Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 4.7e-123 444.5 219 100.0
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 2.4e-119 432.2 219 96.3
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 2.6e-105 385.6 215 86.0
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 6.6e-101 370.9 219 83.6
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 1.3e-96 356.7 214 79.9
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 2.9e-96 355.5 218 77.5
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 8.4e-96 354.0 215 77.7
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 1.1e-95 353.6 218 78.0
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 1.4e-95 353.2 219 76.7
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 1.6e-94 349.7 214 76.2
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 2.7e-94 349.0 215 76.7
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 7.8e-94 347.4 218 74.8
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 1.0e-93 347.1 218 72.5
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.3e-93 346.7 215 75.8
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 1.7e-93 346.3 219 74.0
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 2.3e-93 345.9 218 73.9
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 3.9e-93 345.1 219 74.4
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 3.9e-93 345.1 215 75.8
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 1.1e-92 343.6 218 71.1
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 1.1e-92 343.6 211 77.3
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 1.5e-92 343.2 219 73.1
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.9e-92 342.8 215 75.8
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 2.5e-92 342.4 219 74.0
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 2.5e-92 342.4 219 73.1
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 2.5e-92 342.4 219 73.1
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 2.5e-92 342.4 215 74.4
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 1.6e-91 339.7 210 76.7
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 1.6e-91 339.7 219 75.3
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 2.1e-91 339.3 219 72.6
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 2.8e-91 339.0 219 70.3
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 2.8e-91 339.0 218 72.0
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 3.6e-91 338.6 219 74.9
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 4.7e-91 338.2 219 72.1
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 6.2e-91 337.8 219 73.1
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 6.2e-91 337.8 219 73.1
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 8.1e-91 337.4 219 72.6
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 8.1e-91 337.4 218 73.4
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 1.4e-90 336.7 219 72.6
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 1.4e-90 336.7 218 71.1
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 4.0e-90 335.1 216 74.1
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 5.2e-90 334.7 219 71.7
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 6.8e-90 334.3 208 73.6
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 8.9e-90 334.0 218 69.7
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 1.5e-89 333.2 216 71.3
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 1.5e-89 333.2 208 73.6
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 2.0e-89 332.8 219 70.3
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 2.0e-89 332.8 214 72.0
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 2.6e-89 332.4 219 71.2
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 2.6e-89 332.4 216 73.1
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 3.4e-89 332.0 218 70.6
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 3.4e-89 332.0 213 71.8
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 4.4e-89 331.6 221 72.9
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 5.8e-89 331.3 216 72.7
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 7.6e-89 330.9 216 72.7
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 3.8e-88 328.6 219 69.9
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 1.1e-87 327.0 216 73.1
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 1.4e-87 326.6 214 70.1
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 1.2e-86 323.6 214 69.2
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 4.6e-86 321.6 214 70.6
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 7.8e-86 320.9 211 73.0
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 1.0e-85 320.5 216 71.8
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 1.0e-85 320.5 215 67.9
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 3.9e-85 318.5 218 70.2
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 6.6e-85 317.8 218 69.3
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 1.5e-84 316.6 219 68.0
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 1.5e-84 316.6 214 67.8
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 2.5e-84 315.8 219 68.9
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 3.3e-84 315.5 219 69.4
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 4.3e-84 315.1 214 68.7
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 5.6e-84 314.7 219 66.7
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 7.3e-84 314.3 219 68.5
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 9.6e-84 313.9 219 68.0
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 1.6e-83 313.2 219 68.9
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 1.6e-83 313.2 219 68.9
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 2.8e-83 312.4 211 69.2
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 2.8e-83 312.4 217 68.7
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 2.8e-83 312.4 217 67.7
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 2.8e-83 312.4 209 69.4
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 1.1e-82 310.5 218 65.6
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 1.8e-82 309.7 215 68.8
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.8e-82 309.7 249 61.8
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.1e-82 308.9 224 65.6
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 4.0e-82 308.5 217 66.8
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 4.0e-82 308.5 217 66.8
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 2.6e-81 305.8 213 68.5
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 5.8e-81 304.7 216 66.7
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 1.3e-80 303.5 217 65.9
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 4.9e-80 301.6 213 66.2
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 7.1e-79 297.7 216 66.2
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 7.1e-79 297.7 207 67.1
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 4.6e-78 295.0 214 64.5
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 4.8e-75 285.0 207 65.2
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.8e-74 283.1 216 63.9
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.9e-74 281.2 192 67.7
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 9.0e-74 280.8 214 60.3
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 2.0e-73 279.6 195 66.2
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 3.4e-73 278.9 215 60.9
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 4.5e-73 278.5 212 62.7
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 2.2e-72 276.2 218 62.4
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 3.2e-71 272.3 194 67.5
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 7.1e-71 271.2 215 60.5
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 2.1e-70 269.6 212 60.4
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 4.6e-70 268.5 199 63.8
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 6.0e-70 268.1 179 72.1
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 9.6e-68 260.8 199 63.3
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 1.1e-66 257.3 205 61.0
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 2.4e-66 256.1 205 58.0
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 1.5e-65 253.4 145 80.7
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 5.8e-65 251.5 206 56.3
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.4e-63 246.9 189 64.0
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 5.5e-63 245.0 167 68.3
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 5.5e-63 245.0 206 56.8
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 3.3e-60 235.7 213 56.8
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 9.6e-60 234.2 213 55.9
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 5.3e-58 228.4 147 70.1
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 3.4e-57 225.7 212 50.0
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 7.6e-57 224.6 213 54.9
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 8.5e-56 221.1 239 50.2
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 3.6e-54 215.7 141 72.3
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.8e-53 213.4 145 66.2
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 5.3e-50 201.8 187 50.8
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 6.5e-48 194.9 127 70.9
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 4.6e-46 188.7 166 53.6
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 1.4e-45 187.2 210 44.8
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 3.9e-45 185.7 176 54.0
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 5.7e-44 181.8 164 54.9
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.4e-41 172.6 208 46.2
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 9.4e-39 164.5 107 71.0
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 5.2e-37 158.7 110 66.4
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 3.1e-26 122.9 231 35.1
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 4.1e-26 122.5 209 37.3
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 2.7e-25 119.8 80 65.0
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 4.5e-25 119.0 73 75.3
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 2.9e-24 116.3 138 48.6
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 6.5e-24 115.2 218 33.9
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 7.2e-23 111.7 74 70.3
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 6.1e-22 108.6 117 51.3
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 6.1e-22 108.6 117 51.3
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 4.0e-21 105.9 117 49.6
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 1.4e-18 97.4 69 65.2
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 2.0e-17 93.6 201 31.3
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 2.9e-16 89.7 200 29.0
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.2e-14 84.3 139 37.4
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 3.6e-14 82.8 176 31.2
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.5e-12 77.4 201 28.4
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 9.8e-12 74.7 108 42.6
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 3.7e-11 72.8 52 65.4
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 6.3e-11 72.0 47 70.2
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 1.1e-10 71.2 40 80.0
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 5.4e-10 68.9 82 51.2
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 9.2e-10 68.2 51 64.7
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 1.6e-09 67.4 82 50.0
PRCOL_00001065 Prasinoderma coloniale HOM05D004605 ORTHO05D005804 3.3e-07 59.7 158 28.5
CAN.G1148.3 Capsicum annuum HOM05D001556 ORTHO05D001505 1.6e-06 57.4 60 51.7


User provided reference genes

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