Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14888 Corylus avellana HOM05D003418 ORTHO05D004105 2.4e-60 235.3 123 100.0
Cfa007215 Carpinus fangiana HOM05D003418 ORTHO05D004105 6.2e-56 220.7 120 94.2
CiPaw.03G057000 Carya illinoinensis HOM05D003418 ORTHO05D004105 5.1e-34 147.9 127 64.6
SalBow7G0626 Salvia bowleyana HOM05D003418 ORTHO05D004105 1.3e-26 123.2 119 62.2
TAR374G1678 Trochodendron aralioides HOM05D003418 ORTHO05D004105 3.7e-24 115.2 127 52.8
SGA_v2.0_scaffold253G45188 Striga asiatica HOM05D003418 ORTHO05D004105 6.3e-24 114.4 128 54.7
TAR629G2062 Trochodendron aralioides HOM05D003418 ORTHO05D004105 8.2e-24 114.0 127 52.8
Nn3g16424 Nelumbo nucifera HOM05D003418 ORTHO05D004105 1.1e-23 113.6 124 53.2
Cc07_g00970 Coffea canephora HOM05D003418 ORTHO05D004105 4.1e-23 111.7 125 55.2
CANSAT64G1003 Cannabis sativa HOM05D003418 ORTHO05D004105 2.6e-22 109.0 148 48.6
AUR62017773 Chenopodium quinoa HOM05D003418 ORTHO05D004105 5.9e-22 107.8 125 52.0
Rhsim08G0042100 Rhododendron simsii HOM05D003418 ORTHO05D004105 5.9e-22 107.8 123 53.7
CANSAT01G2188 Cannabis sativa HOM05D003418 ORTHO05D004105 2.9e-21 105.5 129 50.4
Nn4g22281 Nelumbo nucifera HOM05D003418 ORTHO05D004105 3.8e-21 105.1 126 50.8
Dinv11681 Davidia involucrata HOM05D003418 ORTHO05D004105 6.5e-21 104.4 133 47.4
Dinv17578 Davidia involucrata HOM05D003418 ORTHO05D004105 1.9e-20 102.8 133 47.4
Actinidia04435 Actinidia chinensis HOM05D003418 ORTHO05D004105 2.5e-20 102.4 113 56.6
Ca_16446_v3 Cicer arietinum L. HOM05D003418 ORTHO05D004105 9.3e-20 100.5 119 50.4
MBI11_g22683_MAGBIO Magnolia biondii HOM05D003418 ORTHO05D004105 1.6e-19 99.8 103 58.3
Phvul.001G263300 Phaseolus vulgaris HOM05D003418 ORTHO05D004105 2.1e-19 99.4 119 47.9
Haze_12439 Corylus avellana HOM05D003418 ORTHO05D004105 2.7e-19 99.0 133 45.9
SalBow4G0150 Salvia bowleyana HOM05D003418 ORTHO05D004105 6.1e-19 97.8 124 48.4
DCAR_024672 Daucus carota HOM05D003418 ORTHO05D004105 7.9e-19 97.4 111 54.1
Duzib268G0386 Durio zibethinus HOM05D003418 ORTHO05D004105 7.9e-19 97.4 126 49.2
Sc11g0000380 Simmondsia chinensis HOM05D003418 ORTHO05D004105 1.0e-18 97.1 139 43.2
CSS0043963 Camellia sinensis var. sinensis HOM05D003418 ORTHO05D004105 1.4e-18 96.7 115 53.0
Glyma.18G004900 Glycine max HOM05D003418 ORTHO05D004105 2.3e-18 95.9 117 50.4
Migut.K00956 Erythranthe guttata HOM05D003418 ORTHO05D004105 3.0e-18 95.5 126 43.7
Gohir.D12G153300 Gossypium hirsutum HOM05D003418 ORTHO05D004105 3.0e-18 95.5 124 49.2
Prupe.1G223700 Prunus persica HOM05D003418 ORTHO05D004105 3.0e-18 95.5 119 48.7
SalBow4G1936 Salvia bowleyana HOM05D003418 ORTHO05D004105 3.0e-18 95.5 124 47.6
