Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14876 Corylus avellana HOM05D006526 ORTHO05D008496 2.9e-171 605.1 309 100.0
Cfa007227 Carpinus fangiana HOM05D006526 ORTHO05D008496 4.9e-134 481.5 311 81.7
CiPaw.03G055600 Carya illinoinensis HOM05D006526 ORTHO05D008496 1.3e-110 403.7 324 68.5
Sabra16G0211400 Salix brachista HOM05D006526 ORTHO05D008496 1.1e-96 357.5 311 63.3
Potri.001G330100 Populus trichocarpa HOM05D006526 ORTHO05D008496 1.8e-96 356.7 317 63.4
Duzib147G1379 Durio zibethinus HOM05D006526 ORTHO05D008496 6.9e-96 354.8 300 65.0
Thecc.04G036000 Theobroma cacao HOM05D006526 ORTHO05D008496 1.2e-95 354.0 315 62.5
Dinv33336 Davidia involucrata HOM05D006526 ORTHO05D008496 6.5e-94 348.2 342 58.5
Prupe.3G306300 Prunus persica HOM05D006526 ORTHO05D008496 1.1e-93 347.4 302 63.9
COL.COLO4_13261 Corchorus olitorius HOM05D006526 ORTHO05D008496 3.2e-93 345.9 315 62.5
Manes.15G161000 Manihot esculenta HOM05D006526 ORTHO05D008496 2.1e-92 343.2 295 65.8
RcHm_v2.0_Chr2g0175561 Rosa chinensis HOM05D006526 ORTHO05D008496 3.5e-92 342.4 302 62.9
Gohir.A09G035700 Gossypium hirsutum HOM05D006526 ORTHO05D008496 4.6e-92 342.0 294 63.3
MD09G1010800 Malus domestica HOM05D006526 ORTHO05D008496 6.7e-91 338.2 306 61.1
Gohir.D09G036900 Gossypium hirsutum HOM05D006526 ORTHO05D008496 9.7e-90 334.3 299 62.9
Ciclev10015967m.g Citrus clementina HOM05D006526 ORTHO05D008496 2.2e-89 333.2 281 64.4
PGR042G1209 Punica granatum HOM05D006526 ORTHO05D008496 3.7e-89 332.4 306 62.1
Gorai.006G042000 Gossypium raimondii HOM05D006526 ORTHO05D008496 1.1e-88 330.9 299 62.5
FvH4_6g53521 Fragaria vesca HOM05D006526 ORTHO05D008496 1.8e-88 330.1 302 60.3
ClCG05G013530 Citrullus lanatus HOM05D006526 ORTHO05D008496 1.5e-87 327.0 295 61.7
FAN09G0514 Fragaria x ananassa HOM05D002875 ORTHO05D003215 2.0e-87 326.6 296 61.1
Hma1.2p1_1278F.1_g272280 Hydrangea macrophylla HOM05D006526 ORTHO05D008496 4.5e-87 325.5 310 60.0
Oeu005097.1 Olea europaea HOM05D006526 ORTHO05D008496 5.9e-87 325.1 269 62.5
TWI56G1218 Tripterygium wilfordii HOM05D006526 ORTHO05D008496 7.7e-87 324.7 308 59.1
MELO3C014888.2 Cucumis melo HOM05D006526 ORTHO05D008496 1.7e-86 323.6 274 63.5
Eucgr.J02351 Eucalyptus grandis HOM05D006526 ORTHO05D008496 2.9e-86 322.8 271 63.8
GSVIVG01033093001 Vitis vinifera HOM05D006526 ORTHO05D008496 3.8e-86 322.4 277 63.5
Aa31LG5G11040 Aethionema arabicum HOM05D006526 ORTHO05D008496 6.5e-86 321.6 297 58.6
CsaV3_3G027000 Cucumis sativus L. HOM05D006526 ORTHO05D008496 1.4e-85 320.5 274 62.8
Actinidia05903 Actinidia chinensis HOM05D006526 ORTHO05D008496 3.6e-84 315.8 306 58.8
Cpa.g.sc171.15 Carica papaya HOM05D006526 ORTHO05D008496 3.6e-84 315.8 277 62.5
