Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 2300.0 1148 100.0
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1867.0 1158 83.8
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1643.6 1171 72.7
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1490.7 1177 65.8
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1471.8 1164 65.7
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1469.5 1175 64.7
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1453.7 1172 64.9
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1447.2 1169 65.1
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1430.6 1156 63.8
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1430.2 1171 63.5
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1427.5 1163 64.0
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1423.7 1233 60.8
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1416.7 1172 63.4
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1414.8 1176 64.2
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1414.4 1174 63.1
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1412.1 1169 63.3
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1407.1 1165 63.4
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1400.6 1177 62.7
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1395.6 1169 62.4
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1394.8 1213 61.0
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1393.3 1180 62.8
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1390.6 1173 62.7
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1386.7 1172 61.9
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1384.8 1178 61.8
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1380.5 1172 62.3
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1377.5 1167 60.9
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1377.5 1173 61.6
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1373.6 1167 60.8
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1369.4 1175 61.2
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1368.2 1166 61.8
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1366.7 986 72.2
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1364.7 1178 61.8
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1362.4 1189 61.1
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1352.4 1159 60.7
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1351.7 1173 60.9
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1351.7 1166 60.3
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1351.7 1166 60.5
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1347.0 1172 60.5
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1345.1 1173 60.6
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1343.6 1171 60.5
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1343.6 1159 61.2
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1342.0 1173 60.4
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1340.9 1173 60.7
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1340.5 1171 60.5
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1337.8 1165 60.8
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1333.5 1170 59.7
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1332.8 1163 61.5
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1332.8 1173 61.0
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1332.4 1163 61.5
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1327.8 1170 59.5
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1327.4 1174 59.9
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1317.0 1162 59.3
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1307.0 1157 59.5
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1303.5 1174 59.0
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1303.5 1172 58.5
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1303.1 1171 58.4
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1295.4 1126 61.8
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1294.6 1175 58.4
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1293.1 1147 58.9
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1290.0 1154 58.8
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1283.5 1217 55.5
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1283.5 1168 57.3
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1280.8 1159 58.3
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1280.0 1170 59.8
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1276.2 1164 58.2
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1275.4 1187 57.3
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1270.8 1167 57.3
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1269.2 1165 56.9
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1265.8 1179 57.3
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1265.4 1165 57.1
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1259.2 828 74.9
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1256.5 1163 57.1
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1252.7 1139 59.3
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1252.7 1139 58.9
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1252.7 1139 59.3
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1250.0 1139 58.8
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1250.0 1045 63.1
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1249.6 1150 58.1
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1246.9 1140 58.4
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1246.1 1164 57.6
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1243.8 1139 58.6
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1243.0 1232 53.7
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1242.3 1141 58.1
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1239.9 1137 58.5
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1237.6 1140 57.7
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1237.2 1137 58.4
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1230.7 1165 56.7
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1230.3 1140 57.4
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1229.5 1128 58.4
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 0.0e+00 1221.8 795 75.2
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1217.6 1129 58.0
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1211.8 1142 56.7
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1206.8 1158 56.3
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1200.3 1160 55.8
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1198.7 1141 55.6
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1182.9 997 62.8
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1182.2 851 69.9
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1180.6 994 62.3
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1171.8 1244 51.8
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1164.1 1058 61.2
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1132.1 1173 51.7
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1111.3 1066 55.1
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1079.7 981 59.8
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1075.8 768 69.3
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 3.8e-309 1065.1 1170 50.0
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 4.7e-307 1058.1 931 59.3
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 8.0e-299 1030.8 1142 50.2
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 6.2e-291 1004.6 1204 47.8
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 2.3e-285 986.1 665 73.1
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 5.8e-273 944.9 834 60.6
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 3.6e-267 925.6 1078 48.7
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 8.1e-259 897.9 1177 42.4
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 6.1e-246 855.1 1072 45.4
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 2.8e-243 846.3 1138 41.1
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 4.8e-243 845.5 1201 41.0
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 1.6e-217 760.8 862 48.4
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 7.5e-196 688.7 1010 40.5
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 7.5e-180 635.6 1143 36.6
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 2.0e-172 610.9 424 71.7
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 3.2e-162 577.0 1149 34.9
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 9.3e-162 575.5 477 59.3
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.6e-158 564.7 516 58.1
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 9.4e-122 442.6 331 62.8
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 2.2e-102 378.3 338 57.1
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 8.2e-102 376.3 1151 27.2
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.7e-83 315.5 212 73.1
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 2.1e-81 308.5 550 37.1
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 2.3e-72 278.5 354 46.3
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.9e-70 271.6 376 42.8
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 6.6e-67 260.4 257 54.5
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 6.2e-65 253.8 238 55.5
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.1e-57 228.8 209 56.9
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.4e-56 226.1 223 54.7
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.2e-55 223.0 181 58.0
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 8.9e-48 196.8 419 35.8
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 6.0e-44 184.1 223 47.5
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 6.0e-44 184.1 223 47.5
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 6.0e-44 184.1 223 47.5
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.7e-43 182.6 240 44.2
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.3e-43 182.2 223 47.1
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 5.1e-43 181.0 223 47.1
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 8.7e-43 180.3 143 61.5
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 6.9e-40 170.6 453 29.8
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 5.6e-34 151.0 223 42.6
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 1.9e-26 125.9 379 28.5
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 4.3e-26 124.8 92 62.0
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 1.6e-25 122.9 130 49.2
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 6.2e-25 120.9 242 34.7
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 5.3e-24 117.9 158 43.7
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 5.3e-24 117.9 158 43.7
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 5.3e-24 117.9 158 43.7
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.0e-22 113.6 96 62.5
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.4e-21 109.8 73 68.5
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 4.2e-21 108.2 81 65.4
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 6.3e-17 94.4 318 26.7
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 1.1e-16 93.6 56 69.6
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 1.1e-13 83.6 55 72.7


User provided reference genes

Program Settings