Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_13948 Corylus avellana HOM05D006459 ORTHO05D008414 3.9e-218 761.1 379 100.0
Cfa008090 Carpinus fangiana HOM05D006459 ORTHO05D008414 6.3e-184 647.5 335 97.0
CiPaw.03G015900 Carya illinoinensis HOM05D006459 ORTHO05D008414 1.1e-167 593.6 335 86.9
CiPaw.03G015700 Carya illinoinensis HOM05D006459 ORTHO05D008414 5.0e-165 584.7 335 86.3
Thecc.08G176900 Theobroma cacao HOM05D006459 ORTHO05D008414 9.8e-161 570.5 341 82.7
QL09p002119 Quercus lobata HOM05D006459 ORTHO05D008414 3.2e-159 565.5 340 84.1
Actinidia29387 Actinidia chinensis HOM05D006459 ORTHO05D008414 3.5e-158 562.0 341 82.1
Prupe.1G544300 Prunus persica HOM05D006459 ORTHO05D008414 6.0e-158 561.2 340 81.8
Potri.013G099900 Populus trichocarpa HOM05D006459 ORTHO05D008414 5.0e-157 558.1 343 80.5
Gorai.009G266900 Gossypium raimondii HOM05D006459 ORTHO05D008414 1.1e-156 557.0 336 81.8
Potri.019G072900 Populus trichocarpa HOM05D006459 ORTHO05D008414 1.1e-156 557.0 343 79.9
Ciclev10020855m.g Citrus clementina HOM05D006459 ORTHO05D008414 1.5e-156 556.6 340 81.2
Atru.chr13.2479 Acer truncatum HOM05D006459 ORTHO05D008414 4.3e-156 555.1 342 80.7
TAR628G1703 Trochodendron aralioides HOM05D006459 ORTHO05D008414 4.3e-156 555.1 335 81.5
Gohir.D05G255500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 9.5e-156 553.9 336 81.5
MSTRG.1592 Avicennia marina HOM05D006459 ORTHO05D008414 2.8e-155 552.4 338 79.9
Gohir.A05G253500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 2.8e-155 552.4 336 81.2
GSVIVG01036383001 Vitis vinifera HOM05D006459 ORTHO05D008414 1.4e-154 550.1 338 79.9
Cpa.g.sc21.78 Carica papaya HOM05D006459 ORTHO05D008414 2.3e-154 549.3 339 79.6
CSS0029003 Camellia sinensis var. sinensis HOM05D006459 ORTHO05D008414 8.9e-154 547.4 336 78.9
Manes.18G118600 Manihot esculenta HOM05D006459 ORTHO05D008414 1.2e-153 547.0 343 80.5
MD08G1213000 Malus domestica HOM05D006459 ORTHO05D008414 2.0e-153 546.2 340 79.1
Dinv09391 Davidia involucrata HOM05D006459 ORTHO05D008414 3.4e-153 545.4 342 80.4
Glyma.11G014000 Glycine max HOM05D006459 ORTHO05D008414 9.9e-153 543.9 341 78.9
Sabra19G0084300 Salix brachista HOM05D006459 ORTHO05D008414 1.7e-152 543.1 345 77.1
ClCG08G001020 Citrullus lanatus HOM05D006459 ORTHO05D008414 2.2e-152 542.7 334 80.5
CsaV3_5G040000 Cucumis sativus L. HOM05D006459 ORTHO05D008414 2.2e-152 542.7 335 79.7
CAN.G924.3 Capsicum annuum HOM05D006459 ORTHO05D008414 3.7e-152 542.0 335 79.1
VMungo1215G2765 Vigna mungo HOM05D006459 ORTHO05D008414 1.1e-151 540.4 339 77.6
Eucgr.F02979 Eucalyptus grandis HOM05D006459 ORTHO05D008414 4.1e-151 538.5 350 76.3
Phvul.002G036200 Phaseolus vulgaris HOM05D006459 ORTHO05D008414 5.4e-151 538.1 338 77.8
