Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 1.3e-263 912.5 458 100.0
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 6.2e-194 681.0 348 94.5
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 8.5e-167 590.9 347 80.4
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 6.3e-154 548.1 348 74.4
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 1.4e-145 520.4 346 70.5
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 1.8e-145 520.0 346 70.8
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 5.4e-145 518.5 346 70.2
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 1.1e-142 510.8 348 69.5
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 4.2e-142 508.8 348 68.4
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 7.2e-142 508.1 349 68.2
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 9.5e-142 507.7 360 67.5
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 1.4e-140 503.8 348 69.3
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.8e-140 503.4 346 68.8
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 2.3e-140 503.1 346 68.5
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 8.8e-140 501.1 346 68.2
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 5.7e-139 498.4 346 68.2
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 1.7e-138 496.9 348 67.0
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 2.8e-138 496.1 348 66.4
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 6.3e-138 495.0 348 66.7
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 9.2e-137 491.1 348 65.8
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 1.3e-135 487.3 349 63.3
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 3.3e-134 482.6 349 65.3
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 3.3e-134 482.6 349 65.0
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 4.3e-134 482.3 348 66.1
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 2.8e-133 479.6 349 64.5
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 6.1e-133 478.4 351 65.5
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 8.0e-133 478.0 347 64.3
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 1.8e-132 476.9 352 61.9
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 1.2e-131 474.2 350 63.7
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 1.2e-131 474.2 352 62.2
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 3.4e-131 472.6 348 63.5
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 5.7e-131 471.9 345 64.6
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 6.4e-130 468.4 345 64.3
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 1.4e-129 467.2 347 64.0
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 1.4e-129 467.2 342 64.9
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 3.2e-129 466.1 366 59.8
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 1.2e-128 464.2 366 59.6
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 2.7e-128 463.0 349 63.3
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 2.7e-128 463.0 345 60.9
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 4.6e-128 462.2 313 68.7
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 7.8e-128 461.5 349 63.0
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 1.0e-127 461.1 347 64.0
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 1.3e-127 460.7 358 59.8
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 8.6e-127 458.0 363 58.7
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 8.6e-127 458.0 359 59.6
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 1.9e-126 456.8 349 61.6
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 1.9e-126 456.8 301 70.1
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 2.5e-126 456.4 352 59.4
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 2.5e-126 456.4 340 62.6
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 2.5e-126 456.4 337 61.1
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 7.3e-126 454.9 334 63.8
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 3.6e-125 452.6 340 62.1
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 6.2e-125 451.8 381 60.1
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 8.0e-125 451.4 339 64.0
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 1.1e-124 451.1 349 61.0
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 1.4e-124 450.7 350 60.6
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 1.8e-124 450.3 322 65.2
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 2.0e-123 446.8 309 65.0
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 2.0e-123 446.8 349 61.6
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 4.4e-123 445.7 340 61.2
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 5.8e-123 445.3 359 58.5
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 5.8e-123 445.3 349 59.9
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 5.8e-123 445.3 351 58.4
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 4.9e-122 442.2 349 60.7
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 1.9e-121 440.3 302 65.6
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 4.1e-121 439.1 338 63.3
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 1.6e-120 437.2 354 59.3
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 3.5e-120 436.0 349 57.6
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 4.6e-120 435.6 304 68.4
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 3.0e-119 433.0 340 58.8
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 3.9e-119 432.6 348 59.8
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 6.6e-119 431.8 332 59.3
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 1.2e-117 427.6 346 56.1
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 1.8e-116 423.7 347 57.6
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 2.6e-115 419.9 335 58.8
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 1.3e-114 417.5 348 58.6
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 6.4e-114 415.2 344 58.1
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 7.1e-113 411.8 348 56.3
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 2.7e-112 409.8 349 56.4
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 6.0e-112 408.7 329 56.5
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 2.3e-111 406.8 348 56.6
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 5.6e-110 402.1 353 55.8
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 1.8e-108 397.1 286 62.9
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 4.0e-108 396.0 348 54.9
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 8.9e-108 394.8 348 54.3
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 4.4e-107 392.5 348 54.0
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 5.8e-107 392.1 326 58.0
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 9.9e-107 391.3 350 54.6
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 2.4e-105 386.7 352 52.8
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 2.4e-105 386.7 293 60.4
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 6.0e-104 382.1 349 53.0
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 6.0e-104 382.1 349 53.0
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.3e-103 380.9 341 54.5
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 6.6e-103 378.6 348 52.3
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 8.1e-101 371.7 329 50.8
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 3.1e-100 369.8 349 50.7
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 2.0e-99 367.1 349 50.1
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 1.3e-98 364.4 283 59.4
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 2.2e-98 363.6 339 52.2
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 8.4e-98 361.7 339 54.6
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 7.1e-97 358.6 299 55.2
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 5.1e-95 352.4 325 49.8
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 3.6e-93 346.3 250 62.8
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 4.2e-81 306.2 268 53.7
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 7.9e-80 302.0 220 62.3
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 1.9e-78 297.4 343 43.7
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 4.3e-78 296.2 285 47.4
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 4.0e-76 289.7 329 43.8
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 8.4e-74 282.0 364 40.1
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 3.5e-72 276.6 307 49.5
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 1.0e-71 275.0 349 41.5
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 5.1e-71 272.7 296 46.6
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 3.3e-62 243.4 336 38.7
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 4.1e-60 236.5 190 54.2
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.0e-58 231.9 154 70.8
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-52 211.5 291 38.5
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.5e-50 202.6 288 37.5
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.7e-48 197.2 300 35.7
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.0e-47 195.3 291 38.5
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.7e-47 192.6 311 34.7
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 8.8e-47 192.2 282 35.5
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-46 191.4 315 35.2
Haze_25543 Corylus avellana HOM05D015968 ORTHO05D017887 8.2e-45 185.7 108 91.7
Haze_21919 Corylus avellana HOM05D015968 ORTHO05D017887 9.1e-44 182.2 109 89.9
Haze_06915 Corylus avellana HOM05D015968 ORTHO05D017887 3.8e-42 176.8 109 87.2
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 5.0e-42 176.4 286 35.0
Haze_21920 Corylus avellana HOM05D015968 ORTHO05D017887 6.5e-42 176.0 109 87.2
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-41 175.3 281 35.6
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.5e-41 174.1 346 30.6
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.2e-41 173.7 295 35.3
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.6e-40 171.4 301 33.9
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 2.7e-40 170.6 296 34.5
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.7e-40 169.9 306 33.7
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.0e-39 168.7 300 32.7
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.4e-38 163.3 300 31.0
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.2e-37 161.0 240 35.8
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.2e-33 147.1 297 32.7
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 9.4e-33 145.6 291 32.3
Haze_21917 Corylus avellana HOM05D015968 ORTHO05D017887 2.7e-32 144.1 86 88.4
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 6.1e-32 142.9 323 29.7
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.2e-31 139.8 297 31.6
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.0e-26 123.2 276 30.8
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 6.1e-24 116.3 280 30.0
Haze_20039 Corylus avellana HOM05D015968 ORTHO05D017887 1.8e-23 114.8 72 84.7
Haze_10630 Corylus avellana HOM05D002023 ORTHO05D002049 1.1e-17 95.5 60 83.3
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-13 82.0 63 54.0
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 6.4e-13 79.7 74 47.3
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.2e-11 75.5 152 32.9
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 2.0e-11 74.7 64 48.4
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 4.6e-11 73.6 96 37.5


User provided reference genes

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