Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 2.4e-110 402.1 193 100.0
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 2.4e-110 402.1 193 100.0
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 4.2e-67 258.5 193 72.0
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 7.4e-64 247.7 193 67.9
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 8.2e-63 244.2 193 67.9
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 1.0e-60 237.3 192 65.1
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 6.5e-60 234.6 193 63.7
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 5.5e-59 231.5 193 62.7
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 2.1e-58 229.6 193 61.1
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 8.0e-58 227.6 193 62.2
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 1.4e-57 226.9 193 61.1
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 2.3e-57 226.1 193 60.6
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 3.0e-57 225.7 191 61.3
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 3.0e-57 225.7 192 60.4
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 6.7e-57 224.6 193 60.6
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 6.7e-57 224.6 193 62.2
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 8.8e-57 224.2 193 60.6
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 1.5e-56 223.4 193 59.6
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 2.0e-56 223.0 193 59.6
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 2.6e-56 222.6 193 59.6
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 2.6e-56 222.6 193 59.6
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 3.3e-56 222.2 193 60.6
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 1.3e-55 220.3 193 60.1
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 2.2e-55 219.5 193 57.5
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 2.8e-55 219.2 193 59.1
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 2.8e-55 219.2 193 60.1
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 2.8e-55 219.2 193 60.1
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 3.7e-55 218.8 193 59.6
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 4.8e-55 218.4 192 59.9
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 6.3e-55 218.0 193 60.6
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.8e-54 216.5 193 58.5
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 2.4e-54 216.1 193 57.0
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 2.4e-54 216.1 193 56.5
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 7.0e-54 214.5 193 57.0
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 9.1e-54 214.2 192 58.9
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 9.1e-54 214.2 193 58.5
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 1.6e-53 213.4 193 58.5
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 1.6e-53 213.4 193 56.5
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.0e-53 213.0 193 57.5
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 2.0e-53 213.0 193 57.0
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 2.6e-53 212.6 196 59.2
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 2.6e-53 212.6 193 58.5
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 4.5e-53 211.8 193 56.5
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 5.9e-53 211.5 193 58.0
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 7.7e-53 211.1 193 58.0
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 1.0e-52 210.7 192 57.3
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.3e-52 210.3 193 57.0
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.3e-52 210.3 193 57.0
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 1.3e-52 210.3 194 58.2
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 1.7e-52 209.9 190 57.4
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 2.2e-52 209.5 193 54.9
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 2.2e-52 209.5 192 57.8
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 2.9e-52 209.1 193 57.5
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 5.0e-52 208.4 193 56.0
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 6.5e-52 208.0 192 56.8
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 6.5e-52 208.0 193 54.9
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.1e-51 207.2 189 57.7
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 1.1e-51 207.2 192 56.8
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.5e-51 206.8 189 57.7
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 1.5e-51 206.8 193 53.9
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 1.9e-51 206.5 193 54.4
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 1.9e-51 206.5 193 53.9
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 2.5e-51 206.1 193 54.4
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 2.5e-51 206.1 193 56.0
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 5.5e-51 204.9 193 53.9
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 5.5e-51 204.9 193 55.4
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 1.2e-50 203.8 193 54.9
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 1.2e-50 203.8 193 54.9
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 1.2e-50 203.8 193 53.9
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 1.2e-50 203.8 193 53.9
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 1.2e-50 203.8 193 53.9
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 1.2e-50 203.8 193 53.9
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 1.2e-50 203.8 193 53.9
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 1.2e-50 203.8 193 53.9
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 1.2e-50 203.8 193 53.9
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.2e-50 203.8 193 52.8
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.2e-50 203.8 193 56.0
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 2.7e-50 202.6 193 53.4
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 2.7e-50 202.6 193 53.9
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 2.7e-50 202.6 193 53.4
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 3.6e-50 202.2 193 54.4
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 3.6e-50 202.2 193 54.4
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 3.6e-50 202.2 193 54.4
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 4.7e-50 201.8 193 53.9
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 6.1e-50 201.4 193 53.4
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 8.0e-50 201.1 192 56.8
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.0e-49 200.7 189 57.1
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 1.0e-49 200.7 214 52.8
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 1.8e-49 199.9 193 53.9
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 1.8e-49 199.9 193 53.9
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.8e-49 199.9 192 54.7
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.8e-49 199.9 192 54.7
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 1.8e-49 199.9 193 54.9
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.8e-49 199.9 193 53.9