CiPaw.05G107800 Carya illinoinensis HOM05D003418 ORTHO05D004105 3.9e-18 95.1 130 46.2
Duzib248G1492 Durio zibethinus HOM05D003418 ORTHO05D004105 3.9e-18 95.1 124 47.6
Gohir.A12G149400 Gossypium hirsutum HOM05D003418 ORTHO05D004105 5.1e-18 94.7 124 49.2
Gorai.008G165800 Gossypium raimondii HOM05D003418 ORTHO05D004105 5.1e-18 94.7 124 49.2
Manes.13G009900 Manihot esculenta HOM05D003418 ORTHO05D004105 5.1e-18 94.7 126 44.4
Cc11_g17090 Coffea canephora HOM05D003418 ORTHO05D004105 6.7e-18 94.4 125 47.2
CsaV3_4G002780 Cucumis sativus L. HOM05D003418 ORTHO05D004105 6.7e-18 94.4 118 48.3
Duzib251G0418 Durio zibethinus HOM05D003418 ORTHO05D004105 6.7e-18 94.4 126 51.6
THA.LOC104807144 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 8.8e-18 94.0 129 47.3
THA.LOC104809188 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 8.8e-18 94.0 129 47.3
THA.LOC104822793 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 8.8e-18 94.0 129 47.3
CiPaw.06G104400 Carya illinoinensis HOM05D003418 ORTHO05D004105 1.1e-17 93.6 130 43.8
Nitab4.5_0000340g0030 Nicotiana tabacum HOM05D003418 ORTHO05D004105 1.1e-17 93.6 113 46.9
THA.LOC104807496 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 1.9e-17 92.8 132 43.2
Actinidia08059 Actinidia chinensis HOM05D003418 ORTHO05D004105 2.5e-17 92.4 134 45.5
EL10Ac6g15425 Beta vulgaris HOM05D000704 ORTHO05D000526 2.5e-17 92.4 115 51.3
MD13G1121400 Malus domestica HOM05D003418 ORTHO05D004105 2.5e-17 92.4 131 43.5
TPR.G17778 Trifolium pratense HOM05D003418 ORTHO05D004105 2.5e-17 92.4 126 43.7
TWI36G1005 Tripterygium wilfordii HOM05D003418 ORTHO05D004105 3.3e-17 92.0 125 48.8
MD16G1121700 Malus domestica HOM05D003418 ORTHO05D004105 4.3e-17 91.7 132 43.2
TWI18G0155 Tripterygium wilfordii HOM05D003418 ORTHO05D004105 4.3e-17 91.7 118 51.7
Carub.0001s2582 Capsella rubella HOM05D003418 ORTHO05D004105 5.7e-17 91.3 128 43.0
ClCG07G015190 Citrullus lanatus HOM05D003418 ORTHO05D004105 5.7e-17 91.3 127 45.7
Ciclev10032970m.g Citrus clementina HOM05D003418 ORTHO05D004105 5.7e-17 91.3 114 47.4
Potri.003G170300 Populus trichocarpa HOM05D003418 ORTHO05D004105 5.7e-17 91.3 122 48.4
THA.LOC104825492 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 5.7e-17 91.3 127 43.3
Ciclev10017602m.g Citrus clementina HOM05D003418 ORTHO05D004105 7.4e-17 90.9 111 50.5
Nitab4.5_0005872g0010 Nicotiana tabacum HOM05D003418 ORTHO05D004105 7.4e-17 90.9 114 43.9
AL1G40690 Arabidopsis lyrata HOM05D003418 ORTHO05D004105 9.7e-17 90.5 115 48.7
CsaV3_6G008230 Cucumis sativus L. HOM05D003418 ORTHO05D004105 1.3e-16 90.1 120 45.0
