Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1584.3 862 100.0
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1398.6 861 88.9
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1253.0 852 79.9
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1209.1 879 75.0
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1192.9 890 74.4
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1184.5 869 73.9
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1184.5 873 74.1
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1180.2 867 73.8
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1173.7 867 73.6
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1173.7 869 72.4
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1172.5 884 73.9
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1171.4 868 74.0
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1160.6 872 71.4
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1159.8 866 72.9
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1159.1 875 73.5
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1159.1 863 73.2
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1157.1 874 72.3
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1156.7 865 73.5
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1154.4 870 72.9
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1153.3 886 71.6
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1152.1 878 72.4
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 0.0e+00 1145.2 868 73.4
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 0.0e+00 1144.0 863 72.8
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1142.1 863 72.5
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1142.1 870 71.4
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1141.3 877 72.5
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1139.0 871 71.5
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1138.3 867 70.8
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1133.2 878 70.6
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 0.0e+00 1133.2 866 71.2
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 0.0e+00 1132.9 876 71.3
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1131.7 877 71.4
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1129.8 880 71.2
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1129.8 871 70.8
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 0.0e+00 1129.0 874 71.3
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1125.5 869 70.9
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1125.5 868 70.9
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1120.9 869 71.0
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 0.0e+00 1120.1 862 69.4
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1120.1 880 70.0
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1117.1 828 73.7
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1117.1 921 66.8
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1112.4 877 70.4
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1110.9 865 70.2
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1105.5 872 69.3
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1104.7 864 69.8
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 0.0e+00 1104.0 920 67.4
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1099.7 880 68.2
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1094.0 869 69.0
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1091.3 869 68.8
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 0.0e+00 1090.9 858 69.0
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 0.0e+00 1087.0 859 69.2
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1084.3 859 69.3
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 0.0e+00 1084.3 864 68.1
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 0.0e+00 1083.6 873 68.6
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1083.2 870 68.4
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 0.0e+00 1082.0 860 69.1
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1075.1 870 71.5
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 5.9e-312 1073.9 864 68.4
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 5.3e-311 1070.8 864 65.7
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 8.8e-311 1070.1 874 67.5
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 5.8e-310 1067.4 857 69.0
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 7.6e-310 1067.0 744 77.6
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 2.2e-309 1065.4 859 66.6
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 6.4e-309 1063.9 897 66.6
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 8.4e-309 1063.5 857 68.4
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 8.4e-309 1063.5 857 68.4
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 1.9e-308 1062.4 969 62.8
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 9.3e-308 1060.1 864 65.9
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 6.0e-307 1057.4 857 68.1
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 7.9e-307 1057.0 863 65.9
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 1.0e-306 1056.6 857 68.1
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 1.0e-306 1056.6 857 68.1
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 1.0e-306 1056.6 868 66.9
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 3.9e-306 1054.7 882 66.8
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 3.9e-306 1054.7 876 66.8
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 1.1e-305 1053.1 871 66.1
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 1.9e-305 1052.4 878 66.5
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 1.3e-304 1049.7 879 66.0
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 1.4e-303 1046.2 864 65.5
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 3.1e-303 1045.0 878 64.9
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 2.6e-302 1042.0 879 64.8
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 7.6e-302 1040.4 834 69.1
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 1.0e-301 1040.0 869 65.0
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 1.1e-300 1036.6 870 64.6
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 3.9e-298 1028.1 863 64.1
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 1.1e-297 1026.5 861 64.2
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 4.3e-297 1024.6 871 64.6
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 7.4e-297 1023.8 718 76.6
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 2.0e-294 1015.8 718 76.5
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 3.4e-294 1015.0 718 76.3
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 5.0e-293 1011.1 867 65.5
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 2.3e-290 1002.3 855 63.9
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 2.2e-285 985.7 872 62.6
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 3.6e-283 978.4 855 64.1
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 3.6e-283 978.4 858 63.2
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 1.5e-281 973.0 855 63.5
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 4.8e-280 968.0 872 62.0
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 2.0e-278 962.6 855 63.4
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 1.0e-277 960.3 861 59.9
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 2.2e-277 959.1 869 61.6
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 1.4e-276 956.4 855 62.3
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 4.4e-273 944.9 856 62.0
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 2.0e-262 909.4 866 61.0
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 1.7e-261 906.4 857 60.8
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 5.0e-261 904.8 883 56.9
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 3.0e-250 869.0 888 56.1
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 5.7e-249 864.8 888 55.4
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.3e-245 853.6 864 56.5
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 4.7e-243 845.1 790 62.5
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 8.9e-242 840.9 864 54.4
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 6.4e-224 781.6 708 62.9
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.1e-207 727.6 726 58.1
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 9.9e-201 704.5 872 47.4
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 6.7e-197 691.8 552 69.2
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.2e-174 617.8 917 41.4
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.2e-174 617.8 917 41.4
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.5e-172 610.1 687 53.7
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 8.2e-171 605.1 947 40.9
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 3.7e-163 579.7 598 57.0
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 7.2e-159 565.5 918 39.8
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 2.0e-156 557.4 445 65.6
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 3.3e-156 556.6 441 66.9
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 9.7e-156 555.1 720 45.7
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 2.2e-155 553.9 899 40.0
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 1.7e-152 544.3 663 49.8
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 5.2e-133 479.6 467 59.3
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 4.4e-108 396.7 667 42.4
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 1.2e-92 345.5 429 51.0
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 3.3e-79 300.8 214 75.7
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 1.3e-75 288.9 207 72.9
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 6.0e-73 280.0 297 57.2
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 7.9e-73 279.6 197 73.6
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 1.3e-72 278.9 197 73.6
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 1.3e-72 278.9 197 73.6
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 3.3e-71 274.2 211 69.7
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 7.1e-66 256.5 238 59.2
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 2.1e-65 255.0 830 28.7
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 1.3e-62 245.7 324 48.5
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 3.4e-52 211.1 121 81.8
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 1.0e-51 209.5 282 44.3
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 9.7e-47 193.0 131 78.6
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 3.6e-41 174.5 151 64.9
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 3.0e-40 171.4 87 87.4
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 3.0e-40 171.4 87 87.4
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.0e-39 168.7 220 47.3
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 2.6e-39 168.3 92 83.7
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.8e-30 137.5 128 60.9
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 5.0e-27 127.5 142 47.9
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 1.5e-26 125.9 89 66.3
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 8.0e-25 120.2 430 28.1
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 5.7e-23 114.0 75 81.3
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 3.7e-22 111.3 74 71.6
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 4.1e-21 107.8 71 71.8
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.4e-21 107.5 136 50.0
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 4.5e-20 104.4 57 98.2
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 1.3e-19 102.8 54 92.6
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.9e-19 101.7 107 51.4
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.5e-18 97.4 113 46.9
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 6.8e-16 90.5 114 48.2
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 2.0e-15 89.0 59 69.5
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.8e-13 82.4 89 52.8
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 2.7e-12 78.6 52 82.7
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 5.0e-11 74.3 52 80.8
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 2.5e-10 72.0 51 76.5
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 1.6e-09 69.3 65 63.1
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 6.1e-09 67.4 84 50.0
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 1.4e-08 66.2 105 41.9
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 1.5e-07 62.8 76 51.3
BcaC04g23826 Brassica carinata HOM05D003991 ORTHO05D004883 5.8e-07 60.8 81 45.7


User provided reference genes

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