Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14049 Corylus avellana HOM05D007503 ORTHO05D009487 7.8e-29 129.8 67 100.0
Haze_14060 Corylus avellana HOM05D007503 ORTHO05D009487 7.8e-29 129.8 67 100.0
CiPaw.03G009100 Carya illinoinensis HOM05D007503 ORTHO05D009487 9.3e-22 106.3 63 87.3
vmacro20740 Vaccinium macrocarpon HOM05D007503 ORTHO05D009487 1.6e-21 105.5 66 77.3
Actinidia06811 Actinidia chinensis HOM05D007503 ORTHO05D009487 6.0e-21 103.6 66 77.3
Rhsim01G0105600 Rhododendron simsii HOM05D007503 ORTHO05D009487 6.0e-21 103.6 66 75.8
GSVIVG01010020001 Vitis vinifera HOM05D007503 ORTHO05D009487 1.0e-20 102.8 66 75.8
MD17G1272500 Malus domestica HOM05D007503 ORTHO05D009487 6.7e-20 100.1 65 73.8
Hma1.2p1_0123F.1_g057900 Hydrangea macrophylla HOM05D007503 ORTHO05D009487 1.1e-19 99.4 66 72.7
Nn1g09784 Nelumbo nucifera HOM05D007503 ORTHO05D009487 1.1e-19 99.4 64 76.6
Hund06856 Selenicereus undatus HOM05D007503 ORTHO05D009487 1.5e-19 99.0 66 75.8
Ciclev10013261m.g Citrus clementina HOM05D007503 ORTHO05D009487 2.5e-19 98.2 65 75.4
HanXRQChr02g0039651 Helianthus annuus HOM05D007503 ORTHO05D009487 2.5e-19 98.2 62 79.0
QL02p056384 Quercus lobata HOM05D007503 ORTHO05D009487 2.5e-19 98.2 62 80.6
Thecc.09G340100 Theobroma cacao HOM05D007503 ORTHO05D009487 3.3e-19 97.8 67 73.1
CANSAT80G2883 Cannabis sativa HOM05D007503 ORTHO05D009487 5.6e-19 97.1 62 74.2
Prupe.3G011500 Prunus persica HOM05D007503 ORTHO05D009487 5.6e-19 97.1 65 73.8
Dinv06977 Davidia involucrata HOM05D007503 ORTHO05D009487 7.4e-19 96.7 65 72.3
Cc09_g03530 Coffea canephora HOM05D007503 ORTHO05D009487 9.6e-19 96.3 64 76.6
Manes.01G240301 Manihot esculenta HOM05D007503 ORTHO05D009487 1.3e-18 95.9 65 70.8
DCAR_007994 Daucus carota HOM05D007503 ORTHO05D009487 1.6e-18 95.5 65 73.8
MD09G1282700 Malus domestica HOM05D007503 ORTHO05D009487 1.6e-18 95.5 65 70.8
RcHm_v2.0_Chr3g0487701 Rosa chinensis HOM05D007503 ORTHO05D009487 1.6e-18 95.5 69 71.0
FAN26G0784 Fragaria x ananassa HOM05D000757 ORTHO05D000622 2.1e-18 95.1 62 79.0
FvH4_1g27230 Fragaria vesca HOM05D007503 ORTHO05D009487 2.8e-18 94.7 64 75.0
FAN19G2707 Fragaria x ananassa HOM05D007503 ORTHO05D009487 2.8e-18 94.7 64 75.0
FAN23G0073 Fragaria x ananassa HOM05D007503 ORTHO05D009487 2.8e-18 94.7 64 75.0
PSO729G0165 Papaver somniferum HOM05D007503 ORTHO05D009487 2.8e-18 94.7 62 72.6
ECA232G1405 Erigeron canadensis HOM05D007503 ORTHO05D009487 3.6e-18 94.4 63 69.8
TWI56G0335 Tripterygium wilfordii HOM05D007503 ORTHO05D009487 3.6e-18 94.4 67 68.7
Potri.014G105250 Populus trichocarpa HOM05D007503 ORTHO05D009487 6.2e-18 93.6 66 72.7
Duzib211G0566 Durio zibethinus HOM05D007503 ORTHO05D009487 1.1e-17 92.8 65 70.8
Eucgr.I00239 Eucalyptus grandis HOM05D007503 ORTHO05D009487 1.1e-17 92.8 65 73.8