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 2.3e-49 199.5 192 54.7
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 4.0e-49 198.7 192 54.7
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 5.2e-49 198.4 191 53.4
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 1.2e-48 197.2 190 55.3
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.2e-48 197.2 191 53.4
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.2e-48 197.2 189 55.6
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.2e-48 197.2 221 50.2
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 2.0e-48 196.4 193 55.4
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.0e-48 196.4 191 53.4
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 1.7e-47 193.4 187 53.5
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 1.7e-47 193.4 191 53.9
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 2.8e-47 192.6 186 55.4
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 4.8e-47 191.8 191 51.8
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 6.3e-47 191.4 191 53.4
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 8.3e-47 191.0 192 53.6
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 1.1e-46 190.7 193 52.8
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 1.1e-46 190.7 192 53.6
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 1.8e-46 189.9 191 53.4
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 4.1e-46 188.7 191 53.4
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 7.0e-46 188.0 193 51.8
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 9.1e-46 187.6 193 50.3
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 9.1e-46 187.6 191 53.9
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 1.6e-45 186.8 192 52.1
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 2.7e-45 186.0 189 51.9
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 2.7e-45 186.0 189 51.9
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 3.5e-45 185.7 193 51.3
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 1.0e-44 184.1 188 51.6
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.3e-44 183.7 193 49.2
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 1.7e-44 183.3 242 43.0
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 1.7e-44 183.3 194 50.5
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 1.7e-44 183.3 193 50.8
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 3.8e-44 182.2 193 48.7
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 3.8e-44 182.2 191 50.3
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 6.5e-44 181.4 193 51.8
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 1.1e-43 180.6 190 50.0
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 4.2e-43 178.7 168 57.7
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 7.2e-43 177.9 193 53.4
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 7.2e-43 177.9 193 50.3
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 3.6e-42 175.6 303 41.6
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 6.1e-42 174.9 183 51.4
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.4e-41 173.7 186 48.9
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 1.4e-41 173.7 183 50.8
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.3e-41 172.9 226 45.1
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 2.6e-40 169.5 194 51.0
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 2.6e-40 169.5 193 48.2
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 9.8e-40 167.5 191 50.3
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 1.7e-39 166.8 193 48.2
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 6.3e-39 164.9 189 49.2
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 1.9e-35 153.3 192 46.4
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 5.5e-35 151.8 159 52.8
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 2.8e-34 149.4 189 45.0
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.4e-32 142.5 192 42.7
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 7.5e-32 141.4 177 45.8
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.2e-29 134.0 187 40.6
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 2.0e-29 133.3 191 38.7
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.7e-29 132.9 180 41.7
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.5e-29 132.5 180 41.7
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 4.6e-29 132.1 187 40.1
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 7.3e-27 124.8 66 84.8
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 3.6e-26 122.5 193 36.8
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 9.8e-24 114.4 176 38.1
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 3.7e-23 112.5 90 60.0
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 6.4e-23 111.7 90 60.0
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 1.1e-22 110.9 66 74.2
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 6.6e-20 101.7 64 68.8
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 6.6e-20 101.7 177 35.0
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 8.6e-20 101.3 86 59.3
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 3.7e-15 85.9 99 43.4
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 3.7e-15 85.9 166 35.5
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 3.7e-15 85.9 90 50.0
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.1e-14 84.3 160 35.0
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.1e-14 84.3 160 35.0
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.1e-14 84.3 160 35.0
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 9.2e-14 81.3 82 53.7
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 1.0e-12 77.8 82 51.2
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 3.0e-12 76.3 42 78.6
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 6.6e-12 75.1 96 44.8
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 6.6e-12 75.1 96 44.8
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 1.1e-11 74.3 163 33.7
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 1.1e-11 74.3 168 31.5
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 1.1e-11 74.3 40 75.0
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.5e-11 73.9 40 80.0
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 1.5e-11 73.9 42 78.6
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 1.1e-09 67.8 166 33.1
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 1.1e-09 67.8 172 31.4
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 7.6e-08 61.6 34 73.5
Gorai.003G095200 Gossypium raimondii HOM05D003749 ORTHO05D004421 9.9e-08 61.2 34 73.5
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 1.7e-07 60.5 34 70.6
Gohir.D08G113616 Gossypium hirsutum HOM05D003749 ORTHO05D004421 2.9e-07 59.7 36 69.4
CARHR257530 Cardamine hirsuta HOM05D000389 ORTHO05D012814 4.9e-07 58.9 41 61.0
BcaC06g35350 Brassica carinata HOM05D000085 ORTHO05D003318 2.4e-06 56.6 33 75.8
Zm00001eb413440 Zea mays HOM05D000646 ORTHO05D000607 2.4e-06 56.6 33 72.7
Zm00001eb371620 Zea mays HOM05D000283 ORTHO05D000358 7.1e-06 55.1 32 75.0


User provided reference genes

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