Hma1.2p1_0065F.1_g035230 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 1.3e-16 90.1 124 47.6
MELO3C017764.2 Cucumis melo HOM05D003418 ORTHO05D004105 1.7e-16 89.7 110 49.1
Glyma.19G093400 Glycine max HOM05D003418 ORTHO05D004105 1.7e-16 89.7 137 42.3
Nitab4.5_0000067g0190 Nicotiana tabacum HOM05D003418 ORTHO05D004105 1.7e-16 89.7 116 47.4
RcHm_v2.0_Chr4g0429941 Rosa chinensis HOM05D003418 ORTHO05D004105 1.7e-16 89.7 136 42.6
Aa31LG7G9910 Aethionema arabicum HOM05D003418 ORTHO05D004105 2.2e-16 89.4 127 44.1
CARHR026860 Cardamine hirsuta HOM05D003418 ORTHO05D004105 2.2e-16 89.4 125 44.0
MELO3C022314.2 Cucumis melo HOM05D003418 ORTHO05D004105 2.2e-16 89.4 120 45.0
Glyma.11G252200 Glycine max HOM05D003418 ORTHO05D004105 2.2e-16 89.4 127 44.1
Lsat_1_v5_gn_4_781 Lactuca sativa HOM05D003418 ORTHO05D004105 2.2e-16 89.4 124 45.2
Oeu056671.1 Olea europaea HOM05D003418 ORTHO05D004105 2.2e-16 89.4 116 46.6
arahy.Tifrunner.gnm1.ann1.R9UC9A Arachis hypogaea HOM05D003418 ORTHO05D004105 2.8e-16 89.0 123 48.0
Hma1.2p1_0275F.1_g110610 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 3.7e-16 88.6 118 48.3
CAN.G7.14 Capsicum annuum HOM05D003418 ORTHO05D004105 6.3e-16 87.8 120 46.7
Cpa.g.sc43.80 Carica papaya HOM05D003418 ORTHO05D004105 6.3e-16 87.8 126 45.2
Lj6g0011251 Lotus japonicus HOM05D003418 ORTHO05D004105 6.3e-16 87.8 111 47.7
Medtr3g084990 Medicago truncatula HOM05D003418 ORTHO05D004105 6.3e-16 87.8 121 44.6
PSO017G5305 Papaver somniferum HOM05D003418 ORTHO05D004105 6.3e-16 87.8 116 50.0
Phvul.L003346 Phaseolus vulgaris HOM05D003418 ORTHO05D004105 6.3e-16 87.8 111 49.5
Potri.001G058100 Populus trichocarpa HOM05D003418 ORTHO05D004105 6.3e-16 87.8 123 48.0
FvH4_4g23540 Fragaria vesca HOM05D003418 ORTHO05D004105 8.2e-16 87.4 125 44.8
Gorai.005G165100 Gossypium raimondii HOM05D003418 ORTHO05D004105 8.2e-16 87.4 128 44.5
Oeu049146.3 Olea europaea HOM05D003418 ORTHO05D004105 8.2e-16 87.4 123 42.3
PGR119G0689 Punica granatum HOM05D003418 ORTHO05D004105 8.2e-16 87.4 127 44.1
QL03p052131 Quercus lobata HOM05D003418 ORTHO05D004105 8.2e-16 87.4 132 41.7
Solyc05g015710.3 Solanum lycopersicum HOM05D003418 ORTHO05D004105 8.2e-16 87.4 117 46.2
Aqoxy3G01580 Aquilegia oxysepala HOM05D003418 ORTHO05D004105 1.4e-15 86.7 128 43.8
AT1G27290 Arabidopsis thaliana HOM05D003418 ORTHO05D004105 1.4e-15 86.7 121 46.3
Actinidia09637 Actinidia chinensis HOM05D003418 ORTHO05D004105 1.8e-15 86.3 128 46.9
arahy.Tifrunner.gnm1.ann1.V484X6 Arachis hypogaea HOM05D003418 ORTHO05D004105 1.8e-15 86.3 124 46.8
MSTRG.8015 Avicennia marina HOM05D003418 ORTHO05D004105 1.8e-15 86.3 122 42.6