Gohir.A11G170200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 1.1e-17 92.8 66 69.7
Gohir.D11G177200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 1.1e-17 92.8 66 69.7
Gorai.007G189300 Gossypium raimondii HOM05D007503 ORTHO05D009487 1.1e-17 92.8 66 69.7
Sc09g0004610 Simmondsia chinensis HOM05D007503 ORTHO05D009487 1.1e-17 92.8 66 71.2
COL.COLO4_13441 Corchorus olitorius HOM05D007503 ORTHO05D009487 1.4e-17 92.4 67 67.2
DCAR_023852 Daucus carota HOM05D007503 ORTHO05D009487 1.4e-17 92.4 65 70.8
SalBow6G4878 Salvia bowleyana HOM05D007503 ORTHO05D009487 1.4e-17 92.4 60 75.0
THA.LOC104822606 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 1.8e-17 92.0 67 68.7
Phvul.006G084000 Phaseolus vulgaris HOM05D007503 ORTHO05D009487 2.4e-17 91.7 66 68.2
BraA01t03971Z Brassica rapa HOM05D007503 ORTHO05D009487 3.1e-17 91.3 67 65.7
Nitab4.5_0001653g0060 Nicotiana tabacum HOM05D007503 ORTHO05D009487 4.0e-17 90.9 60 75.0
THA.LOC104815587 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 5.3e-17 90.5 67 65.7
CDE05G2177 Ceratophyllum demersum HOM05D007503 ORTHO05D009487 9.0e-17 89.7 65 67.7
Lalb_Chr20g0117211 Lupinus albus HOM05D007503 ORTHO05D009487 1.2e-16 89.4 60 71.7
Glyma.18G047300 Glycine max HOM05D007503 ORTHO05D009487 1.5e-16 89.0 66 65.2
Glyma.11G203700 Glycine max HOM05D007503 ORTHO05D009487 2.0e-16 88.6 66 65.2
Lj6g0027028 Lotus japonicus HOM05D007503 ORTHO05D009487 2.0e-16 88.6 63 68.3
Aqoxy5G03063 Aquilegia oxysepala HOM05D007503 ORTHO05D009487 2.6e-16 88.2 58 74.1
Migut.F01879 Erythranthe guttata HOM05D007503 ORTHO05D009487 2.6e-16 88.2 55 76.4
BcaC09g48410 Brassica carinata HOM05D007503 ORTHO05D009487 3.4e-16 87.8 67 61.2
A01p39280 Brassica napus HOM05D007503 ORTHO05D009487 4.5e-16 87.4 67 61.2
CARHR089340 Cardamine hirsuta HOM05D007503 ORTHO05D009487 5.8e-16 87.0 67 62.7
Nitab4.5_0011656g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 5.8e-16 87.0 55 76.4
AT3G14430 Arabidopsis thaliana HOM05D007503 ORTHO05D009487 7.6e-16 86.7 67 61.2
C01p50080 Brassica napus HOM05D007503 ORTHO05D009487 7.6e-16 86.7 67 59.7
BolC1t04962H Brassica oleracea HOM05D007503 ORTHO05D009487 7.6e-16 86.7 67 59.7
Carub.0003s1415 Capsella rubella HOM05D007503 ORTHO05D009487 9.9e-16 86.3 67 61.2
Sp3g12730 Schrenkiella parvula HOM05D007503 ORTHO05D009487 1.3e-15 85.9 67 61.2
Medtr3g063970 Medicago truncatula HOM05D007503 ORTHO05D009487 1.7e-15 85.5 64 67.2
BcaB06g25385 Brassica carinata HOM05D007503 ORTHO05D009487 2.2e-15 85.1 67 59.7
C05p52900 Brassica napus HOM05D007503 ORTHO05D009487 3.8e-15 84.3 67 59.7
BolC5t33967H Brassica oleracea HOM05D007503 ORTHO05D009487 3.8e-15 84.3 67 59.7
unitig_0.g938 Utricularia gibba HOM05D001953 ORTHO05D001904 4.9e-15 84.0 62 67.7
A05p34950 Brassica napus HOM05D007503 ORTHO05D009487 6.4e-15 83.6 66 60.6
