Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 1.1e-181 639.8 320 100.0
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 2.1e-140 502.7 314 79.6
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 5.6e-133 478.0 320 78.4
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 2.1e-127 459.5 335 71.6
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 9.6e-125 450.7 287 79.4
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 2.4e-123 446.0 290 76.9
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 3.1e-123 445.7 323 71.8
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 5.3e-123 444.9 287 77.4
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 2.6e-122 442.6 337 69.1
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 1.7e-121 439.9 247 87.0
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 2.2e-121 439.5 318 71.4
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 4.9e-121 438.3 255 83.9
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 4.9e-121 438.3 313 71.9
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 6.4e-121 438.0 270 80.4
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.4e-120 436.8 288 72.9
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 1.9e-120 436.4 319 71.2
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 4.2e-120 435.3 310 71.3
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 9.3e-120 434.1 280 76.8
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 9.3e-120 434.1 280 76.8
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.6e-119 433.3 321 69.5
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.6e-119 433.3 283 74.9
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.6e-119 433.3 283 74.9
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 2.7e-119 432.6 253 83.0
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 3.5e-119 432.2 281 76.2
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 6.0e-119 431.4 290 75.5
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 6.0e-119 431.4 315 72.1
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 7.9e-119 431.0 326 69.6
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.0e-118 430.6 310 73.5
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.0e-118 430.6 283 74.6
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 1.8e-118 429.9 315 70.5
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 3.9e-118 428.7 290 74.1
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 5.1e-118 428.3 266 78.9
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 6.7e-118 427.9 285 72.3
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 8.7e-118 427.6 289 75.1
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 1.1e-117 427.2 286 74.5
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 1.5e-117 426.8 295 73.2
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.5e-117 426.8 280 76.4
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 4.3e-117 425.2 282 75.2
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 4.3e-117 425.2 242 83.9
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 5.6e-117 424.9 277 76.2
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 7.4e-117 424.5 245 82.4
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 7.4e-117 424.5 277 76.9
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 7.4e-117 424.5 286 71.7
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 2.1e-116 422.9 274 77.7
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 2.1e-116 422.9 245 83.3
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 2.8e-116 422.5 309 70.9
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 3.6e-116 422.2 289 71.3
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 4.8e-116 421.8 295 69.8
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 6.2e-116 421.4 277 74.0
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 6.2e-116 421.4 277 75.8
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 8.1e-116 421.0 290 73.8
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 1.1e-115 420.6 252 78.2
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 1.4e-115 420.2 316 67.4
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 1.8e-115 419.9 273 72.5
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 1.8e-115 419.9 318 66.0
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 2.4e-115 419.5 247 79.4
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 3.1e-115 419.1 291 71.8
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 4.0e-115 418.7 280 74.3
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 5.3e-115 418.3 273 72.2
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 6.9e-115 417.9 283 70.3
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 9.0e-115 417.5 303 68.3
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 9.0e-115 417.5 277 75.1
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 9.0e-115 417.5 244 82.0
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.2e-114 417.2 291 71.5
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 9.9e-114 414.1 266 76.3
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 1.7e-113 413.3 247 78.5
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 1.7e-113 413.3 314 67.5
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 6.4e-113 411.4 308 65.3
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 2.4e-112 409.5 299 68.6
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 3.2e-112 409.1 252 77.8
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 9.3e-112 407.5 317 63.4
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 9.3e-112 407.5 308 66.9
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.6e-111 406.8 311 67.8
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 2.7e-111 406.0 273 71.8
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 4.6e-111 405.2 288 69.8
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 7.9e-111 404.4 303 68.6
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 1.0e-110 404.1 248 75.8
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.3e-110 403.7 296 70.3
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.5e-109 400.2 244 76.2
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 1.5e-109 400.2 248 75.4
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 2.5e-109 399.4 307 66.4
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 4.3e-109 398.7 297 67.0