Atru.chr6.2570 Acer truncatum HOM05D006526 ORTHO05D008496 1.0e-83 314.3 325 57.5
THA.LOC104821121 Tarenaya hassleriana HOM05D006526 ORTHO05D008496 1.0e-83 314.3 273 63.4
Peaxi162Scf00420g00560 Petunia axillaris HOM05D006526 ORTHO05D008496 1.8e-83 313.5 243 66.7
CANSAT64G1234 Cannabis sativa HOM05D006526 ORTHO05D008496 3.0e-83 312.8 302 58.6
Migut.K01466 Erythranthe guttata HOM05D006526 ORTHO05D008496 6.7e-83 311.6 300 56.7
Sopen02g038780 Solanum pennellii HOM05D006526 ORTHO05D008496 6.7e-83 311.6 306 56.5
Lj1g0010270 Lotus japonicus HOM05D006526 ORTHO05D008496 8.8e-83 311.2 290 59.3
Solyc02g094150.4 Solanum lycopersicum HOM05D006526 ORTHO05D008496 8.8e-83 311.2 306 56.5
CAN.G473.100 Capsicum annuum HOM05D006526 ORTHO05D008496 1.1e-82 310.8 311 55.0
Actinidia36203 Actinidia chinensis HOM05D006526 ORTHO05D008496 1.5e-82 310.5 303 57.4
Nitab4.5_0002050g0140 Nicotiana tabacum HOM05D006526 ORTHO05D008496 2.0e-82 310.1 283 58.3
Rhsim10G0006300 Rhododendron simsii HOM05D006526 ORTHO05D008496 2.0e-82 310.1 276 62.0
arahy.Tifrunner.gnm1.ann1.4N5YWB Arachis hypogaea HOM05D006526 ORTHO05D008496 5.7e-82 308.5 294 56.5
Glyma.19G091200 Glycine max HOM05D006526 ORTHO05D008496 5.7e-82 308.5 266 62.0
arahy.Tifrunner.gnm1.ann1.C96CVE Arachis hypogaea HOM05D006526 ORTHO05D008496 7.4e-82 308.1 294 56.5
Phvul.001G093500 Phaseolus vulgaris HOM05D006526 ORTHO05D008496 9.7e-82 307.8 266 62.0
Nn4g22325 Nelumbo nucifera HOM05D006526 ORTHO05D008496 1.3e-81 307.4 277 60.3
A01p25030 Brassica napus HOM05D006526 ORTHO05D008496 1.7e-81 307.0 294 58.2
AT3G01920 Arabidopsis thaliana HOM05D006526 ORTHO05D008496 2.8e-81 306.2 299 57.5
BraA01t02414Z Brassica rapa HOM05D006526 ORTHO05D008496 3.7e-81 305.8 294 57.8
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 4.8e-81 305.4 316 56.0
Lsat_1_v5_gn_2_93080 Lactuca sativa HOM05D006526 ORTHO05D008496 6.3e-81 305.1 269 60.2
Lalb_Chr14g0363401 Lupinus albus HOM05D006526 ORTHO05D008496 8.2e-81 304.7 261 61.7
SGA_v2.0_scaffold47G17596 Striga asiatica HOM05D006526 ORTHO05D008496 1.4e-80 303.9 317 54.9
BcaC09g49919 Brassica carinata HOM05D006526 ORTHO05D008496 3.1e-80 302.8 280 59.3
C01p31260 Brassica napus HOM05D006526 ORTHO05D008496 3.1e-80 302.8 280 59.3
BolC1t03065H Brassica oleracea HOM05D006526 ORTHO05D008496 3.1e-80 302.8 280 59.3
Carub.0003s0016 Capsella rubella HOM05D006526 ORTHO05D008496 3.1e-80 302.8 296 56.4
Cc07_g00840 Coffea canephora HOM05D006526 ORTHO05D008496 3.1e-80 302.8 314 54.8
AL3G10210 Arabidopsis lyrata HOM05D006526 ORTHO05D008496 1.2e-79 300.8 254 63.0
BcaB05g22967 Brassica carinata HOM05D006526 ORTHO05D008496 1.2e-79 300.8 294 58.2
MSTRG.3258 Avicennia marina HOM05D006526 ORTHO05D008496 5.9e-79 298.5 299 57.2
