Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 7.9e-32 139.8 70 100.0
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 3.3e-30 134.4 70 94.3
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 1.9e-25 118.6 74 85.1
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 5.1e-23 110.5 70 77.1
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 3.3e-22 107.8 71 78.9
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 3.3e-22 107.8 69 75.4
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 4.4e-22 107.5 71 80.3
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 9.7e-22 106.3 74 77.0
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 3.7e-21 104.4 71 77.5
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 3.7e-21 104.4 70 75.7
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 6.3e-21 103.6 73 75.3
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 1.8e-20 102.1 84 64.3
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 3.1e-20 101.3 71 73.2
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 3.1e-20 101.3 71 74.6
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 6.9e-20 100.1 72 69.4
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 6.9e-20 100.1 75 69.3
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 1.2e-19 99.4 77 64.9
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 1.5e-19 99.0 77 67.5
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 1.5e-19 99.0 70 71.4
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 2.0e-19 98.6 76 67.1
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 2.6e-19 98.2 75 70.7
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.6e-19 98.2 75 68.0
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 2.6e-19 98.2 76 67.1
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 4.5e-19 97.4 67 71.6
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 7.7e-19 96.7 73 71.2
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 1.0e-18 96.3 71 74.6
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 1.0e-18 96.3 71 74.6
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 1.0e-18 96.3 72 73.6
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 1.3e-18 95.9 77 64.9
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 1.7e-18 95.5 62 75.8
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 2.9e-18 94.7 80 65.0
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 2.9e-18 94.7 71 71.8
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 2.9e-18 94.7 79 65.8
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 2.9e-18 94.7 79 65.8
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 3.8e-18 94.4 78 67.9
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 5.0e-18 94.0 82 63.4
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 8.5e-18 93.2 83 62.7
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 8.5e-18 93.2 83 62.7
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 8.5e-18 93.2 78 62.8
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 1.1e-17 92.8 76 63.2
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 1.4e-17 92.4 76 64.5
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 1.9e-17 92.0 55 81.8
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 1.9e-17 92.0 70 70.0
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 2.5e-17 91.7 78 60.3
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.5e-17 91.7 76 65.8
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.5e-17 91.7 76 65.8
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 3.2e-17 91.3 76 69.7
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 3.2e-17 91.3 70 70.0
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 5.5e-17 90.5 76 68.4
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 7.2e-17 90.1 73 61.6
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 9.4e-17 89.7 81 64.2
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 1.2e-16 89.4 88 56.8
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 1.6e-16 89.0 76 63.2
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 1.6e-16 89.0 79 60.8
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 2.1e-16 88.6 82 62.2
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 2.1e-16 88.6 45 93.3
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 3.6e-16 87.8 61 70.5
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 4.7e-16 87.4 55 80.0
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 4.7e-16 87.4 63 69.8
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 4.7e-16 87.4 63 69.8
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 4.7e-16 87.4 64 70.3
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 4.7e-16 87.4 85 61.2
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 6.1e-16 87.0 43 95.3
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 6.1e-16 87.0 45 91.1
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 6.1e-16 87.0 45 91.1
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 6.1e-16 87.0 45 91.1
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 6.1e-16 87.0 45 91.1
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 6.1e-16 87.0 47 87.2
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 6.1e-16 87.0 47 87.2
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 8.0e-16 86.7 77 63.6
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 1.0e-15 86.3 77 61.0
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 1.4e-15 85.9 79 58.2
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 1.8e-15 85.5 82 63.4
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.3e-15 85.1 46 84.8
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 2.3e-15 85.1 81 58.0
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 2.3e-15 85.1 42 95.2
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 2.3e-15 85.1 56 76.8
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 3.0e-15 84.7 62 71.0
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 3.9e-15 84.3 81 56.8
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 5.2e-15 84.0 42 92.9
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 5.2e-15 84.0 82 56.1
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 5.2e-15 84.0 91 54.9
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 5.2e-15 84.0 55 76.4
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 5.2e-15 84.0 42 97.6
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 6.7e-15 83.6 40 100.0
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 8.8e-15 83.2 48 81.2
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 8.8e-15 83.2 60 70.0
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 1.1e-14 82.8 46 84.8
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 1.1e-14 82.8 50 84.0
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 1.5e-14 82.4 77 61.0
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 2.6e-14 81.6 61 72.1
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 2.6e-14 81.6 64 67.2
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 2.6e-14 81.6 50 84.0
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 2.2e-13 78.6 61 63.9
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 2.2e-13 78.6 41 90.2
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 2.2e-13 78.6 41 90.2
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 2.2e-13 78.6 41 90.2
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 3.7e-13 77.8 62 66.1
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 6.3e-13 77.0 91 49.5
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 8.2e-13 76.6 41 87.8
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 8.2e-13 76.6 47 74.5
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 1.4e-12 75.9 37 97.3
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 1.4e-12 75.9 53 73.6
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 1.4e-12 75.9 41 85.4
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 1.4e-12 75.9 51 74.5
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 1.8e-12 75.5 48 79.2
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 1.8e-12 75.5 48 79.2
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 3.1e-12 74.7 70 60.0
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 4.1e-12 74.3 48 77.1
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 4.1e-12 74.3 48 77.1
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 4.1e-12 74.3 48 77.1
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 4.1e-12 74.3 48 77.1
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 4.1e-12 74.3 48 77.1
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 5.3e-12 73.9 57 64.9
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 5.3e-12 73.9 38 89.5
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.0e-11 72.0 40 80.0
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.6e-11 71.6 40 80.0
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 4.5e-11 70.9 67 55.2
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 7.7e-11 70.1 37 86.5
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 2.9e-10 68.2 39 79.5
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.9e-10 68.2 39 79.5
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.9e-10 68.2 39 79.5
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 6.5e-10 67.0 55 61.8
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 8.5e-10 66.6 39 76.9
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 1.5e-09 65.9 39 74.4
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 3.2e-09 64.7 39 74.4
arahy.Tifrunner.gnm1.ann1.FD9URB Arachis hypogaea HOM05D012186 ORTHO05D004670 8.8e-07 56.6 63 55.6


User provided reference genes

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