Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 2.2e-75 285.4 135 100.0
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 4.5e-68 261.2 160 81.9
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 1.2e-55 219.9 139 74.1
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 1.9e-45 186.0 99 82.8
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 2.4e-45 185.7 138 67.4
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 7.1e-45 184.1 139 64.0
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 9.2e-45 183.7 135 63.7
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 1.2e-44 183.3 130 66.9
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 1.6e-44 183.0 108 75.9
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 2.7e-44 182.2 128 67.2
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 4.6e-44 181.4 104 76.0
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 6.0e-44 181.0 137 65.7
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 1.0e-43 180.3 142 64.1
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 1.0e-43 180.3 97 82.5
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 1.3e-43 179.9 110 75.5
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 1.7e-43 179.5 100 83.0
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 3.9e-43 178.3 127 69.3
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 5.1e-43 177.9 94 83.0
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 5.1e-43 177.9 94 80.9
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 8.6e-43 177.2 119 69.7
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 1.1e-42 176.8 126 67.5
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.5e-42 176.4 115 72.2
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 1.5e-42 176.4 117 70.1
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 1.9e-42 176.0 122 68.0
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 2.5e-42 175.6 103 75.7
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 3.3e-42 175.3 94 83.0
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 3.3e-42 175.3 94 84.0
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 4.3e-42 174.9 122 66.4
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 5.6e-42 174.5 104 75.0
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 5.6e-42 174.5 96 80.2
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 7.3e-42 174.1 133 60.9
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 7.3e-42 174.1 93 78.5
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 7.3e-42 174.1 113 71.7
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 7.3e-42 174.1 113 71.7
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 7.3e-42 174.1 102 75.5
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 7.3e-42 174.1 136 62.5
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 9.5e-42 173.7 97 77.3
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 1.2e-41 173.3 120 66.7
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.2e-41 173.3 104 75.0
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.2e-41 173.3 104 74.0
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.2e-41 173.3 104 75.0
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 2.1e-41 172.6 113 70.8
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 2.1e-41 172.6 108 74.1
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 2.8e-41 172.2 93 80.6
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 2.8e-41 172.2 104 76.9
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 3.6e-41 171.8 93 81.7
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 4.7e-41 171.4 95 80.0
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 6.2e-41 171.0 96 77.1
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 1.1e-40 170.2 131 62.6
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 1.1e-40 170.2 131 62.6
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 1.4e-40 169.9 94 77.7
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 1.4e-40 169.9 94 77.7
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 2.3e-40 169.1 99 77.8
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 2.3e-40 169.1 94 79.8
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 3.1e-40 168.7 96 78.1
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 3.1e-40 168.7 99 77.8
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 3.1e-40 168.7 94 78.7
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 4.0e-40 168.3 94 77.7
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 5.2e-40 167.9 93 77.4
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 5.2e-40 167.9 118 67.8
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 6.8e-40 167.5 98 76.5
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 2.0e-39 166.0 137 59.9
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 2.6e-39 165.6 95 76.8
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 3.4e-39 165.2 133 60.9
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 3.4e-39 165.2 122 65.6
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 5.8e-39 164.5 119 65.5
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 1.3e-38 163.3 98 74.5
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 2.2e-38 162.5 121 66.1
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 2.9e-38 162.2 127 62.2
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 3.8e-38 161.8 94 77.7
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 6.4e-38 161.0 130 60.0
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 8.4e-38 160.6 107 70.1
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 8.4e-38 160.6 80 83.8
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 9.2e-37 157.1 130 60.8
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 1.2e-36 156.8 121 62.8
SEGI_34374 Sequoiadendron giganteum HOM05D007646 ORTHO05D004022 4.6e-36 154.8 91 71.4
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 1.0e-35 153.7 127 60.6
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 8.6e-35 150.6 72 88.9
Medtr7g082970 Medicago truncatula HOM05D007646 ORTHO05D004022 1.1e-34 150.2 212 40.6
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 1.5e-34 149.8 124 56.5
Mapoly0026s0130 Marchantia polymorpha HOM05D007646 ORTHO05D004022 1.2e-33 146.7 81 75.3
Sabra17G0101300 Salix brachista HOM05D007646 ORTHO05D004022 2.8e-33 145.6 181 43.6
Nitab4.5_0000036g0620 Nicotiana tabacum HOM05D007646 ORTHO05D004022 3.6e-33 145.2 93 69.9
Sabra17G0103900 Salix brachista HOM05D007646 ORTHO05D004022 3.6e-33 145.2 182 43.4
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 1.5e-31 139.8 81 70.4
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 1.3e-30 136.7 90 64.4
