Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 1.4e-279 965.7 520 100.0
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 4.5e-233 811.2 459 96.5
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 2.2e-179 632.9 449 80.8
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 7.4e-167 591.3 474 74.5
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 3.0e-160 569.3 461 73.5
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 8.7e-160 567.8 463 72.6
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 8.7e-160 567.8 471 70.9
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 6.9e-157 558.1 460 73.5
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 2.6e-156 556.2 460 72.8
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 1.0e-155 554.3 460 72.6
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 3.2e-154 549.3 461 71.6
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 7.2e-154 548.1 472 70.6
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 1.2e-153 547.4 461 71.8
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 2.7e-153 546.2 462 71.0
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 1.5e-151 540.4 461 72.7
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 3.3e-151 539.3 462 70.8
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 3.7e-150 535.8 460 69.8
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 3.4e-148 529.3 454 70.0
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 1.3e-147 527.3 458 69.4
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.7e-147 526.9 458 68.8
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 2.2e-147 526.6 458 68.8
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 2.9e-147 526.2 461 70.9
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 2.9e-147 526.2 458 68.6
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.1e-146 524.2 458 68.1
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 5.1e-144 515.4 455 68.1
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 3.3e-143 512.7 460 69.1
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 1.7e-142 510.4 463 68.0
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 8.2e-142 508.1 385 76.9
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 2.4e-141 506.5 460 68.7
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 3.5e-140 502.7 460 68.5
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 3.5e-140 502.7 495 60.8
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 7.7e-140 501.5 465 66.0
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 1.7e-139 500.4 454 67.4
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 9.4e-138 494.6 458 64.8
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 1.4e-136 490.7 428 68.9
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 1.1e-135 487.6 459 65.6
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 4.4e-135 485.7 458 63.8
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 4.4e-135 485.7 459 65.1
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 2.2e-134 483.4 429 67.6
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 4.8e-134 482.3 457 65.6
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 4.8e-134 482.3 430 69.5
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 4.1e-133 479.2 413 69.2
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 9.1e-133 478.0 505 61.8
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 1.6e-132 477.2 413 69.0
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 2.6e-132 476.5 413 68.8
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 1.0e-131 474.6 430 67.4
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 2.2e-131 473.4 445 66.1
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 2.9e-131 473.0 461 65.1
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 8.5e-131 471.5 431 68.7
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 8.5e-131 471.5 459 63.8
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 1.1e-130 471.1 460 64.1
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 2.5e-130 469.9 428 67.1
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 4.2e-130 469.2 459 64.7
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 4.2e-130 469.2 421 67.7
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 6.1e-129 465.3 449 63.5
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 2.3e-128 463.4 458 64.0
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 3.0e-128 463.0 449 63.5
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 8.8e-128 461.5 462 63.2
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 1.3e-126 457.6 426 66.7
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 6.3e-126 455.3 447 64.7
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 8.3e-126 454.9 453 62.9
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 1.8e-125 453.8 343 79.0
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 1.2e-124 451.1 453 64.0
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 4.5e-124 449.1 427 63.7
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 1.5e-122 444.1 440 59.3
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 9.8e-119 431.4 433 61.4
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 1.3e-118 431.0 429 61.8
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 4.1e-117 426.0 452 62.8
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 5.9e-116 422.2 412 65.0
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 2.3e-115 420.2 445 62.5
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 6.6e-115 418.7 451 62.3
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 3.3e-114 416.4 435 62.5
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 4.3e-114 416.0 449 62.4
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 6.1e-113 412.1 409 66.5
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 2.3e-112 410.2 382 68.3
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 2.0e-111 407.1 371 70.4
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 3.4e-111 406.4 446 62.8
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 7.5e-111 405.2 384 68.5
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 3.7e-110 402.9 461 60.3
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 3.2e-109 399.8 371 69.8
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 5.4e-109 399.1 387 67.7
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 7.0e-109 398.7 383 66.6
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 7.0e-109 398.7 462 59.5
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 7.0e-109 398.7 462 59.5
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 1.2e-108 397.9 384 65.4
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 1.6e-108 397.5 446 62.1
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 1.6e-108 397.5 298 72.5
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 3.5e-108 396.4 329 72.0
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 7.8e-108 395.2 372 69.6
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 7.8e-108 395.2 460 57.4
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 8.6e-107 391.7 401 62.3
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 4.3e-106 389.4 434 62.0
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 6.2e-105 385.6 359 70.2
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 4.4e-103 379.4 411 60.3
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 1.7e-102 377.5 330 72.4
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 1.7e-102 377.5 260 79.2
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 1.9e-101 374.0 444 56.5
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 1.9e-101 374.0 379 62.8
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 3.2e-101 373.2 382 63.9
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 7.0e-101 372.1 434 58.8
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 1.3e-99 367.9 326 69.0
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 1.2e-87 328.2 261 69.0
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 6.4e-86 322.4 379 60.4
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 2.6e-79 300.4 276 69.9
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 1.7e-78 297.7 452 44.0
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 2.4e-77 293.9 203 77.8
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 7.8e-76 288.9 345 58.3
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 7.3e-74 282.3 238 76.5
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 1.3e-70 271.6 318 56.9
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 3.5e-68 263.5 228 67.1
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 1.3e-57 228.4 341 47.8
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 2.8e-57 227.3 334 50.3
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 2.6e-55 220.7 342 46.5
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 1.7e-54 218.0 310 47.7
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 9.3e-53 212.2 224 51.3
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 2.1e-52 211.1 137 83.2
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 4.1e-40 170.2 333 42.9
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 7.7e-39 166.0 123 71.5
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 6.7e-35 152.9 210 42.4
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 2.6e-31 141.0 77 96.1
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 2.0e-23 114.8 160 54.4
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 2.0e-18 98.2 60 81.7
Hund13037 Selenicereus undatus HOM05D006243 ORTHO05D007688 3.1e-16 90.9 168 39.9
FAN28G0752 Fragaria x ananassa HOM05D006243 ORTHO05D007688 5.9e-15 86.7 113 43.4
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 2.1e-12 78.2 167 36.5
unitig_736.g22595 Utricularia gibba HOM05D006243 ORTHO05D007688 1.4e-08 65.5 143 35.0


User provided reference genes

Program Settings