Gohir.A03G125000 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.8e-15 86.3 128 44.5
Sopen05g011160 Solanum pennellii HOM05D003418 ORTHO05D004105 1.8e-15 86.3 117 45.3
EL10Ac6g13525 Beta vulgaris HOM05D003418 ORTHO05D004105 2.4e-15 85.9 122 47.5
FAN17G2596 Fragaria x ananassa HOM05D003418 ORTHO05D004105 2.4e-15 85.9 125 44.0
PSO478G5262 Papaver somniferum HOM05D003418 ORTHO05D004105 2.4e-15 85.9 117 47.0
Lsat_1_v5_gn_3_30720 Lactuca sativa HOM05D000660 ORTHO05D000766 3.1e-15 85.5 114 47.4
Thecc.02G204700 Theobroma cacao HOM05D003418 ORTHO05D004105 3.1e-15 85.5 125 44.8
Thhalv10009048m.g Eutrema salsugineum HOM05D003418 ORTHO05D004105 4.1e-15 85.1 124 43.5
SalBow8G1362 Salvia bowleyana HOM05D003418 ORTHO05D004105 4.1e-15 85.1 101 49.5
SHI04041 Sapria himalayana HOM05D000704 ORTHO05D000526 4.1e-15 85.1 103 51.5
Glyma.05G148600 Glycine max HOM05D003418 ORTHO05D004105 5.3e-15 84.7 109 49.5
HanXRQChr05g0128721 Helianthus annuus HOM05D003418 ORTHO05D004105 5.3e-15 84.7 119 47.9
Psat5g098080 Pisum sativum HOM05D003418 ORTHO05D004105 5.3e-15 84.7 121 43.8
PGSC0003DMG400013209 Solanum tuberosum HOM05D003418 ORTHO05D004105 5.3e-15 84.7 120 43.3
SGA_v2.0_scaffold87G27173 Striga asiatica HOM05D003418 ORTHO05D004105 5.3e-15 84.7 122 42.6
Medtr8g097040 Medicago truncatula HOM05D003418 ORTHO05D004105 6.9e-15 84.3 125 43.2
PGSC0003DMG401021901 Solanum tuberosum HOM05D003418 ORTHO05D004105 6.9e-15 84.3 117 44.4
Ca_18018_v3 Cicer arietinum L. HOM05D003418 ORTHO05D004105 9.1e-15 84.0 122 43.4
unitig_22.g6403 Utricularia gibba HOM05D003418 ORTHO05D003127 9.1e-15 84.0 116 44.8
BolC7t42298H Brassica oleracea HOM05D003418 ORTHO05D004105 1.2e-14 83.6 127 41.7
Sabra01G0041900 Salix brachista HOM05D003418 ORTHO05D004105 1.2e-14 83.6 116 45.7
VMungo0251G0083 Vigna mungo HOM05D003418 ORTHO05D004105 1.2e-14 83.6 109 48.6
Psat7g077520 Pisum sativum HOM05D003418 ORTHO05D004105 2.0e-14 82.8 123 42.3
SalBow2G0507 Salvia bowleyana HOM05D003418 ORTHO05D004105 2.0e-14 82.8 110 44.5
MSTRG.492 Avicennia marina HOM05D003418 ORTHO05D004105 2.6e-14 82.4 124 41.1
Eucgr.I01636 Eucalyptus grandis HOM05D003418 ORTHO05D004105 2.6e-14 82.4 110 49.1
FAN12G4113 Fragaria x ananassa HOM05D003418 ORTHO05D004105 2.6e-14 82.4 122 44.3
Lsat_1_v5_gn_2_93281 Lactuca sativa HOM05D003418 ORTHO05D004105 2.6e-14 82.4 119 45.4
Manes.12G009300 Manihot esculenta HOM05D003418 ORTHO05D004105 2.6e-14 82.4 124 42.7
Sed0008687 Sechium edule HOM05D003418 ORTHO05D004105 2.6e-14 82.4 119 43.7
Hund25475 Selenicereus undatus HOM05D003418 ORTHO05D004105 2.6e-14 82.4 119 44.5
FAN07G2322 Fragaria x ananassa HOM05D003418 ORTHO05D004105 5.9e-14 81.3 124 43.5
