Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 8.1e-149 530.4 272 100.0
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 1.9e-121 439.5 272 86.0
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.4e-105 386.7 273 75.1
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 4.3e-102 375.2 273 74.4
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 4.3e-102 375.2 273 72.9
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 7.0e-92 341.3 272 64.3
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 1.7e-90 336.7 272 66.2
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 8.5e-90 334.3 272 62.9
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.1e-89 334.0 275 63.6
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 1.5e-89 333.6 272 65.8
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.5e-89 332.8 275 63.3
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 3.2e-89 332.4 274 64.2
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 7.2e-89 331.3 274 62.8
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 9.4e-89 330.9 263 66.9
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.1e-88 329.7 273 65.9
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 8.0e-88 327.8 265 67.2
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.4e-87 327.0 275 62.5
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 5.2e-87 325.1 271 64.2
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 6.7e-87 324.7 276 62.7
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 8.8e-87 324.3 305 59.0
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 5.7e-86 321.6 272 61.8
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.3e-85 320.5 265 65.7
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 3.7e-85 318.9 228 71.1
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.1e-84 317.4 227 70.0
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.4e-84 317.0 263 64.3
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 2.4e-84 316.2 273 64.1
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 2.4e-84 316.2 273 63.4
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 2.4e-84 316.2 266 63.5
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 4.1e-84 315.5 228 71.5
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 5.3e-84 315.1 261 66.3
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 7.0e-84 314.7 274 62.8
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 9.1e-84 314.3 263 65.4
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 9.1e-84 314.3 274 61.7
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.6e-83 313.5 274 64.2
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 2.7e-83 312.8 272 62.1
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 2.7e-83 312.8 277 61.4
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 5.9e-83 311.6 272 61.8
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.3e-82 310.5 226 68.6
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.7e-82 310.1 274 63.5
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 2.2e-82 309.7 276 60.5
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.9e-82 309.3 267 62.9
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 5.0e-82 308.5 273 60.4
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 8.5e-82 307.8 274 62.8
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 8.5e-82 307.8 260 61.9
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 8.5e-82 307.8 225 69.3
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 1.9e-81 306.6 230 70.0
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.5e-81 306.2 272 59.2
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 2.5e-81 306.2 263 63.5
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 5.5e-81 305.1 272 58.8
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 7.2e-81 304.7 268 59.3
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 3.6e-80 302.4 268 60.1
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 1.0e-79 300.8 276 60.9
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 3.0e-79 299.3 263 60.1
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 3.0e-79 299.3 272 61.0
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 4.0e-79 298.9 261 61.3
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 4.0e-79 298.9 272 57.7
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 1.5e-78 297.0 274 59.5
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 3.4e-78 295.8 263 59.7
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 7.5e-78 294.7 274 59.1
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 7.5e-78 294.7 274 59.5
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 2.2e-77 293.1 263 63.1
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 2.8e-77 292.7 269 59.9
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 3.7e-77 292.4 255 61.2
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 4.8e-77 292.0 226 67.3
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 4.8e-77 292.0 265 60.4
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 6.3e-77 291.6 275 58.9
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 8.3e-77 291.2 275 58.9
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 1.1e-76 290.8 275 58.2
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 2.4e-76 289.7 260 60.4
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 5.4e-76 288.5 270 60.4
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 1.6e-75 287.0 267 59.2
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 4.5e-75 285.4 269 58.7
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 7.7e-75 284.6 264 55.7
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 2.2e-74 283.1 247 61.5
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 3.8e-74 282.3 263 58.6
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 1.1e-73 280.8 228 64.5
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 1.5e-73 280.4 204 73.5
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 3.2e-73 279.3 226 65.9
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 4.2e-73 278.9 299 53.8
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 4.2e-73 278.9 226 65.0
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 9.4e-73 277.7 225 64.9
