Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_13465 Corylus avellana HOM05D001206 ORTHO05D005935 9.0e-56 219.9 105 100.0
QL08p043357 Quercus lobata HOM05D001206 ORTHO05D005935 9.1e-32 140.2 75 89.3
CiPaw.03G196100 Carya illinoinensis HOM05D001206 ORTHO05D005935 2.1e-28 129.0 76 82.9
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.0e-27 126.7 94 67.0
Nn6g34432 Nelumbo nucifera HOM05D001206 ORTHO05D005935 1.0e-27 126.7 71 85.9
Atru.chr6.3565 Acer truncatum HOM05D001206 ORTHO05D005935 1.4e-27 126.3 74 82.4
FAN14G2675 Fragaria x ananassa HOM05D001206 ORTHO05D005935 1.4e-27 126.3 72 84.7
RcHm_v2.0_Chr2g0150631 Rosa chinensis HOM05D001206 ORTHO05D005935 1.8e-27 125.9 81 77.8
Potri.018G086350 Populus trichocarpa HOM05D001206 ORTHO05D005935 3.0e-27 125.2 75 80.0
MD09G1156700 Malus domestica HOM05D001206 ORTHO05D005935 5.2e-27 124.4 72 84.7
MD17G1143200 Malus domestica HOM05D001206 ORTHO05D005935 5.2e-27 124.4 72 84.7
Prupe.3G169900 Prunus persica HOM05D001206 ORTHO05D005935 5.2e-27 124.4 74 82.4
TAR629G1684 Trochodendron aralioides HOM05D001206 ORTHO05D005935 6.7e-27 124.0 74 83.8
arahy.Tifrunner.gnm1.ann1.BZT8G9 Arachis hypogaea HOM05D001206 ORTHO05D005935 1.1e-26 123.2 74 78.4
Cpa.g.sc139.29 Carica papaya HOM05D001206 ORTHO05D005935 1.1e-26 123.2 77 76.6
arahy.Tifrunner.gnm1.ann1.DXFN4R Arachis hypogaea HOM05D001206 ORTHO05D005935 1.5e-26 122.9 67 85.1
Ciclev10014821m.g Citrus clementina HOM05D001206 ORTHO05D005935 4.4e-26 121.3 71 84.5
Thecc.10G113900 Theobroma cacao HOM05D001206 ORTHO05D005935 4.4e-26 121.3 71 84.5
CANSAT64G1074 Cannabis sativa HOM05D001206 ORTHO05D005935 5.7e-26 120.9 72 83.3
TWI38G0487 Tripterygium wilfordii HOM05D001206 ORTHO05D005935 5.7e-26 120.9 71 80.3
Migut.H02113 Erythranthe guttata HOM05D001206 ORTHO05D005935 9.7e-26 120.2 73 76.7
Glyma.08G311400 Glycine max HOM05D001206 ORTHO05D005935 9.7e-26 120.2 75 74.7
VMungo0540G0597 Vigna mungo HOM05D001206 ORTHO05D005935 3.7e-25 118.2 72 77.8
Eucgr.K01190 Eucalyptus grandis HOM05D001206 ORTHO05D005935 4.8e-25 117.9 73 79.5
Hma1.2p1_3358F.1_g335550 Hydrangea macrophylla HOM05D001206 ORTHO05D005935 4.8e-25 117.9 71 80.3
PGR142G3322 Punica granatum HOM05D001206 ORTHO05D005935 6.3e-25 117.5 68 86.8
CSS0050390 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D005935 8.2e-25 117.1 72 79.2
GSVIVG01020788001 Vitis vinifera HOM05D001206 ORTHO05D005935 1.4e-24 116.3 74 77.0
vmacro12422 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 1.8e-24 115.9 74 75.7
vmacro12423 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 1.8e-24 115.9 74 75.7
PSO017G2524 Papaver somniferum HOM05D001206 ORTHO05D005935 2.4e-24 115.5 69 79.7