BraA05t22309Z Brassica rapa HOM05D007503 ORTHO05D009487 6.4e-15 83.6 66 60.6
AL3G26810 Arabidopsis lyrata HOM05D007503 ORTHO05D009487 8.4e-15 83.2 67 58.2
BcaC05g29084 Brassica carinata HOM05D007503 ORTHO05D009487 8.4e-15 83.2 67 59.7
ClCG01G008330 Citrullus lanatus HOM05D007503 ORTHO05D009487 1.9e-14 82.0 64 59.4
Nitab4.5_0002233g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 1.9e-14 82.0 60 71.7
CAN.G326.18 Capsicum annuum HOM05D007503 ORTHO05D009487 2.4e-14 81.6 60 71.7
Thhalv10021919m.g Eutrema salsugineum HOM05D007503 ORTHO05D009487 2.4e-14 81.6 63 61.9
PGR119G1426 Punica granatum HOM05D007503 ORTHO05D009487 2.4e-14 81.6 58 70.7
Sabra02G0134700 Salix brachista HOM05D007503 ORTHO05D009487 2.4e-14 81.6 65 60.0
Sabra14G0077600 Salix brachista HOM05D007503 ORTHO05D009487 2.4e-14 81.6 66 65.2
MELO3C025073.2 Cucumis melo HOM05D007503 ORTHO05D009487 3.2e-14 81.3 64 59.4
Peaxi162Scf00253g00725 Petunia axillaris HOM05D007503 ORTHO05D009487 3.2e-14 81.3 66 65.2
Aa31LG8G1690 Aethionema arabicum HOM05D007503 ORTHO05D009487 4.2e-14 80.9 67 58.2
CsaV3_5G020250 Cucumis sativus L. HOM05D007503 ORTHO05D009487 4.2e-14 80.9 64 59.4
Sed0018329 Sechium edule HOM05D007503 ORTHO05D009487 4.2e-14 80.9 64 60.9
Solyc03g058340.3 Solanum lycopersicum HOM05D007503 ORTHO05D009487 4.2e-14 80.9 60 70.0
Sopen03g015570 Solanum pennellii HOM05D007503 ORTHO05D009487 4.2e-14 80.9 60 70.0
Pp3c11_25150 Physcomitrium patens HOM05D007503 ORTHO05D009487 1.1e-11 72.8 55 67.3
Os08g0528601 Oryza sativa ssp. japonica HOM05D007503 ORTHO05D009487 1.9e-11 72.0 47 78.7
Zm00001eb036330 Zea mays HOM05D007503 ORTHO05D009487 4.3e-11 70.9 54 64.8
Zm00001eb175060 Zea mays HOM05D007503 ORTHO05D009487 1.3e-10 69.3 53 64.2
Cpa.g.c46349 Carica papaya HOM05D007503 ORTHO05D009487 1.8e-09 65.5 67 50.7
Cpa.g.sc44.91 Carica papaya HOM05D007503 ORTHO05D009487 1.8e-09 65.5 67 50.7
TAR392G0002 Trochodendron aralioides HOM05D007503 ORTHO05D009487 3.1e-09 64.7 43 79.1
Pp3c7_7140 Physcomitrium patens HOM05D007503 ORTHO05D009487 5.3e-09 63.9 55 60.0
CSS0042421 Camellia sinensis var. sinensis HOM05D007503 ORTHO05D009487 1.2e-08 62.8 42 73.8
Aa31LG10G1620 Aethionema arabicum HOM05D007503 ORTHO05D009487 2.0e-08 62.0 66 48.5
Lsat_1_v5_gn_9_48861 Lactuca sativa HOM05D007503 ORTHO05D009487 3.4e-08 61.2 44 68.2
HanXRQChr14g0445891 Helianthus annuus HOM05D007503 ORTHO05D009487 7.6e-08 60.1 42 73.8
arahy.Tifrunner.gnm1.ann1.CKCH2H Arachis hypogaea HOM05D007503 ORTHO05D009487 8.4e-07 56.6 40 70.0
arahy.Tifrunner.gnm1.ann1.17W1X2 Arachis hypogaea HOM05D007503 ORTHO05D009487 1.4e-06 55.8 40 70.0
Mapoly0109s0063 Marchantia polymorpha HOM05D007503 ORTHO05D009487 3.2e-06 54.7 40 72.5
TPR.G29629 Trifolium pratense HOM05D007503 ORTHO05D009487 3.2e-06 54.7 40 72.5


User provided reference genes

Program Settings