Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 7.3e-295 1016.5 534 100.0
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 9.0e-269 929.9 536 93.7
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 1.7e-246 855.9 535 85.4
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 1.1e-229 800.0 545 80.6
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 8.8e-224 780.4 514 81.5
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 1.2e-223 780.0 544 77.0
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 7.5e-223 777.3 540 77.8
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 1.7e-222 776.2 516 80.8
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 2.8e-222 775.4 518 80.1
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 2.8e-222 775.4 515 79.6
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 6.3e-222 774.2 548 76.5
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 6.3e-222 774.2 534 78.1
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 6.3e-222 774.2 512 79.7
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 1.4e-221 773.1 543 78.1
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 1.8e-221 772.7 506 81.2
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 4.1e-221 771.5 510 80.2
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 5.3e-221 771.2 512 80.7
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 7.0e-221 770.8 531 76.8
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 3.5e-220 768.5 533 77.7
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 5.9e-220 767.7 525 77.5
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 7.7e-220 767.3 509 80.0
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 1.0e-219 766.9 515 79.2
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 6.5e-219 764.2 534 76.8
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 1.5e-218 763.1 513 78.9
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 1.9e-218 762.7 533 77.1
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 3.2e-218 761.9 534 76.6
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 5.5e-218 761.1 534 76.4
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 7.2e-218 760.8 509 80.2
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 1.6e-217 759.6 532 75.8
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 2.3e-216 755.7 533 75.8
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 1.2e-215 753.4 509 78.6
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 1.2e-215 753.4 533 75.4
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 9.8e-215 750.4 537 75.2
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 1.3e-214 750.0 535 76.6
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 6.3e-214 747.7 509 78.4
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 7.0e-213 744.2 515 76.9
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 7.0e-213 744.2 535 75.5
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 9.1e-213 743.8 515 77.1
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 4.5e-212 741.5 539 75.3
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 2.3e-211 739.2 509 77.4
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 2.3e-211 739.2 527 75.5
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 8.6e-211 737.3 500 77.4
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 2.5e-210 735.7 543 73.5
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 3.3e-210 735.3 511 77.7
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 1.6e-209 733.0 533 73.5
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 1.6e-209 733.0 542 74.2
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 1.0e-208 730.3 507 77.3
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 1.0e-208 730.3 527 72.7
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 8.9e-208 727.2 529 72.4
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 2.6e-207 725.7 548 72.4
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 9.8e-207 723.8 509 75.2
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 3.7e-206 721.8 511 74.8
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 1.1e-205 720.3 533 73.9
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 5.4e-205 718.0 514 73.5
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 2.0e-204 716.1 540 72.8
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 5.9e-204 714.5 540 72.6
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 1.0e-203 713.8 514 73.2
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 1.0e-203 713.8 531 73.3
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 1.0e-203 713.8 543 71.3
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 1.0e-203 713.8 540 72.6
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 2.3e-203 712.6 507 75.5
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 8.6e-203 710.7 516 74.2
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.1e-202 710.3 541 72.3
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 4.3e-202 708.4 523 73.8
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 4.3e-202 708.4 545 71.2
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 7.3e-202 707.6 545 71.2
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 1.2e-201 706.8 535 72.5
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 1.4e-200 703.4 537 71.9
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 3.0e-200 702.2 507 74.0
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 2.0e-199 699.5 536 70.7
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 2.6e-199 699.1 616 64.6
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 3.4e-199 698.7 537 71.7
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 7.5e-199 697.6 534 71.7
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 7.5e-199 697.6 505 74.9
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 3.7e-198 695.3 510 73.1
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 4.1e-197 691.8 565 68.5
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 3.5e-196 688.7 534 71.2
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 7.8e-196 687.6 537 70.0
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 5.6e-194 681.4 523 71.5
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 7.3e-194 681.0 507 73.0
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 2.1e-193 679.5 539 70.1
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 7.5e-191 671.0 640 61.6
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 1.2e-188 663.7 522 69.5
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 1.6e-188 663.3 533 68.5
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 1.9e-186 656.4 459 77.6
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 1.6e-185 653.3 501 71.1
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 8.3e-182 641.0 461 75.1
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 5.2e-176 621.7 630 59.0
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 5.2e-176 621.7 520 64.4
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 4.4e-175 618.6 507 65.7
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 4.1e-173 612.1 537 62.2
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 1.2e-172 610.5 578 60.7
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 1.8e-168 596.7 434 74.9
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 3.6e-161 572.4 531 59.5
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 3.6e-161 572.4 531 59.5
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 2.1e-153 546.6 483 62.7
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 1.4e-152 543.9 472 64.8
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 2.6e-151 539.7 365 79.7
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 3.2e-149 532.7 502 57.6
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 1.0e-142 511.1 541 52.3
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 3.9e-139 499.2 409 68.5
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 6.7e-139 498.4 364 72.5
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 9.7e-138 494.6 366 72.4
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 2.2e-134 483.4 352 73.3
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 8.8e-123 444.9 320 75.3
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 2.2e-105 387.1 440 56.4
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 1.4e-99 367.9 249 77.1
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 1.8e-99 367.5 515 43.9
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 5.2e-99 365.9 249 76.7
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 6.6e-94 349.0 532 42.9
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 5.2e-83 312.8 240 71.2
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 3.0e-78 297.0 494 38.9
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 3.5e-71 273.5 312 54.5
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 4.6e-63 246.5 152 80.9
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 1.3e-49 201.8 113 88.5
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 7.8e-47 192.6 506 34.2
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 2.2e-41 174.5 501 33.1
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 4.2e-40 170.2 482 33.8
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 1.0e-38 165.6 152 61.2
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 1.7e-33 148.3 122 68.9
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 1.4e-32 145.2 288 39.9
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 4.8e-28 130.2 510 31.6
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 1.1e-27 129.0 86 68.6
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 9.0e-27 125.9 454 30.8
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 3.8e-25 120.6 497 30.4
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 2.2e-20 104.8 59 81.4
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 6.3e-20 103.2 271 32.1
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 8.2e-20 102.8 276 36.6
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 1.1e-19 102.4 276 36.2
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 1.2e-18 99.0 333 33.3
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 2.6e-18 97.8 217 37.8
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 2.6e-18 97.8 74 62.2
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 2.2e-17 94.7 207 37.7
PSO541G6299 Papaver somniferum HOM05D004787 ORTHO05D302708 5.0e-17 93.6 364 29.7
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 6.5e-17 93.2 237 31.6
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 8.5e-17 92.8 135 43.0
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 1.9e-16 91.7 135 42.2
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 7.2e-16 89.7 349 28.9
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 9.4e-16 89.4 300 31.3
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 2.3e-14 84.7 151 39.1
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 6.7e-14 83.2 205 36.6
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 4.1e-11 73.9 414 28.0
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 1.2e-10 72.4 415 28.2
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 1.0e-09 69.3 362 27.1
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 3.2e-08 64.3 119 37.0
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 4.7e-07 60.5 273 25.6
RcHm_v2.0_Chr5g0002281 Rosa chinensis HOM05D003404 ORTHO05D029456 1.0e-06 59.3 32 84.4


User provided reference genes

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