Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 9.9e-200 699.9 350 100.0
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 1.8e-196 689.1 350 97.1
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 7.9e-165 583.9 360 78.3
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 1.7e-154 549.7 365 70.1
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 6.3e-154 547.7 365 70.7
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 4.5e-152 541.6 365 69.6
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 4.5e-152 541.6 365 70.4
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 5.5e-150 534.6 351 75.8
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 9.7e-147 523.9 370 70.5
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 2.8e-146 522.3 359 70.8
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 3.1e-145 518.8 373 67.6
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 1.2e-144 516.9 359 70.5
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 5.9e-144 514.6 367 68.4
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 1.3e-143 513.5 370 68.1
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 1.7e-143 513.1 365 68.5
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 3.8e-143 511.9 364 69.0
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 8.5e-143 510.8 365 68.8
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 3.2e-142 508.8 364 67.9
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 6.1e-141 504.6 368 66.6
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 1.0e-140 503.8 361 70.4
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 1.8e-140 503.1 368 66.6
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 2.6e-139 499.2 370 66.5
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 3.4e-139 498.8 372 64.5
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 3.4e-139 498.8 361 68.7
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 7.5e-139 497.7 370 67.0
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 7.5e-139 497.7 368 67.4
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 6.3e-138 494.6 364 65.7
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.4e-137 493.4 363 68.3
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 1.4e-137 493.4 372 67.2
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 2.4e-137 492.7 368 65.8
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 3.1e-137 492.3 363 68.0
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 5.4e-137 491.5 369 64.2
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 7.0e-137 491.1 363 67.8
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 7.0e-137 491.1 371 66.6
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 7.0e-137 491.1 369 66.4
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 9.1e-137 490.7 363 68.0
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 9.1e-137 490.7 363 68.0
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 3.5e-136 488.8 369 65.3
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 1.7e-135 486.5 375 66.4
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 8.6e-135 484.2 363 65.3
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 9.5e-134 480.7 373 62.7
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.6e-133 479.9 373 62.5
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.8e-133 479.2 363 66.7
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 1.0e-132 477.2 356 66.3
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 5.2e-132 474.9 377 63.7
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 6.8e-132 474.6 364 64.8
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.2e-131 473.8 373 61.9
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 3.4e-131 472.2 370 61.6
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 4.4e-131 471.9 377 61.8
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 1.3e-130 470.3 370 61.4
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 3.7e-130 468.8 371 63.1
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 4.9e-130 468.4 373 62.5
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 8.3e-130 467.6 371 62.5
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 2.0e-128 463.0 362 61.6
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 1.0e-127 460.7 383 60.8
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 1.3e-127 460.3 350 66.3
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 1.7e-127 459.9 371 62.5
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 1.5e-126 456.8 371 62.3
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 4.3e-126 455.3 372 61.6
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 5.6e-126 454.9 371 60.4
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 5.6e-126 454.9 372 61.8
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.6e-125 453.4 372 61.6
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 8.9e-124 447.6 374 60.2
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 3.4e-123 445.7 366 63.4
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 5.8e-123 444.9 360 61.4
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 5.8e-123 444.9 351 66.1
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 7.5e-123 444.5 372 60.8
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 7.5e-123 444.5 374 59.6
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 9.8e-123 444.1 367 60.8
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 9.8e-123 444.1 367 60.8
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 9.8e-123 444.1 374 59.9
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 1.3e-122 443.7 367 60.8
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 1.7e-122 443.4 366 62.3
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 2.9e-122 442.6 373 60.6
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 3.7e-122 442.2 368 62.2
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 3.7e-122 442.2 372 60.8
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 6.4e-122 441.4 368 60.1
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.4e-121 440.3 373 59.8
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 2.7e-120 436.0 371 59.0
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 7.8e-120 434.5 366 61.5
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 1.3e-119 433.7 362 60.5
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 3.9e-119 432.2 350 61.7
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 8.6e-119 431.0 366 60.4
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 1.1e-118 430.6 361 61.5
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 1.1e-118 430.6 361 61.2
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 2.5e-118 429.5 361 60.9
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 6.2e-117 424.9 374 57.8
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 1.4e-116 423.7 374 58.0
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 1.4e-116 423.7 368 59.2
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 6.8e-116 421.4 361 60.4
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 6.8e-116 421.4 381 56.7
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 4.4e-115 418.7 366 58.5
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.3e-114 417.2 362 57.5
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 3.7e-114 415.6 352 60.2
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 4.9e-114 415.2 365 58.4
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.2e-112 410.6 372 55.4
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 1.7e-111 406.8 359 57.7
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.3e-110 402.1 359 55.4
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 1.2e-109 400.6 353 55.8
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 1.6e-109 400.2 344 57.8
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 2.3e-108 396.4 380 53.7
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.4e-107 392.1 353 56.7
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 3.4e-99 365.9 458 45.9
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 8.4e-98 361.3 336 56.0
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 8.4e-98 361.3 336 56.0
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 2.3e-95 353.2 366 50.8
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 1.1e-92 344.4 368 50.5
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 9.9e-91 337.8 365 50.1
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 8.1e-85 318.2 360 45.8
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 3.1e-84 316.2 290 53.1
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 3.1e-84 316.2 286 55.9
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 3.2e-81 306.2 375 45.9
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 7.9e-80 301.6 352 47.2
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 6.2e-77 292.0 327 47.1
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 1.8e-71 273.9 338 44.4
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 4.2e-65 252.7 376 40.4
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 7.1e-65 251.9 361 40.2
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 1.3e-63 247.7 199 61.3
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 6.9e-60 235.3 229 57.6
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 8.5e-58 228.4 182 58.2
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 1.7e-53 214.2 201 49.3
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 2.2e-50 203.8 275 39.6
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 4.7e-48 196.1 173 57.8
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 2.3e-47 193.7 304 38.5
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 3.8e-42 176.4 163 52.1
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 2.1e-40 170.6 131 61.8
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.7e-40 170.2 131 61.8
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 3.0e-39 166.8 164 50.0
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 2.4e-36 157.1 283 31.1
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 4.5e-35 152.9 131 58.8
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 3.4e-30 136.7 222 41.9
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 2.4e-28 130.6 105 60.0
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 9.1e-28 128.6 92 62.0
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 1.2e-27 128.3 112 56.2
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 4.5e-27 126.3 92 60.9
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.0e-26 122.9 92 58.7
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.0e-26 122.9 92 58.7
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.1e-24 117.5 97 57.7
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 3.6e-24 116.7 286 28.3
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 2.4e-20 104.0 85 67.1
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.8e-16 90.5 65 64.6
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.8e-16 90.5 65 64.6
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 1.8e-15 87.8 70 54.3
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 4.9e-13 79.7 45 86.7
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 6.3e-13 79.3 58 70.7
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.4e-12 77.4 77 53.2
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 7.0e-12 75.9 103 49.5
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.6e-11 74.7 65 56.9
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 3.5e-11 73.6 59 59.3
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 1.5e-09 68.2 76 50.0


User provided reference genes

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