Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 1.7e-219 765.8 405 100.0
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 2.4e-128 463.0 275 84.4
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.2e-119 434.1 330 75.8
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 2.4e-117 426.4 298 73.8
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 9.3e-109 397.9 269 72.5
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.2e-108 397.5 320 74.7
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 1.2e-108 397.5 269 72.1
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 5.1e-107 392.1 260 72.7
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 7.6e-103 378.3 264 70.1
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 7.6e-103 378.3 270 70.0
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 1.7e-102 377.1 264 68.9
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 2.9e-102 376.3 264 69.7
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 2.5e-101 373.2 272 66.5
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 1.2e-100 370.9 269 66.5
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 1.6e-100 370.5 256 69.5
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 2.1e-100 370.2 270 68.9
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 3.6e-100 369.4 268 69.0
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 7.9e-100 368.2 270 67.4
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 7.9e-100 368.2 259 68.3
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 1.0e-99 367.9 265 69.1
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 3.9e-99 365.9 275 66.5
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 3.9e-99 365.9 276 66.7
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 5.1e-99 365.5 258 69.8
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 5.1e-99 365.5 258 69.8
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 6.7e-99 365.2 270 68.1
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 8.8e-99 364.8 266 67.3
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 8.8e-99 364.8 251 69.7
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 1.9e-98 363.6 269 66.9
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 2.5e-98 363.2 266 66.9
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 2.5e-98 363.2 259 67.2
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 4.3e-98 362.5 280 65.0
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 5.7e-98 362.1 251 70.1
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 5.7e-98 362.1 260 70.8
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 7.4e-98 361.7 265 66.8
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 1.3e-97 360.9 275 64.7
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 1.3e-97 360.9 269 67.7
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.7e-97 360.5 270 66.7
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 2.8e-97 359.8 265 66.8
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 3.7e-97 359.4 270 67.4
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 8.2e-97 358.2 268 66.4
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 2.4e-96 356.7 260 67.3
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 4.1e-96 355.9 268 66.8
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 6.9e-96 355.1 260 66.5
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 9.1e-96 354.8 270 65.6
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 1.2e-95 354.4 275 65.8
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 2.0e-95 353.6 261 67.0
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 1.0e-94 351.3 269 64.7
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 2.5e-93 346.7 259 66.8
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 4.2e-93 345.9 269 64.3
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 1.6e-92 344.0 251 67.3
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 2.1e-92 343.6 259 65.3
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 3.6e-92 342.8 266 64.3
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 7.9e-92 341.7 274 63.1
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 7.9e-92 341.7 269 64.3
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 1.0e-91 341.3 269 63.6
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 2.3e-91 340.1 259 64.9
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 3.9e-91 339.3 259 64.1
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 3.9e-91 339.3 268 63.1
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 6.7e-91 338.6 268 63.1
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 1.1e-90 337.8 260 63.8
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 1.5e-90 337.4 264 65.5
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 2.0e-90 337.0 261 65.5
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 2.6e-90 336.7 269 64.3
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 7.4e-90 335.1 251 65.7
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 9.7e-90 334.7 268 63.4
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 2.8e-89 333.2 268 63.8
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 1.1e-88 331.3 259 62.9
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 1.1e-88 331.3 259 62.9
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.4e-88 330.9 252 64.3
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 1.8e-88 330.5 262 63.4
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 1.8e-88 330.5 259 62.5
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 2.4e-88 330.1 259 62.9
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 3.1e-88 329.7 264 62.1
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 3.1e-88 329.7 259 62.5
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 5.3e-88 328.9 259 63.3
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 1.2e-87 327.8 259 62.5
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 1.2e-87 327.8 267 61.8
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 2.0e-87 327.0 259 62.5
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 3.4e-87 326.2 259 61.4
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 3.4e-87 326.2 281 60.1
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 5.9e-87 325.5 268 61.2
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 1.0e-86 324.7 258 62.0
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 2.9e-86 323.2 281 60.1
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 8.5e-86 321.6 259 61.4
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 1.4e-85 320.9 316 54.1
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 2.6e-82 310.1 269 58.7
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 5.7e-82 308.9 258 58.1
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 7.4e-82 308.5 176 83.5
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 9.7e-82 308.1 259 57.9
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 1.1e-80 304.7 268 56.7
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 2.4e-80 303.5 233 64.8
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 3.5e-79 299.7 219 66.7
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 1.3e-78 297.7 269 58.0
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 1.7e-78 297.4 262 59.2
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 1.2e-76 291.2 288 53.5
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 8.0e-76 288.5 177 77.4
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 1.4e-75 287.7 269 55.0
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 1.8e-75 287.3 237 60.8
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 3.0e-75 286.6 231 59.7
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 4.4e-74 282.7 264 56.1
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 1.3e-73 281.2 247 57.9
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 1.3e-73 281.2 247 57.9
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 8.2e-73 278.5 174 74.7
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 8.2e-73 278.5 251 57.0
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 8.2e-73 278.5 176 74.4
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 2.4e-72 276.9 169 78.7
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 1.0e-70 271.6 263 52.9
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 1.3e-70 271.2 260 53.5
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 3.8e-70 269.6 157 82.2
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 8.5e-70 268.5 251 53.8
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 2.1e-68 263.8 274 50.7
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 3.6e-68 263.1 259 50.6
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 3.1e-64 250.0 260 51.9
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 1.3e-62 244.6 216 61.1
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 2.5e-53 213.8 203 56.2
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 9.2e-48 195.3 261 43.7
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 1.5e-45 188.0 120 74.2
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 1.2e-44 184.9 302 37.7
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 8.3e-41 172.2 295 35.3
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 1.1e-40 171.8 167 52.7
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 9.2e-40 168.7 160 53.8
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 9.2e-40 168.7 108 75.0
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 1.1e-37 161.8 123 64.2
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 2.4e-32 144.1 314 32.5
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 6.6e-30 136.0 103 63.1
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 1.1e-29 135.2 72 84.7
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 1.5e-26 124.8 68 83.8
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 3.8e-25 120.2 185 43.8
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 3.8e-25 120.2 71 74.6
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 5.6e-21 106.3 76 64.5
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 4.4e-18 96.7 229 29.3
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 1.4e-16 91.7 71 60.6
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 7.8e-15 85.9 56 67.9
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 9.9e-10 68.9 69 53.6


User provided reference genes

Program Settings