EL10Ac9g21024 Beta vulgaris HOM05D001206 ORTHO05D005935 3.1e-24 115.2 74 74.3
ECA233G3159 Erigeron canadensis HOM05D001206 ORTHO05D005935 3.1e-24 115.2 72 75.0
Gohir.A06G169500 Gossypium hirsutum HOM05D001206 ORTHO05D005935 3.1e-24 115.2 71 78.9
Gohir.D06G177200 Gossypium hirsutum HOM05D001206 ORTHO05D005935 3.1e-24 115.2 71 78.9
Gorai.N008100 Gossypium raimondii HOM05D001206 ORTHO05D005935 3.1e-24 115.2 71 78.9
CAN.G1191.9 Capsicum annuum HOM05D001206 ORTHO05D005935 4.1e-24 114.8 74 73.0
TPR.G13547 Trifolium pratense HOM05D001206 ORTHO05D005935 4.1e-24 114.8 71 77.5
ClCG09G022260 Citrullus lanatus HOM05D001206 ORTHO05D005935 5.3e-24 114.4 72 76.4
Medtr3g048950 Medicago truncatula HOM05D001206 ORTHO05D005935 5.3e-24 114.4 71 74.6
Peaxi162Scf00035g03126 Petunia axillaris HOM05D001206 ORTHO05D005935 5.3e-24 114.4 74 71.6
Phvul.006G036200 Phaseolus vulgaris HOM05D001206 ORTHO05D005935 7.0e-24 114.0 72 76.4
Rhsim06G0124000 Rhododendron simsii HOM05D001206 ORTHO05D005935 7.0e-24 114.0 71 76.1
MSTRG.12835 Avicennia marina HOM05D001206 ORTHO05D005935 1.6e-23 112.8 72 76.4
PSO478G1473 Papaver somniferum HOM05D001206 ORTHO05D005935 1.6e-23 112.8 69 78.3
Ca_14632_v3 Cicer arietinum L. HOM05D001206 ORTHO05D005935 2.7e-23 112.1 71 74.6
Ah.01g016080 Amaranthus hybridus HOM05D001206 ORTHO05D005935 3.5e-23 111.7 74 71.6
CARHR288520 Cardamine hirsuta HOM05D001206 ORTHO05D005935 4.5e-23 111.3 80 68.8
HanXRQChr13g0387351 Helianthus annuus HOM05D001206 ORTHO05D005935 4.5e-23 111.3 72 75.0
Manes.01G129100 Manihot esculenta HOM05D001206 ORTHO05D005935 4.5e-23 111.3 74 73.0
Psat5g186880 Pisum sativum HOM05D001206 ORTHO05D005935 4.5e-23 111.3 71 74.6
AL5G14200 Arabidopsis lyrata HOM05D001206 ORTHO05D005935 5.9e-23 110.9 69 78.3
AT3G25660 Arabidopsis thaliana HOM05D001206 ORTHO05D005935 5.9e-23 110.9 69 78.3
Cc05_g09120 Coffea canephora HOM05D001206 ORTHO05D005935 5.9e-23 110.9 72 76.4
Sp2g14920 Schrenkiella parvula HOM05D001206 ORTHO05D005935 5.9e-23 110.9 69 78.3
Lsat_1_v5_gn_8_31840 Lactuca sativa HOM05D001206 ORTHO05D005935 1.0e-22 110.2 72 75.0
Lalb_Chr15g0080441 Lupinus albus HOM05D001206 ORTHO05D005935 1.0e-22 110.2 74 74.3
Aqoxy3G00674 Aquilegia oxysepala HOM05D001206 ORTHO05D005935 1.3e-22 109.8 74 70.3
BcaB07g30635 Brassica carinata HOM05D001206 ORTHO05D005935 1.3e-22 109.8 69 76.8
Sabra18G0074600 Salix brachista HOM05D003301 ORTHO05D003665 1.3e-22 109.8 101 60.4
Actinidia11180 Actinidia chinensis HOM05D001206 ORTHO05D005935 1.7e-22 109.4 65 80.0
Aa31LG2G6650 Aethionema arabicum HOM05D001206 ORTHO05D005935 1.7e-22 109.4 69 78.3