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 1.2e-72 277.3 275 55.6
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 2.7e-72 276.2 236 63.1
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 4.7e-72 275.4 274 57.7
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 6.1e-72 275.0 305 51.1
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 8.0e-72 274.6 275 56.7
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 2.3e-71 273.1 266 59.8
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 2.3e-71 273.1 229 65.5
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 3.0e-71 272.7 231 64.9
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 6.8e-71 271.6 285 54.0
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 8.8e-71 271.2 275 56.7
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 1.2e-70 270.8 274 56.9
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 2.6e-70 269.6 295 52.2
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 3.4e-70 269.2 295 51.9
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 5.7e-70 268.5 263 56.7
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 5.7e-70 268.5 262 56.9
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 7.5e-70 268.1 262 56.5
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 1.3e-69 267.3 276 54.3
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 3.7e-69 265.8 234 62.4
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 3.1e-68 262.7 275 53.8
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 3.1e-68 262.7 225 58.7
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 2.0e-67 260.0 263 55.5
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 2.0e-67 260.0 276 55.1
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 3.5e-67 259.2 276 53.3
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 3.5e-67 259.2 276 53.3
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 4.5e-67 258.8 227 60.8
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 4.5e-67 258.8 274 54.4
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 1.0e-66 257.7 276 52.9
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 1.3e-66 257.3 284 54.6
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 8.6e-66 254.6 207 65.7
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 1.1e-65 254.2 195 68.7
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 1.5e-65 253.8 226 56.2
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 1.9e-65 253.4 156 80.1
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 2.5e-65 253.1 275 51.3
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 2.5e-65 253.1 275 51.3
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 4.7e-64 248.8 273 52.0
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 9.8e-62 241.1 230 55.2
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 1.2e-59 234.2 230 53.9
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 5.9e-59 231.9 189 64.6
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 5.9e-59 231.9 207 59.4
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 3.9e-58 229.2 229 57.6
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 8.6e-58 228.0 160 70.6
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 3.5e-51 206.1 243 56.0
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 1.7e-50 203.8 231 49.8
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 3.3e-49 199.5 227 49.3
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 5.6e-49 198.7 235 49.8
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 3.4e-46 189.5 182 54.9
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 3.7e-45 186.0 163 60.1
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 8.3e-45 184.9 168 57.7
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 4.1e-44 182.6 225 45.8
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 3.0e-42 176.4 123 69.9
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 9.5e-41 171.4 128 65.6
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 3.6e-40 169.5 207 51.2
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 7.8e-35 151.8 113 71.7
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.0e-34 151.4 232 41.4
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 5.1e-34 149.1 230 38.7
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 6.6e-34 148.7 243 40.3
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 4.4e-30 136.0 88 69.3
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.4e-28 131.0 120 60.0
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 4.2e-28 129.4 120 60.0
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 1.2e-27 127.9 119 59.7
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 2.1e-27 127.1 148 49.3
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 6.0e-27 125.6 119 54.6
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 8.7e-26 121.7 185 47.0
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 1.8e-23 114.0 121 53.7
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 1.8e-23 114.0 121 53.7
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 1.8e-23 114.0 121 53.7
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 5.6e-17 92.4 116 53.4
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 1.4e-15 87.8 102 47.1
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 6.9e-15 85.5 104 48.1
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 3.4e-14 83.2 259 30.9
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.1e-12 78.2 195 34.9
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 4.6e-11 72.8 77 53.2
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 6.0e-11 72.4 47 74.5
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.1e-09 68.2 59 62.7
PSO782G2536 Papaver somniferum HOM05D004631 ORTHO05D005223 1.2e-06 58.2 69 43.5
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 1.5e-06 57.8 188 27.1
Cre10.g443650 Chlamydomonas reinhardtii HOM05D004631 ORTHO05D005223 1.5e-06 57.8 122 36.9
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 2.0e-06 57.4 35 74.3
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 3.4e-06 56.6 118 33.1
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 7.6e-06 55.5 116 37.1


User provided reference genes

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