Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 2.3e-141 505.8 289 100.0
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 1.4e-114 416.8 253 95.7
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 4.2e-103 378.6 254 83.5
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 4.6e-102 375.2 254 83.1
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 4.6e-102 375.2 254 83.1
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 8.2e-99 364.4 254 79.1
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 8.2e-99 364.4 253 79.4
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 6.9e-98 361.3 253 79.1
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.5e-97 360.1 268 75.7
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.5e-97 360.1 268 75.7
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 3.4e-97 359.0 268 73.9
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 2.2e-96 356.3 268 73.9
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 8.4e-96 354.4 253 79.8
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 8.4e-96 354.4 268 75.0
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 1.4e-95 353.6 253 79.1
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 2.5e-95 352.8 268 73.5
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 3.2e-95 352.4 268 73.9
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 3.2e-95 352.4 268 75.4
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 4.2e-95 352.1 253 78.7
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 5.5e-95 351.7 253 78.7
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 1.2e-94 350.5 268 73.5
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 2.1e-94 349.7 253 78.7
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.1e-94 349.7 268 74.6
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 2.7e-94 349.4 253 75.5
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 3.5e-94 349.0 253 76.3
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 4.6e-94 348.6 253 76.7
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 4.6e-94 348.6 253 76.3
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 6.0e-94 348.2 253 78.3
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.3e-93 347.1 259 75.3
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 1.8e-93 346.7 254 75.6
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 2.3e-93 346.3 253 75.5
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.0e-93 345.9 253 76.7
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 3.0e-93 345.9 254 76.8
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 3.0e-93 345.9 253 77.5
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 3.9e-93 345.5 253 75.9
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.9e-93 345.5 253 75.9
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 5.1e-93 345.1 253 75.9
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 6.7e-93 344.7 253 77.9
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.7e-93 344.7 268 75.0
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 6.7e-93 344.7 253 76.3
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.1e-92 344.0 253 77.1
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 1.1e-92 344.0 253 78.3
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 1.9e-92 343.2 253 74.3
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 2.5e-92 342.8 253 74.7
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.5e-92 342.8 253 75.1
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 3.3e-92 342.4 253 76.7
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 3.3e-92 342.4 253 74.3
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.3e-92 342.0 253 75.9
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 5.7e-92 341.7 288 69.4
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 2.2e-91 339.7 253 77.5
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 4.8e-91 338.6 253 73.9
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 6.3e-91 338.2 262 74.0
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 1.8e-90 336.7 253 76.7
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 2.4e-90 336.3 253 73.5
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 3.1e-90 335.9 253 76.3
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 3.1e-90 335.9 253 73.5
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 5.3e-90 335.1 259 74.1
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 9.0e-90 334.3 255 77.3
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.5e-89 333.6 268 72.0
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 2.0e-89 333.2 253 76.7
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 1.0e-88 330.9 253 75.5
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.3e-88 330.5 253 75.5
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 1.7e-88 330.1 258 72.1
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.7e-88 330.1 253 75.5
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.2e-88 329.7 241 78.0
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 2.9e-88 329.3 253 71.1
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 3.8e-88 328.9 253 73.5
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 5.0e-88 328.6 274 69.0
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 1.1e-87 327.4 268 69.0
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 1.9e-87 326.6 268 69.0
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 7.2e-87 324.7 268 67.2
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 7.2e-87 324.7 268 70.5
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.2e-86 323.9 253 69.6
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 3.6e-86 322.4 253 70.8
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 7.9e-86 321.2 253 70.4
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.0e-85 320.9 276 67.4
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 1.0e-85 320.9 253 70.4
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 1.4e-85 320.5 253 70.0
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 1.4e-85 320.5 253 72.7
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 1.4e-85 320.5 253 72.7
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 3.9e-85 318.9 253 70.4
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 8.8e-85 317.8 253 68.8
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 1.1e-84 317.4 253 69.6
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 2.0e-84 316.6 253 69.6
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 4.3e-84 315.5 269 67.3
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 5.7e-84 315.1 250 71.6
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 5.7e-84 315.1 253 68.0
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 5.7e-84 315.1 252 69.4
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 9.7e-84 314.3 269 67.3
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 1.3e-83 313.9 253 68.8
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 2.2e-83 313.2 253 68.4
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 2.8e-83 312.8 336 57.7
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 4.8e-83 312.0 253 72.7
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 6.3e-83 311.6 253 71.1
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 1.5e-81 307.0 253 72.3
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 2.6e-81 306.2 256 68.0
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 7.7e-81 304.7 253 67.6
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 1.3e-80 303.9 256 67.2
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 6.5e-80 301.6 253 69.2
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 1.4e-79 300.4 254 67.7
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 2.1e-78 296.6 253 65.6
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 2.1e-78 296.6 253 65.6
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 2.1e-78 296.6 253 65.6
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 3.6e-78 295.8 253 66.0
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 7.9e-78 294.7 253 67.2
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.9e-78 294.7 251 64.5
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 1.4e-77 293.9 245 68.2
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 1.1e-76 290.8 254 65.4
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 1.1e-76 290.8 254 63.0
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 1.5e-76 290.4 254 65.0
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 1.5e-76 290.4 254 63.8
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 3.7e-75 285.8 253 64.4
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 1.4e-71 273.9 259 62.5
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 1.4e-71 273.9 259 62.5
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 1.4e-71 273.9 259 62.5
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 4.2e-71 272.3 253 65.2
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 1.2e-70 270.8 255 60.8
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 1.1e-68 264.2 253 58.9
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 8.2e-67 258.1 254 58.3
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.5e-63 246.5 202 68.8
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.4e-61 240.7 197 65.5
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 5.2e-53 212.2 175 70.3
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 3.5e-41 172.9 253 48.6
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 5.0e-40 169.1 255 47.1
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 6.4e-35 152.1 209 45.0
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 4.6e-33 146.0 252 41.3
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 1.4e-26 124.4 251 35.1
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.2e-26 123.2 102 66.7
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 4.6e-25 119.4 79 75.9
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.7e-24 117.5 92 69.6
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.5e-20 104.4 145 51.7
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 3.4e-20 103.2 228 33.3
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.9e-18 97.4 283 31.1
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 4.1e-18 96.3 78 64.1
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 3.5e-17 93.2 202 38.1
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 1.3e-16 91.3 282 28.4
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 8.1e-14 82.0 62 64.5
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 8.1e-14 82.0 62 64.5
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 5.8e-12 75.9 71 60.6
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.6e-12 75.5 62 59.7
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 3.2e-10 70.1 59 67.8


User provided reference genes

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