36.3
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 4.2e-19 99.0 139 53.2
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 4.2e-19 99.0 115 54.8
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 1.2e-18 97.4 115 52.2
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 2.3e-17 93.2 183 39.9
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 8.5e-12 74.7 182 47.8
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 2.5e-11 73.2 106 45.3
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 1.6e-10 70.5 67 59.7
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 2.7e-10 69.7 109 43.1
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 2.3e-09 66.6 115 60.0
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 2.3e-09 66.6 69 55.1
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 2.3e-09 66.6 87 50.6
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 2.0e-08 63.5 64 56.2
Atru.chr6.2684 Acer truncatum HOM05D005729 ORTHO05D007026 7.0e-06 55.1 53 58.5


User provided reference genes

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