Gohir.D05G311100 Gossypium hirsutum HOM05D003418 ORTHO05D004105 5.9e-14 81.3 105 44.8
MBI07_g11273_MAGBIO Magnolia biondii HOM05D003418 ORTHO05D004105 5.9e-14 81.3 100 50.0
BcaC05g26544 Brassica carinata HOM05D003418 ORTHO05D004105 7.7e-14 80.9 112 43.8
A07p11990 Brassica napus HOM05D003418 ORTHO05D004105 7.7e-14 80.9 125 43.2
Cpa.g.sc171.2 Carica papaya HOM05D003418 ORTHO05D004105 7.7e-14 80.9 132 41.7
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 7.7e-14 80.9 135 42.2
Gohir.D02G147400 Gossypium hirsutum HOM05D003418 ORTHO05D004105 7.7e-14 80.9 128 42.2
Oeu004464.1 Olea europaea HOM05D003418 ORTHO05D004105 7.7e-14 80.9 109 49.5
Gorai.009G332100 Gossypium raimondii HOM05D003418 ORTHO05D004105 1.0e-13 80.5 105 44.8
HanXRQChr06g0174711 Helianthus annuus HOM05D003418 ORTHO05D004105 1.0e-13 80.5 128 45.3
Medtr7g028805 Medicago truncatula HOM05D003418 ORTHO05D004105 1.0e-13 80.5 126 45.2
Gohir.A05G310300 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.3e-13 80.1 105 45.7
Atru.chr11.2346 Acer truncatum HOM05D003418 ORTHO05D004105 1.7e-13 79.7 124 39.5
C07p17920 Brassica napus HOM05D003418 ORTHO05D004105 1.7e-13 79.7 125 41.6
BraA08t34595Z Brassica rapa HOM05D003418 ORTHO05D004105 2.2e-13 79.3 114 45.6
BcaB03g14004 Brassica carinata HOM05D003418 ORTHO05D004105 2.9e-13 79.0 125 40.0
A08p26430 Brassica napus HOM05D003418 ORTHO05D004105 2.9e-13 79.0 114 45.6
BolC3t19656H Brassica oleracea HOM05D003418 ORTHO05D004105 2.9e-13 79.0 114 45.6
CDE02G2290 Ceratophyllum demersum HOM05D003418 ORTHO05D004105 2.9e-13 79.0 137 40.9
C03p73650 Brassica napus HOM05D003418 ORTHO05D004105 3.8e-13 78.6 114 43.9
BraA07t28984Z Brassica rapa HOM05D003418 ORTHO05D004105 3.8e-13 78.6 121 43.0
TPR.G17100 Trifolium pratense HOM05D003418 ORTHO05D004105 5.0e-13 78.2 118 41.5
TPR.G29062 Trifolium pratense HOM05D003418 ORTHO05D004105 6.5e-13 77.8 120 43.3
ATR0561G224 Amborella trichopoda HOM05D003418 ORTHO05D004105 8.5e-13 77.4 111 45.9
arahy.Tifrunner.gnm1.ann1.V4TZMI Arachis hypogaea HOM05D003418 ORTHO05D004105 1.1e-12 77.0 110 46.4
arahy.Tifrunner.gnm1.ann1.XFVS70 Arachis hypogaea HOM05D003418 ORTHO05D004105 1.1e-12 77.0 110 46.4
Migut.K01474 Erythranthe guttata HOM05D003418 ORTHO05D004105 1.1e-12 77.0 96 54.2
Lj4g0014081 Lotus japonicus HOM05D003418 ORTHO05D004105 1.1e-12 77.0 126 41.3
Sed0026789 Sechium edule HOM05D003418 ORTHO05D004105 1.1e-12 77.0 109 45.0
HanXRQChr07g0198161 Helianthus annuus HOM05D003418 ORTHO05D004105 1.4e-12 76.6 112 46.4
Rhsim12G0093300 Rhododendron simsii HOM05D003418 ORTHO05D004105 2.5e-12 75.9 115 44.3