Nitab4.5_0010204g0040 Nicotiana tabacum HOM05D006526 ORTHO05D008496 7.7e-79 298.1 255 61.6
vmacro05958 Vaccinium macrocarpon HOM05D006526 ORTHO05D008496 1.0e-78 297.7 309 56.0
SalBow7G1947 Salvia bowleyana HOM05D006526 ORTHO05D008496 2.9e-78 296.2 351 51.6
Psat3g163920 Pisum sativum HOM05D006526 ORTHO05D008496 1.2e-76 290.8 254 61.4
ECA238G1207 Erigeron canadensis HOM05D006526 ORTHO05D008496 2.7e-76 289.7 263 57.4
Sp3g00170 Schrenkiella parvula HOM05D006526 ORTHO05D008496 3.6e-76 289.3 273 58.6
ATR0561G126 Amborella trichopoda HOM05D006526 ORTHO05D008496 7.9e-76 288.1 244 63.1
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 1.0e-75 287.7 295 54.6
Thhalv10000573m.g Eutrema salsugineum HOM05D006526 ORTHO05D008496 2.0e-74 283.5 308 55.5
Aqoxy3G01551 Aquilegia oxysepala HOM05D006526 ORTHO05D008496 5.7e-74 282.0 271 54.6
CDE05G2481 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 4.8e-73 278.9 274 56.6
unitig_88.g27695 Utricularia gibba HOM05D006526 ORTHO05D008496 6.3e-73 278.5 261 57.9
CARHR075020 Cardamine hirsuta HOM05D006526 ORTHO05D008496 8.2e-73 278.1 269 56.9
PSO017G5829 Papaver somniferum HOM05D006526 ORTHO05D008496 5.9e-71 271.9 277 56.0
PSO478G2106 Papaver somniferum HOM05D006526 ORTHO05D008496 1.3e-70 270.8 277 55.6
Ah.03g147500 Amaranthus hybridus HOM05D006526 ORTHO05D008496 3.3e-66 256.1 243 56.4
QL02p071425 Quercus lobata HOM05D006526 ORTHO05D008496 2.2e-65 253.4 141 86.5
AUR62003516 Chenopodium quinoa HOM05D006526 ORTHO05D008496 8.2e-65 251.5 273 50.9
Zm00001eb175140 Zea mays HOM05D006526 ORTHO05D008496 1.1e-64 251.1 290 51.0
Hund04346 Selenicereus undatus HOM05D006526 ORTHO05D008496 5.3e-64 248.8 322 46.6
AUR62017828 Chenopodium quinoa HOM05D006526 ORTHO05D008496 3.5e-63 246.1 281 48.8
Os08g0531300 Oryza sativa ssp. japonica HOM05D006526 ORTHO05D008496 1.7e-62 243.8 262 50.4
CDE06G2358 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 2.1e-60 236.9 242 54.5
Pp3c2_22020 Physcomitrium patens HOM05D006526 ORTHO05D008496 1.7e-57 227.3 281 45.2
MBI11_g23476_MAGBIO Magnolia biondii HOM05D006526 ORTHO05D008496 2.2e-57 226.9 294 50.7
AagrBONN_evm.TU.Sc2ySwM_228.1921 Anthoceros agrestis HOM05D006526 ORTHO05D008496 6.3e-57 225.3 275 46.9
Sed0022734 Sechium edule HOM05D006526 ORTHO05D008496 2.9e-54 216.5 192 59.4
CSS0009464 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 1.1e-53 214.5 236 56.4
TPR.G14866 Trifolium pratense HOM05D006526 ORTHO05D008496 2.5e-53 213.4 283 47.3
PGSC0003DMG400020254 Solanum tuberosum HOM05D006526 ORTHO05D008496 3.6e-52 209.5 123 78.0
DCAR_000965 Daucus carota HOM05D006526 ORTHO05D008496 8.8e-51 204.9 123 76.4
SMO137G0097 Selaginella moellendorffii HOM05D006526 ORTHO05D008496 9.8e-50 201.4 262 45.0