FvH4_5g33360 Fragaria vesca HOM05D006459 ORTHO05D008414 1.2e-150 537.0 339 79.4
RcHm_v2.0_Chr7g0232091 Rosa chinensis HOM05D006459 ORTHO05D008414 1.2e-150 537.0 345 77.1
TWI75G0925 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 1.2e-150 537.0 339 77.9
Sed0024118 Sechium edule HOM05D006459 ORTHO05D008414 1.6e-150 536.6 335 79.7
LjContig00222g0004888 Lotus japonicus HOM05D006459 ORTHO05D008414 2.1e-150 536.2 330 77.3
MBI03_g28420_MAGBIO Magnolia biondii HOM05D006459 ORTHO05D008414 2.1e-150 536.2 346 76.3
Sopen11g018500 Solanum pennellii HOM05D006459 ORTHO05D008414 3.5e-150 535.4 335 77.9
Lalb_Chr09g0320511 Lupinus albus HOM05D006459 ORTHO05D008414 6.0e-150 534.6 328 77.7
Solyc11g042430.2 Solanum lycopersicum HOM05D006459 ORTHO05D008414 6.0e-150 534.6 335 77.9
arahy.Tifrunner.gnm1.ann1.LVU4B6 Arachis hypogaea HOM05D006459 ORTHO05D008414 7.8e-150 534.3 339 77.3
Medtr5g008450 Medicago truncatula HOM05D006459 ORTHO05D008414 7.8e-150 534.3 335 75.8
Migut.C01370 Erythranthe guttata HOM05D006459 ORTHO05D008414 1.0e-149 533.9 342 77.8
Aqoxy5G00842 Aquilegia oxysepala HOM05D006459 ORTHO05D008414 1.7e-149 533.1 347 76.7
COL.COLO4_24570 Corchorus olitorius HOM05D006459 ORTHO05D008414 3.9e-149 531.9 345 76.8
Psat2g187200 Pisum sativum HOM05D006459 ORTHO05D008414 5.1e-149 531.6 335 75.5
CANSAT54G1068 Cannabis sativa HOM05D006459 ORTHO05D008414 1.1e-148 530.4 336 77.7
Ca_24473_v3 Cicer arietinum L. HOM05D006459 ORTHO05D008414 4.3e-148 528.5 335 75.8
Sp6g07420 Schrenkiella parvula HOM05D006459 ORTHO05D008414 5.6e-148 528.1 336 77.1
Lsat_1_v5_gn_4_65220 Lactuca sativa HOM05D006459 ORTHO05D008414 7.3e-148 527.7 334 76.0
Cc10_g08780 Coffea canephora HOM05D006459 ORTHO05D008414 1.2e-147 526.9 329 77.5
BcaB01g02766 Brassica carinata HOM05D006459 ORTHO05D008414 6.2e-147 524.6 336 76.8
MELO3C022178.2 Cucumis melo HOM05D006459 ORTHO05D008414 1.4e-146 523.5 337 76.6
HanXRQChr14g0455131 Helianthus annuus HOM05D006459 ORTHO05D008414 1.4e-146 523.5 334 76.6
SalBow7G1102 Salvia bowleyana HOM05D006459 ORTHO05D008414 1.8e-146 523.1 338 75.1
BcaC01g04692 Brassica carinata HOM05D006459 ORTHO05D008414 2.4e-146 522.7 336 76.8
BolC3t15799H Brassica oleracea HOM05D006459 ORTHO05D008414 2.4e-146 522.7 336 76.8
THA.LOC104815846 Tarenaya hassleriana HOM05D006459 ORTHO05D008414 2.4e-146 522.7 338 75.4
BraA03t12083Z Brassica rapa HOM05D006459 ORTHO05D008414 3.1e-146 522.3 336 76.8
Aa31LG9G11940 Aethionema arabicum HOM05D006459 ORTHO05D008414 4.0e-146 521.9 338 77.2
EL10Ac1g01666 Beta vulgaris HOM05D006459 ORTHO05D008414 4.0e-146 521.9 336 76.5
Thhalv10028776m.g Eutrema salsugineum HOM05D006459 ORTHO05D008414 4.0e-146 521.9 333 76.6
