Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 0.0e+00 1257.7 643 100.0
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 1.6e-304 1048.9 632 87.2
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 9.1e-300 1033.1 665 80.0
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 7.2e-289 996.9 643 79.0
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 1.4e-279 966.1 645 76.6
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 4.1e-276 954.5 671 73.5
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 1.6e-275 952.6 669 72.9
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 4.2e-273 944.5 670 72.2
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 4.0e-271 937.9 670 72.2
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 5.2e-271 937.6 669 71.4
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 3.4e-270 934.9 672 72.0
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 2.2e-269 932.2 653 71.8
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 4.1e-268 927.9 648 72.7
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 7.3e-265 917.1 671 71.2
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 9.5e-265 916.8 700 68.1
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 1.6e-264 916.0 662 70.5
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 2.3e-263 912.1 671 70.6
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 5.2e-263 911.0 671 71.1
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 1.2e-262 909.8 662 70.7
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 5.8e-262 907.5 664 69.6
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 2.2e-261 905.6 671 69.7
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 2.2e-261 905.6 669 69.7
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 4.9e-261 904.4 661 70.7
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 2.4e-260 902.1 669 68.9
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 3.2e-260 901.7 670 68.8
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 6.0e-259 897.5 660 68.9
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 8.6e-258 893.6 673 69.7
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 1.1e-257 893.3 670 68.1
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 3.3e-257 891.7 649 69.5
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 7.3e-257 890.6 650 69.5
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 1.6e-256 889.4 664 68.4
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 1.8e-255 885.9 667 67.3
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 2.3e-255 885.6 671 67.7
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 6.8e-255 884.0 671 67.4
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 1.1e-252 876.7 661 68.5
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 1.2e-251 873.2 669 68.6
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 4.6e-251 871.3 666 66.5
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 1.3e-250 869.8 666 66.5
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 3.9e-250 868.2 664 66.9
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 8.6e-250 867.1 670 66.4
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 3.3e-249 865.1 651 68.8
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 6.2e-248 860.9 673 65.8
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 1.1e-247 860.1 674 65.6
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 6.8e-247 857.4 693 64.9
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 1.4e-244 849.7 662 66.2
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 2.4e-244 849.0 687 64.8
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 3.2e-244 848.6 670 65.5
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 5.4e-244 847.8 660 66.5
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 1.2e-243 846.7 643 67.2
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 1.6e-243 846.3 660 66.5
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.6e-240 836.3 571 73.6
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 2.1e-240 835.9 736 60.9
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.4e-239 833.2 647 65.7
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 2.4e-239 832.4 669 62.5
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 2.4e-239 832.4 696 62.2
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 2.6e-238 828.9 669 62.5
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 3.4e-238 828.6 670 64.8
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 7.1e-236 820.8 665 65.6
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 1.6e-235 819.7 665 63.0
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 6.0e-235 817.8 569 73.1
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 2.5e-233 812.4 723 59.5
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 5.6e-233 811.2 674 61.4
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 5.6e-233 811.2 643 65.9
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 1.6e-232 809.7 669 62.8
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 1.4e-231 806.6 663 62.1
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 2.4e-231 805.8 665 62.1
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 2.4e-231 805.8 663 61.2
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 2.0e-230 802.7 666 62.3
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 4.4e-230 801.6 663 61.8
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 1.3e-229 800.0 721 60.9
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 1.9e-228 796.2 674 60.4
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 4.6e-227 791.6 675 59.9
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 4.6e-227 791.6 725 57.1
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 8.7e-226 787.3 697 58.2
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 1.3e-224 783.5 661 60.1
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 1.3e-224 783.5 671 60.4
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 2.8e-224 782.3 546 71.6
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 2.8e-224 782.3 634 61.8
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 3.4e-222 775.4 661 61.7
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 9.9e-222 773.9 671 61.8
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 1.1e-220 770.4 583 66.2
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 2.4e-220 769.2 744 54.7
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.3e-218 763.5 660 62.0
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 8.7e-218 760.8 655 61.7
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 3.4e-214 748.8 708 57.8
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 3.5e-211 738.8 638 60.0
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 2.1e-208 729.6 666 56.6
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 3.7e-208 728.8 572 66.1
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 5.8e-206 721.5 630 60.5
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 7.6e-206 721.1 666 57.7
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 2.9e-205 719.2 650 57.8
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 3.2e-204 715.7 697 54.8
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 8.7e-202 707.6 645 57.7
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 5.5e-196 688.3 666 54.4
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 9.4e-196 687.6 514 70.2
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 6.9e-191 671.4 662 55.3
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.4e-186 657.1 624 56.7
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 2.6e-177 626.3 491 64.6
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 3.7e-176 622.5 595 55.3
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 1.3e-160 570.9 651 48.4
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 1.7e-157 560.5 684 46.1
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 9.2e-143 511.5 352 72.2
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 3.6e-131 473.0 675 42.1
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 4.4e-129 466.1 309 77.3
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 2.8e-115 420.2 574 44.1
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 7.9e-94 349.0 619 39.9
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 9.6e-92 342.0 340 54.1
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 2.6e-81 307.4 307 53.4
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 3.0e-77 293.9 239 61.9
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 2.6e-73 280.8 645 33.0
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 6.7e-69 266.2 327 47.4
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 2.0e-41 174.9 173 52.6
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 3.5e-41 174.1 324 34.9
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 2.3e-40 171.4 732 26.6
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 3.2e-34 151.0 115 67.0
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 7.8e-33 146.4 314 33.1
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 4.1e-26 124.0 115 58.3
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 1.3e-24 119.0 102 59.8
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 2.3e-24 118.2 194 39.7
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 3.4e-20 104.4 89 59.6
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 4.1e-18 97.4 73 60.3
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 2.1e-17 95.1 127 45.7
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 4.3e-15 87.4 67 56.7
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 8.1e-14 83.2 50 76.0
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.4e-13 82.4 50 76.0
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 2.3e-13 81.6 62 56.5
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 2.3e-13 81.6 62 56.5
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 3.1e-13 81.3 53 60.4
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 4.0e-13 80.9 50 74.0
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.6e-12 78.2 50 74.0
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.7e-11 75.5 67 53.7
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 1.1e-10 72.8 42 83.3
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 3.2e-10 71.2 42 73.8
QL02p059474 Quercus lobata HOM05D002544 ORTHO05D007856 4.1e-10 70.9 38 84.2
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 1.2e-09 69.3 42 71.4


User provided reference genes

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