Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 2229.9 1169 100.0
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 2200.2 1169 99.0
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 2116.3 1172 94.0
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 2088.2 1170 93.0
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 2062.7 1169 91.3
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 2059.3 1166 91.3
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 2048.9 1167 90.7
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 2031.5 1167 90.4
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 2028.4 1166 89.7
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 2028.1 1165 90.2
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 2022.7 1168 89.7
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 2016.1 1167 89.5
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 2016.1 1169 87.8
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 2014.2 1167 87.3
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 2011.5 1168 89.1
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 2010.7 1169 89.5
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 2006.1 1167 89.2
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 2005.3 1165 88.7
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 2004.9 1168 88.4
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 2003.0 1168 88.2
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 2001.9 1166 88.7
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 2001.9 1165 88.8
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 2000.3 1167 86.6
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1999.9 1166 88.1
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1996.9 1165 88.8
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1996.9 1169 87.7
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1996.9 1169 87.6
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1995.7 1165 88.8
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1995.7 1165 88.8
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1992.2 1166 88.3
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1991.5 1168 86.6
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1990.3 1169 89.1
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1989.9 1165 88.8
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1988.4 1167 88.1
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1988.4 1168 87.4
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1985.7 1166 87.6
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1985.3 1166 87.6
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1983.0 1167 86.4
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1982.2 1166 87.2
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1973.7 1166 87.3
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1973.7 1171 87.6
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1973.7 1167 87.1
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1968.4 1197 85.7
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1968.4 1169 87.4
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1966.4 1203 85.8
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1966.4 1171 86.8
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1964.9 1168 86.2
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1964.9 1168 86.4
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1964.5 1173 87.0
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1964.5 1168 86.4
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1963.7 1168 86.1
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1963.7 1168 86.1
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1961.8 1171 86.1
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1959.5 1179 85.4
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1957.2 1215 83.0
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1955.6 1168 88.1
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1949.1 1091 89.6
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1948.7 1168 86.0
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1942.5 1166 85.9
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1941.4 1167 85.9
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1940.6 1210 83.9
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1939.5 1161 87.2
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1936.8 1177 85.4
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1931.0 1180 85.0
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1930.6 1168 86.1
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1925.2 1169 85.6
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1923.3 1167 85.9
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1920.2 1169 84.7
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1919.1 1172 85.6
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1918.3 1168 85.5
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1918.3 1169 85.8
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1914.8 1168 84.3
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1913.3 1167 85.5
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1913.3 1167 85.5
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1912.5 1167 85.3
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1911.7 1172 85.2
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1911.3 1173 85.3
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1906.7 1167 85.1
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1903.3 1183 84.4
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1903.3 1170 83.6
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1903.3 1097 86.1
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1902.5 1171 84.3
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1890.2 1168 83.6
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1879.0 1098 86.1
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1878.6 1098 85.2
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1876.7 1167 84.3
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1860.1 1190 83.1
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1851.3 1173 83.0
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1851.3 1334 75.3
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1814.3 1182 79.0
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1801.2 1167 77.5
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1778.8 1171 76.9
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1743.4 1167 76.9
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1743.4 1162 77.8
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1713.4 1168 74.8
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1662.1 996 86.0
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1639.4 1166 71.3
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1625.5 1170 76.3
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1623.2 943 88.2
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1622.4 1167 71.1
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1498.8 846 89.5
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1465.3 1171 63.8
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1456.4 1168 65.1
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1430.6 839 86.5
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1410.6 1167 62.2
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1393.3 1169 61.9
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1385.9 1184 61.1
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1370.1 799 86.7
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1294.6 796 81.8
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1222.6 789 78.2
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1156.4 695 85.3
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1117.4 927 61.5
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 2.5e-308 1062.4 1199 47.2
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 2.6e-305 1052.4 660 82.3
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 3.3e-292 1008.8 743 72.7
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 1.8e-290 1003.0 576 89.1
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 3.8e-288 995.3 592 86.8
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 1.4e-277 960.3 545 89.5
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 4.5e-273 945.3 599 82.0
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 4.2e-263 912.1 627 74.5
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 7.2e-263 911.4 523 85.3
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 3.1e-221 773.1 483 84.5
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 3.0e-216 756.5 470 78.9
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 3.1e-213 746.5 401 91.8
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 2.8e-158 563.9 350 88.0
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 6.3e-150 536.2 357 79.3
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 6.8e-112 409.8 282 75.5
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 1.5e-111 408.7 377 56.0
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 2.3e-91 341.7 195 87.2
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 2.2e-62 245.4 169 80.5
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 2.4e-48 198.7 143 75.5
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 2.1e-44 185.7 117 84.6
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 9.5e-37 160.2 102 85.3
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 6.1e-36 157.5 108 80.6
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 1.4e-35 156.4 78 94.9
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 5.7e-34 151.0 87 82.8
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 2.2e-33 149.1 96 80.2
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 6.8e-19 100.9 137 43.8
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 8.9e-19 100.5 159 42.8
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 6.4e-17 94.4 51 84.3
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 8.3e-17 94.0 51 86.3
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.1e-16 93.6 51 86.3
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 7.0e-16 90.9 105 65.7
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 7.0e-16 90.9 84 66.7
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 4.1e-08 65.1 338 27.2
TAR381G0591 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.1e-07 62.8 37 75.7
Manes.10G036656 Manihot esculenta HOM05D005231 ORTHO05D006387 3.0e-06 58.9 57 56.1


User provided reference genes

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