AL6G43830 Arabidopsis lyrata HOM05D006459 ORTHO05D008414 6.8e-146 521.2 335 75.8
HPP92_005641 Vanilla planifolia HOM05D006459 ORTHO05D008414 2.0e-145 519.6 337 74.8
AT4G10050 Arabidopsis thaliana HOM05D006459 ORTHO05D008414 2.6e-145 519.2 338 76.0
PGR042G0716 Punica granatum HOM05D006459 ORTHO05D008414 2.6e-145 519.2 338 74.9
A03p28850 Brassica napus HOM05D006459 ORTHO05D008414 5.8e-145 518.1 335 75.8
C03p34880 Brassica napus HOM05D006459 ORTHO05D008414 9.9e-145 517.3 336 76.2
Oeu023200.3 Olea europaea HOM05D006459 ORTHO05D008414 9.9e-145 517.3 300 82.7
Carub.0006s2860 Capsella rubella HOM05D006459 ORTHO05D008414 2.2e-144 516.2 335 75.5
ECA234G2100 Erigeron canadensis HOM05D006459 ORTHO05D008414 4.9e-144 515.0 339 73.7
PSO170G3138 Papaver somniferum HOM05D006459 ORTHO05D008414 2.1e-142 509.6 335 72.2
TPR.G37896 Trifolium pratense HOM05D006459 ORTHO05D008414 2.1e-142 509.6 387 66.1
ATR1089G027 Amborella trichopoda HOM05D006459 ORTHO05D008414 2.5e-140 502.7 333 73.9
FAN04G1764 Fragaria x ananassa HOM05D006459 ORTHO05D008414 5.6e-140 501.5 368 71.2
PSO017G7078 Papaver somniferum HOM05D006459 ORTHO05D008414 3.6e-139 498.8 335 71.3
Os04g0443500 Oryza sativa ssp. japonica HOM05D006459 ORTHO05D008414 8.1e-139 497.7 335 72.2
Nitab4.5_0000903g0050 Nicotiana tabacum HOM05D006459 ORTHO05D008414 3.4e-137 492.3 335 74.6
Peaxi162Scf00078g00423 Petunia axillaris HOM05D006459 ORTHO05D008414 4.4e-137 491.9 336 73.8
MD15G1395500 Malus domestica HOM05D006459 ORTHO05D008414 5.8e-137 491.5 341 73.9
unitig_8.g4894 Utricularia gibba HOM05D006459 ORTHO05D008414 1.4e-135 486.9 341 70.1
Zm00001eb082080 Zea mays HOM05D006459 ORTHO05D008414 3.9e-133 478.8 343 68.8
AagrBONN_evm.TU.Sc2ySwM_117.506 Anthoceros agrestis HOM05D006459 ORTHO05D008414 9.9e-129 464.2 325 68.0
TWI12G1446 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 9.9e-129 464.2 263 85.2
Pp3c6_4660 Physcomitrium patens HOM05D006459 ORTHO05D008414 4.6e-126 455.3 343 64.4
Nitab4.5_0000999g0010 Nicotiana tabacum HOM05D006459 ORTHO05D008414 2.1e-123 446.4 335 69.6
Mapoly0007s0278 Marchantia polymorpha HOM05D006459 ORTHO05D008414 2.2e-120 436.4 330 63.6
arahy.Tifrunner.gnm1.ann1.K3NID2 Arachis hypogaea HOM05D006459 ORTHO05D008414 2.9e-120 436.0 375 63.2
AUR62034346 Chenopodium quinoa HOM05D006459 ORTHO05D008414 1.1e-116 424.1 247 83.4
SMO356G0681 Selaginella moellendorffii HOM05D006459 ORTHO05D008414 2.8e-115 419.5 319 64.3
Lj9A698G57 Lonicera japonica HOM05D006459 ORTHO05D008414 1.8e-114 416.8 334 65.9
Nitab4.5_0003013g0010 Nicotiana tabacum HOM05D006459 ORTHO05D008414 6.9e-114 414.8 335 65.7
Duzib268G1319 Durio zibethinus HOM05D006459 ORTHO05D008414 2.0e-113 413.3 341 64.5