C05p25990 Brassica napus HOM05D003418 ORTHO05D004105 3.2e-12 75.5 111 42.3
PGR102G1973 Punica granatum HOM05D003418 ORTHO05D004105 3.2e-12 75.5 123 42.3
BcaB03g12071 Brassica carinata HOM05D003418 ORTHO05D004105 4.2e-12 75.1 117 43.6
PSO017G5034 Papaver somniferum HOM05D003418 ORTHO05D004105 5.5e-12 74.7 130 39.2
unitig_8.g3133 Utricularia gibba HOM05D003418 ORTHO05D004105 5.5e-12 74.7 116 41.4
CSS0019501 Camellia sinensis var. sinensis HOM05D003418 ORTHO05D004105 1.2e-11 73.6 128 43.0
Hma1.2p1_1057F.1_g252730 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 1.2e-11 73.6 62 67.7
Sed0009671 Sechium edule HOM05D003418 ORTHO05D004105 1.2e-11 73.6 120 38.3
Thecc.04G039200 Theobroma cacao HOM05D003418 ORTHO05D004105 1.2e-11 73.6 119 42.0
Eucgr.H04620 Eucalyptus grandis HOM05D003418 ORTHO05D004105 1.6e-11 73.2 120 40.8
Lj1g0017862 Lotus japonicus HOM05D003418 ORTHO05D004105 1.6e-11 73.2 119 44.5
PSO478G1430 Papaver somniferum HOM05D003418 ORTHO05D004105 2.7e-11 72.4 130 39.2
Nitab4.5_0012747g0020 Nicotiana tabacum HOM05D003418 ORTHO05D004105 3.6e-11 72.0 94 47.9
HPP92_025259 Vanilla planifolia HOM05D003418 ORTHO05D004105 6.1e-11 71.2 109 43.1
Peaxi162Scf00518g00025 Petunia axillaris HOM05D003418 ORTHO05D004105 1.4e-10 70.1 126 38.9
Zm00001eb102460 Zea mays HOM05D003418 ORTHO05D004105 1.8e-10 69.7 115 42.6
Aqoxy5G03322 Aquilegia oxysepala HOM05D003418 ORTHO05D004105 8.8e-10 67.4 104 46.2
SGA_v2.0_scaffold391G50621 Striga asiatica HOM05D003418 ORTHO05D004105 8.8e-10 67.4 116 39.7
Gohir.A01G154140 Gossypium hirsutum HOM05D003418 ORTHO05D004105 2.6e-09 65.9 126 37.3
Lalb_Chr07g0187041 Lupinus albus HOM05D003418 ORTHO05D004105 2.6e-09 65.9 97 44.3
Gorai.002G181900 Gossypium raimondii HOM05D003418 ORTHO05D004105 7.4e-09 64.3 116 38.8
Gohir.D01G146200 Gossypium hirsutum HOM05D003418 ORTHO05D004105 9.7e-09 63.9 116 38.8
Sopen04g016940 Solanum pennellii HOM05D003418 ORTHO05D004105 2.8e-08 62.4 74 50.0
Zm00001eb364310 Zea mays HOM05D003418 ORTHO05D011080 2.8e-08 62.4 101 44.6
Lalb_Chr23g0278191 Lupinus albus HOM05D003418 ORTHO05D004105 3.7e-08 62.0 108 38.0
Os09g0507400 Oryza sativa ssp. japonica HOM05D003418 ORTHO05D004105 1.4e-07 60.1 108 42.6
unitig_26.g10403 Utricularia gibba HOM05D003418 ORTHO05D004105 5.3e-07 58.2 84 42.9
Ah.03g136010 Amaranthus hybridus HOM05D003418 ORTHO05D004105 2.6e-06 55.8 92 42.4
Lalb_Chr12g0206031 Lupinus albus HOM05D003418 ORTHO05D004105 5.9e-06 54.7 97 40.2
unitig_749.g13308 Utricularia gibba HOM05D003418 ORTHO05D004105 5.9e-06 54.7 106 36.8


User provided reference genes

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