CARHR260190 Cardamine hirsuta HOM05D001206 ORTHO05D005935 1.7e-22 109.4 69 76.8
Carub.0005s0348 Capsella rubella HOM05D001206 ORTHO05D005935 2.2e-22 109.0 69 76.8
MELO3C014457.2 Cucumis melo HOM05D001206 ORTHO05D005935 2.2e-22 109.0 78 71.8
Solyc10g007840.3 Solanum lycopersicum HOM05D001206 ORTHO05D005935 2.2e-22 109.0 72 70.8
Sopen10g003740 Solanum pennellii HOM05D001206 ORTHO05D005935 2.2e-22 109.0 72 70.8
ATR1096G083 Amborella trichopoda HOM05D001206 ORTHO05D005935 2.9e-22 108.6 70 74.3
A09p24920 Brassica napus HOM05D001206 ORTHO05D005935 2.9e-22 108.6 69 76.8
BraA09t38080Z Brassica rapa HOM05D001206 ORTHO05D005935 2.9e-22 108.6 69 76.8
SalBow7G4591 Salvia bowleyana HOM05D001206 ORTHO05D005935 2.9e-22 108.6 72 72.2
unitig_22.g6850 Utricularia gibba HOM05D001206 ORTHO05D005935 6.5e-22 107.5 69 73.9
AUR62004905 Chenopodium quinoa HOM05D001206 ORTHO05D005935 8.5e-22 107.1 69 73.9
Thhalv10012940m.g Eutrema salsugineum HOM05D001206 ORTHO05D005935 8.5e-22 107.1 69 75.4
Oeu032122.1 Olea europaea HOM05D001206 ORTHO05D005935 8.5e-22 107.1 65 81.5
BcaC04g21423 Brassica carinata HOM05D001206 ORTHO05D005935 1.9e-21 105.9 69 75.4
C09p31950 Brassica napus HOM05D001206 ORTHO05D005935 1.9e-21 105.9 69 75.4
BolC9t56049H Brassica oleracea HOM05D001206 ORTHO05D005935 1.9e-21 105.9 69 75.4
Gorai.N005800 Gossypium raimondii HOM05D001206 ORTHO05D005935 1.9e-21 105.9 71 76.1
Nitab4.5_0002027g0090 Nicotiana tabacum HOM05D001206 ORTHO05D005935 2.5e-21 105.5 83 63.9
AUR62032754 Chenopodium quinoa HOM05D001206 ORTHO05D005935 3.2e-21 105.1 69 72.5
CDE05G3011 Ceratophyllum demersum HOM05D001206 ORTHO05D005935 5.5e-21 104.4 73 69.9
THA.LOC104824040 Tarenaya hassleriana HOM05D001206 ORTHO05D005935 9.4e-21 103.6 69 69.6
THA.LOC104805240 Tarenaya hassleriana HOM05D001206 ORTHO05D005935 1.2e-20 103.2 68 73.5
BcaB07g32014 Brassica carinata HOM05D001206 ORTHO05D005935 1.0e-19 100.1 65 76.9
BcaB07g32016 Brassica carinata HOM05D001206 ORTHO05D005935 1.0e-19 100.1 65 76.9
BcaC05g25894 Brassica carinata HOM05D001206 ORTHO05D005935 1.0e-19 100.1 65 76.9
C05p18490 Brassica napus HOM05D001206 ORTHO05D005935 1.0e-19 100.1 65 76.9
BcaB06g27855 Brassica carinata HOM05D001206 ORTHO05D005935 8.8e-19 97.1 64 73.4
Mapoly0029s0077 Marchantia polymorpha HOM05D001206 ORTHO05D005935 2.0e-18 95.9 71 66.2
Actinidia12826 Actinidia chinensis HOM05D001206 ORTHO05D005935 2.6e-18 95.5 60 80.0
BcaC03g15127 Brassica carinata HOM05D001206 ORTHO05D005935 4.4e-18 94.7 63 74.6
BcaB07g30259 Brassica carinata HOM05D001206 ORTHO05D005935 5.7e-18 94.4 56 80.4
BcaC04g22258 Brassica carinata HOM05D001206 ORTHO05D005935 7.5e-18 94.0 61 77.0