Rhsim02G0145500 Rhododendron simsii HOM05D006459 ORTHO05D008414 2.2e-112 409.8 536 48.5
DCAR_017359 Daucus carota HOM05D006459 ORTHO05D008414 1.8e-109 400.2 229 83.8
Sc25g0003010 Simmondsia chinensis HOM05D006459 ORTHO05D008414 1.1e-106 391.0 222 84.2
SGA_v2.0_scaffold118G32601 Striga asiatica HOM05D006459 ORTHO05D008414 1.5e-105 387.1 367 59.1
Nn5g27277 Nelumbo nucifera HOM05D006459 ORTHO05D008414 1.1e-103 380.9 249 79.5
Hma1.2p1_0074F.1_g039070 Hydrangea macrophylla HOM05D006459 ORTHO05D008414 1.4e-85 320.9 182 83.5
SHI16717 Sapria himalayana HOM05D006459 ORTHO05D008414 1.9e-79 300.4 328 51.2
Hma1.2p1_0074F.1_g039080 Hydrangea macrophylla HOM05D006459 ORTHO05D008414 1.6e-73 280.8 155 82.6
vmacro16046 Vaccinium macrocarpon HOM05D006459 ORTHO05D008414 4.5e-73 279.3 177 78.5
CBR_g45928 Chara braunii HOM05D006459 ORTHO05D008414 2.7e-70 270.0 217 60.4
Cre12.g521250 Chlamydomonas reinhardtii HOM05D006459 ORTHO05D008414 4.4e-68 262.7 400 39.2
Haze_26337 Corylus avellana HOM05D006459 ORTHO05D008414 2.0e-65 253.8 319 45.1
HPP92_005619 Vanilla planifolia HOM05D006459 ORTHO05D008414 1.2e-57 228.0 123 82.9
Glyma.01G230800 Glycine max HOM05D006459 ORTHO05D008414 1.9e-55 220.7 127 83.5
MCO04G089 Micromonas commoda HOM05D006459 ORTHO05D008414 2.2e-51 207.2 326 40.5
PRCOL_00002994 Prasinoderma coloniale HOM05D006459 ORTHO05D008414 1.2e-49 201.4 345 37.7
SEGI_15073 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 2.0e-44 184.1 126 69.0
HPP92_005618 Vanilla planifolia HOM05D006459 ORTHO05D008414 1.0e-40 171.8 97 83.5
SMO272G0012 Selaginella moellendorffii HOM05D006459 ORTHO05D008414 4.4e-36 156.4 95 73.7
vmacro16045 Vaccinium macrocarpon HOM05D006459 ORTHO05D008414 4.9e-35 152.9 86 82.6
CBR_g27970 Chara braunii HOM05D006459 ORTHO05D008414 5.4e-26 122.9 78 73.1
SEGI_06082 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 6.4e-19 99.4 76 64.5
FAN08G1548 Fragaria x ananassa HOM05D006459 ORTHO05D008414 1.9e-18 97.8 53 79.2
Nn179s44626 Nelumbo nucifera HOM05D006459 ORTHO05D008414 1.5e-15 88.2 56 85.7
MELO3C033538.2 Cucumis melo HOM05D006459 ORTHO05D169875 8.4e-11 72.4 167 33.5
SEGI_00088 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 2.1e-09 67.8 38 71.1
SEGI_14439 Sequoiadendron giganteum HOM05D006459 ORTHO05D385787 2.1e-09 67.8 65 55.4
Cc11_g11300 Coffea canephora HOM05D003438 ORTHO05D004235 2.8e-06 57.4 267 24.0
Lsat_1_v5_gn_2_49420 Lactuca sativa HOM05D006459 ORTHO05D008414 2.8e-06 57.4 30 86.7
Os02g0581500 Oryza sativa ssp. japonica HOM05D003438 ORTHO05D004235 2.8e-06 57.4 279 24.0


User provided reference genes

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