Ah.16g101400 Amaranthus hybridus HOM05D007646 ORTHO05D004022 2.9e-22 109.0 55 81.8
CsaV3_3G017630 Cucumis sativus L. HOM05D007646 ORTHO05D004022 4.9e-22 108.2 51 90.2
CSS0015077 Camellia sinensis var. sinensis HOM05D007646 ORTHO05D004022 8.4e-22 107.5 51 92.2
MBI10_g07293_MAGBIO Magnolia biondii HOM05D007646 ORTHO05D004022 1.1e-21 107.1 52 88.5
Peaxi162Scf00343g00059 Petunia axillaris HOM05D007646 ORTHO05D004022 4.2e-21 105.1 51 88.2
Nn4g24089 Nelumbo nucifera HOM05D007646 ORTHO05D004022 5.1e-19 98.2 93 57.0
MELO3C020311.2 Cucumis melo HOM05D007646 ORTHO05D004022 2.9e-14 82.4 77 50.6
Nn3g18065 Nelumbo nucifera HOM05D007646 ORTHO05D004022 1.1e-13 80.5 85 54.1
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 2.7e-12 75.9 89 41.6
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 3.5e-12 75.5 79 44.3
unitig_748.g8495 Utricularia gibba HOM05D007646 ORTHO05D004022 3.9e-11 72.0 42 73.8
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 1.9e-10 69.7 80 41.2
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 1.9e-10 69.7 122 33.6
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 2.5e-10 69.3 84 40.5
ECA246G1632 Erigeron canadensis HOM05D007646 ORTHO05D004022 2.5e-10 69.3 34 79.4
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 2.5e-10 69.3 77 42.9
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 3.3e-10 68.9 79 41.8
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 4.3e-10 68.6 80 40.0
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 5.6e-10 68.2 79 43.0
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 9.6e-10 67.4 79 40.5
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 9.6e-10 67.4 79 40.5
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 9.6e-10 67.4 79 40.5
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 9.6e-10 67.4 84 40.5
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 1.3e-09 67.0 87 37.9
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 1.3e-09 67.0 79 40.5
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 1.6e-09 66.6 82 37.8
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 1.6e-09 66.6 79 41.8
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 2.1e-09 66.2 79 40.5
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 2.1e-09 66.2 79 39.2
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 2.1e-09 66.2 80 40.0
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 2.8e-09 65.9 80 40.0
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 2.8e-09 65.9 79 39.2
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 2.8e-09 65.9 80 38.8
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 4.8e-09 65.1 79 40.5
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 4.8e-09 65.1 79 40.5
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 8.2e-09 64.3 89 39.3
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 8.2e-09 64.3 84 38.1
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 8.2e-09 64.3 79 38.0
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.1e-08 63.9 77 40.3
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 1.1e-08 63.9 79 39.2
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.1e-08 63.9 79 40.5
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.1e-08 63.9 79 40.5
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 1.4e-08 63.5 79 39.2
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 1.4e-08 63.5 79 39.2
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 1.8e-08 63.2 80 37.5
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 1.8e-08 63.2 79 38.0
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 1.8e-08 63.2 79 39.2
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 1.8e-08 63.2 79 38.0
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 2.4e-08 62.8 80 38.8
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 2.4e-08 62.8 79 38.0
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 2.4e-08 62.8 77 40.3
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 3.1e-08 62.4 80 37.5
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 3.1e-08 62.4 79 39.2
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 3.1e-08 62.4 79 39.2
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 4.0e-08 62.0 80 37.5
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 4.0e-08 62.0 84 36.9
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 4.0e-08 62.0 85 34.1
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 4.0e-08 62.0 80 37.5
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 5.3e-08 61.6 79 36.7
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 5.3e-08 61.6 92 33.7
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 5.3e-08 61.6 79 38.0
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 6.9e-08 61.2 79 38.0
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 9.0e-08 60.8 84 34.5
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 9.0e-08 60.8 79 38.0
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 1.2e-07 60.5 86 38.4
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 1.2e-07 60.5 138 31.2
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 1.5e-07 60.1 80 38.8
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 2.0e-07 59.7 79 35.4
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 2.0e-07 59.7 79 36.7
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 2.6e-07 59.3 79 35.4
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 3.4e-07 58.9 77 37.7
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 3.4e-07 58.9 79 36.7
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 4.5e-07 58.5 79 35.4
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 5.8e-07 58.2 79 35.4
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 7.6e-07 57.8 80 36.2
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 7.6e-07 57.8 83 33.7
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 7.6e-07 57.8 79 36.7
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 1.0e-06 57.4 79 36.7
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 1.0e-06 57.4 79 36.7
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 1.0e-06 57.4 79 36.7
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 1.3e-06 57.0 80 36.2
Cfa007862 Carpinus fangiana HOM05D002578 ORTHO05D002698 1.7e-06 56.6 89 39.3
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 2.2e-06 56.2 86 36.0
Haze_14208 Corylus avellana HOM05D002578 ORTHO05D002698 2.2e-06 56.2 80 42.5
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 2.2e-06 56.2 80 36.2
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 4.9e-06 55.1 79 35.4


User provided reference genes

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