AagrBONN_evm.TU.Sc2ySwM_368.1898 Anthoceros agrestis HOM05D001206 ORTHO05D005935 9.8e-18 93.6 67 68.7
SEGI_06909 Sequoiadendron giganteum HOM05D001206 ORTHO05D005935 9.8e-18 93.6 65 66.2
HPP92_002350 Vanilla planifolia HOM05D001206 ORTHO05D005935 9.8e-18 93.6 66 69.7
Pp3c16_16670 Physcomitrium patens HOM05D001206 ORTHO05D005935 1.7e-17 92.8 69 65.2
BolC3t19603H Brassica oleracea HOM05D000152 ORTHO05D000609 2.4e-16 89.0 62 72.6
Pp3c27_1950 Physcomitrium patens HOM05D001206 ORTHO05D005935 3.1e-16 88.6 69 63.8
BcaC01g01682 Brassica carinata HOM05D007004 ORTHO05D009040 4.1e-16 88.2 75 61.3
SGA_v2.0_scaffold4G02113 Striga asiatica HOM05D001206 ORTHO05D005935 1.6e-15 86.3 75 57.3
DCAR_013291 Daucus carota HOM05D001206 ORTHO05D005935 8.5e-14 80.5 70 61.4
CBR_g12438 Chara braunii HOM05D001206 ORTHO05D005935 1.1e-13 80.1 58 69.0
MBI15_g31580_MAGBIO Magnolia biondii HOM05D001433 ORTHO05D011977 5.5e-13 77.8 47 80.9
Hma1.2p1_0178F.1_g078230 Hydrangea macrophylla HOM05D001206 ORTHO05D005935 1.2e-12 76.6 59 67.8
Lj1A587G24 Lonicera japonica HOM05D001206 ORTHO05D005935 2.1e-12 75.9 48 79.2
FAN02G0831 Fragaria x ananassa HOM05D001206 ORTHO05D005935 2.7e-12 75.5 68 58.8
Lj6g0018418 Lotus japonicus HOM05D001206 ORTHO05D005935 6.1e-12 74.3 45 82.2
Hund07738 Selenicereus undatus HOM05D001206 ORTHO05D005935 6.1e-12 74.3 48 75.0
CSS0014076 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D005935 1.0e-11 73.6 47 78.7
MBI05_g35447_MAGBIO Magnolia biondii HOM05D001206 ORTHO05D005935 4.0e-11 71.6 45 77.8
MBI08_g05402_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.2e-10 70.1 47 74.5
Cre10.g439400 Chlamydomonas reinhardtii HOM05D001206 ORTHO05D005935 2.0e-10 69.3 57 64.9
arahy.Tifrunner.gnm1.ann1.53RDS0 Arachis hypogaea HOM05D001206 ORTHO05D005935 1.3e-09 66.6 45 62.2
Nitab4.5_0001402g0110 Nicotiana tabacum HOM05D001206 ORTHO05D005935 2.8e-09 65.5 45 71.1
Nitab4.5_0001402g0160 Nicotiana tabacum HOM05D001206 ORTHO05D005935 2.8e-09 65.5 45 71.1
HanXRQChr04g0113591 Helianthus annuus HOM05D001206 ORTHO05D015096 4.9e-09 64.7 45 71.1
Gorai.010G208200 Gossypium raimondii HOM05D001206 ORTHO05D005935 2.4e-08 62.4 46 71.7
Pp3s32_288 Physcomitrium patens HOM05D001206 ORTHO05D005935 2.4e-08 62.4 58 53.4
PGSC0003DMG402021239 Solanum tuberosum HOM05D001206 ORTHO05D005935 3.1e-08 62.0 46 67.4
MBI04_g41030_MAGBIO Magnolia biondii HOM05D000078 ORTHO05D000025 2.7e-07 58.9 33 84.8
PRCOL_00000262 Prasinoderma coloniale HOM05D001206 ORTHO05D005935 1.0e-06 57.0 57 52.6
SMO118G0181 Selaginella moellendorffii HOM05D001206 ORTHO05D005935 3.8e-06 55.1 45 62.2


User provided reference genes

Program Settings