Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 1.5e-85 319.3 145 100.0
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 8.6e-81 303.5 145 95.2
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.6e-79 299.3 145 93.8
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 5.2e-78 294.3 145 91.7
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 7.0e-75 283.9 145 88.3
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.2e-74 283.1 145 88.3
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 1.3e-73 279.6 137 91.2
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 3.1e-70 268.5 137 88.3
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 6.4e-68 260.8 141 80.9
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.1e-67 260.0 133 85.0
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 2.4e-67 258.8 135 81.5
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 1.6e-66 256.1 136 80.9
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 2.0e-66 255.8 136 80.9
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 3.5e-66 255.0 137 81.0
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 1.0e-65 253.4 136 80.9
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 2.3e-65 252.3 135 80.0
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 3.0e-65 251.9 135 80.7
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 5.0e-65 251.1 141 78.0
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 8.6e-65 250.4 133 81.2
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 1.1e-64 250.0 145 75.9
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 1.5e-64 249.6 133 79.7
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 1.5e-64 249.6 141 77.3
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 1.5e-64 249.6 141 77.3
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 1.5e-64 249.6 135 80.7
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 4.3e-64 248.1 133 82.0
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 1.2e-63 246.5 130 78.5
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 1.6e-63 246.1 139 80.6
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 1.6e-63 246.1 134 79.9
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 1.6e-63 246.1 136 77.2
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 1.6e-63 246.1 141 76.6
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 1.6e-63 246.1 137 78.1
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 1.6e-63 246.1 136 77.9
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 2.1e-63 245.7 136 77.9
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 2.1e-63 245.7 145 77.2
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 2.8e-63 245.4 137 76.6
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 3.6e-63 245.0 137 75.9
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 4.7e-63 244.6 134 76.1
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 4.7e-63 244.6 137 77.4
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 6.2e-63 244.2 135 78.5
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 6.2e-63 244.2 137 75.9
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 6.2e-63 244.2 136 75.7
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 6.2e-63 244.2 133 81.2
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 8.1e-63 243.8 135 77.8
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 8.1e-63 243.8 135 77.8
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 8.1e-63 243.8 135 78.5
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 1.4e-62 243.0 133 78.9
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 1.4e-62 243.0 133 78.2
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 1.4e-62 243.0 137 75.2
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 1.4e-62 243.0 136 77.2
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 2.3e-62 242.3 135 76.3
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.3e-62 242.3 137 75.2
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 3.1e-62 241.9 136 74.3
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 4.0e-62 241.5 137 76.6
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 5.2e-62 241.1 133 77.4
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 1.2e-61 240.0 136 75.0
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 2.0e-61 239.2 127 81.1
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 2.0e-61 239.2 141 74.5
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.6e-61 238.8 135 73.3
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 3.4e-61 238.4 136 74.3
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 3.4e-61 238.4 133 78.9
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 3.4e-61 238.4 133 74.4
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 4.4e-61 238.0 127 80.3
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 5.8e-61 237.7 135 75.6
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 7.5e-61 237.3 135 77.0
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.3e-60 236.5 137 73.7
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 1.3e-60 236.5 133 76.7
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 2.2e-60 235.7 141 73.0
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 3.7e-60 235.0 141 72.3
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 4.9e-60 234.6 135 73.3
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 8.3e-60 233.8 136 73.5
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 1.1e-59 233.4 136 75.7
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 1.1e-59 233.4 137 73.0
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.9e-59 232.6 137 71.5
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.9e-59 232.6 129 77.5
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 2.4e-59 232.3 132 75.0
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.2e-59 231.9 137 72.3
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 9.2e-59 230.3 135 71.1
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 1.2e-58 229.9 133 72.9
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 2.1e-58 229.2 133 74.4
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.1e-58 229.2 136 72.1
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 2.7e-58 228.8 134 73.1
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 2.7e-58 228.8 133 72.9
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 2.7e-58 228.8 133 72.9
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.6e-58 228.0 137 70.1
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.6e-58 228.0 137 70.1
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 6.0e-58 227.6 136 72.8
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 7.8e-58 227.3 133 73.7
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 7.8e-58 227.3 131 74.0
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 1.0e-57 226.9 134 72.4
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 1.3e-57 226.5 133 71.4
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 1.3e-57 226.5 135 73.3
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 2.3e-57 225.7 133 73.7
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 3.0e-57 225.3 133 72.2
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 3.0e-57 225.3 133 70.7
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 3.0e-57 225.3 131 74.0
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 6.6e-57 224.2 133 73.7
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 6.6e-57 224.2 126 76.2
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 6.6e-57 224.2 132 73.5
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 8.6e-57 223.8 133 71.4
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 1.1e-56 223.4 134 71.6
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 2.5e-56 222.2 135 71.1
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 2.5e-56 222.2 128 74.2
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 4.3e-56 221.5 121 80.2
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 5.6e-56 221.1 131 74.0
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 1.2e-55 219.9 133 69.9
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.2e-55 219.9 119 82.4
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 8.1e-55 217.2 121 75.2
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 6.8e-54 214.2 180 58.3
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 1.2e-53 213.4 125 71.2
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 2.0e-53 212.6 136 65.4
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 2.2e-52 209.1 125 68.8
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 2.9e-52 208.8 121 73.6
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 4.9e-52 208.0 120 70.8
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 6.4e-52 207.6 132 65.9
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.4e-51 206.5 126 72.2
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 1.9e-51 206.1 134 64.9
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.9e-51 206.1 132 64.4
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 2.4e-51 205.7 121 74.4
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.2e-51 205.3 132 64.4
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 7.1e-51 204.1 130 69.2
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 3.5e-50 201.8 143 60.8
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 5.1e-49 198.0 128 67.2
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.1e-48 196.8 135 61.5
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.6e-47 193.0 137 59.9
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 1.6e-47 193.0 133 66.2
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 8.1e-47 190.7 130 64.6
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 1.8e-46 189.5 130 65.4
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.5e-45 186.4 137 62.0
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.7e-44 183.0 132 61.4
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 2.2e-44 182.6 129 60.5
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 8.4e-44 180.6 106 72.6
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 1.4e-43 179.9 137 63.5
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 2.4e-43 179.1 99 78.8
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 2.7e-42 175.6 100 75.0
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.3e-41 173.3 132 59.8
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.3e-41 172.6 132 59.1
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 2.8e-39 165.6 128 59.4
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 4.8e-39 164.9 107 72.9
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.4e-38 163.3 125 60.0
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 1.8e-38 162.9 98 73.5
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 9.0e-38 160.6 132 58.3
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.0e-33 147.1 86 73.3
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 3.3e-32 142.1 82 76.8
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 3.3e-32 142.1 145 46.2
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 9.9e-29 130.6 73 80.8
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 8.4e-28 127.5 72 73.6
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.3e-25 119.4 112 51.8
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.4e-22 109.4 78 60.3
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.4e-22 109.4 63 73.0
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 9.3e-19 97.4 79 55.7


User provided reference genes

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