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 1.6e-108 396.7 247 74.1
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 2.1e-108 396.4 340 64.4
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 6.2e-108 394.8 246 75.6
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 2.4e-107 392.9 243 76.1
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 2.4e-107 392.9 364 59.1
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 2.4e-107 392.9 291 68.0
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 6.9e-107 391.3 297 67.0
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 1.5e-106 390.2 297 68.0
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 2.0e-106 389.8 278 66.5
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 1.3e-105 387.1 242 76.0
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 3.2e-104 382.5 288 66.7
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 7.1e-104 381.3 285 69.5
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 8.7e-102 374.4 453 51.2
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 3.3e-101 372.5 269 71.0
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 4.8e-100 368.6 259 70.7
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 1.5e-98 363.6 276 64.1
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 4.5e-98 362.1 212 81.6
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.1e-96 357.5 342 54.4
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 2.7e-95 352.8 314 63.7
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 7.9e-95 351.3 249 71.1
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.3e-93 345.9 321 58.9
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.1e-91 340.9 214 71.5
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.4e-91 339.7 247 68.8
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 3.1e-91 339.3 240 66.2
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 1.2e-90 337.4 215 77.2
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 5.9e-90 335.1 245 62.9
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 1.8e-86 323.6 256 64.8
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 2.3e-86 323.2 167 97.0
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 4.1e-83 312.4 222 68.5
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 4.7e-79 298.9 231 64.9
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 6.5e-73 278.5 215 60.9
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 2.5e-72 276.6 242 55.0
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 7.5e-69 265.0 179 72.6
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 3.1e-67 259.6 167 73.7
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 1.6e-66 257.3 224 60.3
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 1.6e-66 257.3 159 79.2
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 7.7e-66 255.0 245 50.2
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 3.8e-65 252.7 144 85.4
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 3.2e-64 249.6 248 52.8
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 1.5e-61 240.7 192 66.7
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 5.4e-59 232.3 206 63.6
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 3.5e-58 229.6 299 48.5
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 7.7e-58 228.4 242 44.2
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 6.5e-57 225.3 137 79.6
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 3.6e-55 219.5 137 77.4
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 4.9e-52 209.1 161 67.7
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 2.4e-51 206.8 133 73.7
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 3.5e-50 203.0 129 78.3
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.7e-49 200.7 155 61.9
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 5.0e-49 199.1 237 43.5
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 6.6e-49 198.7 110 88.2
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 6.1e-47 192.2 103 86.4
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 5.2e-46 189.1 112 78.6
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.8e-43 180.6 232 42.2
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.8e-43 180.6 181 55.8
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.4e-43 180.3 111 71.2
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 7.0e-43 178.7 136 64.7
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 7.0e-43 178.7 136 64.7
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 2.3e-38 163.7 164 53.7
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 9.8e-37 158.3 223 39.9
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 1.3e-36 157.9 99 69.7
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.3e-36 157.9 92 79.3
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 7.0e-35 152.1 82 80.5
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 1.3e-33 147.9 79 86.1
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 1.3e-33 147.9 76 90.8
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 1.7e-33 147.5 104 69.2
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 1.1e-32 144.8 247 37.7
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 3.1e-30 136.7 77 76.6
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 2.9e-28 130.2 68 88.2
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 2.3e-25 120.6 248 32.7
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 4.3e-24 116.3 93 62.4
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.1e-23 114.0 64 79.7
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.4e-22 111.3 56 87.5
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 2.4e-22 110.5 137 48.9
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 1.1e-19 101.7 70 70.0
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 1.4e-19 101.3 118 49.2
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 8.7e-17 92.0 95 52.6
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 1.1e-14 85.1 48 77.1
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.1e-14 83.6 114 42.1
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.2e-13 81.6 59 55.9
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 7.8e-10 68.9 100 40.0
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 2.5e-08 63.9 77 44.2
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 5.6e-08 62.8 45 64.4


User provided reference genes

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