BcaB05g22970 Brassica carinata HOM05D006526 ORTHO05D008496 5.4e-48 195.7 142 69.7
VMungo1383G1669 Vigna mungo HOM05D006526 ORTHO05D008496 2.0e-47 193.7 204 56.4
Ca_12965_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 1.1e-45 188.0 214 51.4
FAN05G0398 Fragaria x ananassa HOM05D002875 ORTHO05D003215 3.3e-45 186.4 231 51.9
Sc16g0003120 Simmondsia chinensis HOM05D006526 ORTHO05D008496 2.8e-44 183.3 185 54.6
TAR629G1757 Trochodendron aralioides HOM05D006526 ORTHO05D008496 1.2e-39 167.9 217 49.8
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 1.2e-39 167.9 194 53.1
QL02p071428 Quercus lobata HOM05D006526 ORTHO05D008496 5.0e-38 162.5 119 73.1
Glyma.16G056450 Glycine max HOM05D006526 ORTHO05D008496 1.3e-33 147.9 92 76.1
Cre01.g015950 Chlamydomonas reinhardtii HOM05D006526 ORTHO05D008496 4.9e-33 146.0 251 40.6
ECA236G2817 Erigeron canadensis HOM05D006526 ORTHO05D008496 1.5e-29 134.4 112 58.9
Glyma.16G056500 Glycine max HOM05D006526 ORTHO05D008496 1.8e-27 127.5 155 52.3
FAN02G2201 Fragaria x ananassa HOM05D002323 ORTHO05D002470 8.9e-27 125.2 130 50.8
Medtr7g034590 Medicago truncatula HOM05D006526 ORTHO05D008496 1.3e-25 121.3 226 38.9
Medtr6g045607 Medicago truncatula HOM05D006526 ORTHO05D008496 2.9e-25 120.2 73 75.3
CDE05G0752 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 3.7e-25 119.8 82 69.5
CSS0005086 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 1.2e-23 114.8 106 63.2
MCO14G032 Micromonas commoda HOM05D006526 ORTHO05D008496 6.0e-23 112.5 225 32.9
CDE05G3548 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 8.6e-22 108.6 75 66.7
Ca_12964_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 7.6e-18 95.5 91 59.3
Medtr6g045617 Medicago truncatula HOM05D006526 ORTHO05D008496 2.4e-16 90.5 61 72.1
BcaB05g22969 Brassica carinata HOM05D006526 ORTHO05D008496 8.6e-14 82.0 62 64.5
EL10Ac8g19274 Beta vulgaris HOM05D006526 ORTHO05D008496 1.1e-13 81.6 68 58.8
BraA06t24956Z Brassica rapa HOM05D006526 ORTHO05D024464 1.1e-13 81.6 113 46.9
C08p24000 Brassica napus HOM05D006526 ORTHO05D024464 8.1e-12 75.5 74 60.8
CSS0022358 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 2.0e-10 70.9 53 66.0
QL06p007766 Quercus lobata HOM05D006526 ORTHO05D008496 5.8e-10 69.3 41 80.5
BcaC07g39377 Brassica carinata HOM05D006526 ORTHO05D024464 1.3e-09 68.2 44 77.3
BolC8t50022H Brassica oleracea HOM05D006526 ORTHO05D024464 1.7e-09 67.8 49 71.4
CSS0047032 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 1.7e-09 67.8 72 50.0
A06p18730 Brassica napus HOM05D006526 ORTHO05D024464 6.4e-09 65.9 94 44.7
CDE04G1482 Ceratophyllum demersum HOM05D006526 ORTHO05D003215 6.4e-09 65.9 74 50.0


User provided reference genes

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