Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 0.0e+00 1386.3 802 100.0
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 0.0e+00 1230.3 900 82.8
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 7.9e-261 904.0 846 62.3
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 8.0e-237 824.3 899 58.2
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.2e-203 714.1 749 56.1
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 2.5e-198 696.4 822 54.7
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 1.9e-190 670.2 692 55.9
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 2.1e-184 650.2 751 53.3
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 3.9e-183 646.0 762 55.0
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 5.1e-183 645.6 769 56.2
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 1.5e-182 644.0 752 52.3
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 7.3e-182 641.7 750 52.0
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 7.3e-182 641.7 752 52.1
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 1.0e-175 621.3 766 52.2
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 1.3e-175 620.9 743 53.6
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 3.9e-175 619.4 770 51.9
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 9.0e-172 608.2 699 52.4
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.5e-171 607.4 722 48.2
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 2.6e-171 606.7 724 51.2
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 9.3e-169 598.2 729 49.4
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 2.7e-168 596.7 711 52.0
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 4.6e-168 595.9 748 50.3
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.1e-166 591.3 722 47.1
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 5.7e-166 589.0 749 50.7
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 7.4e-166 588.6 689 49.8
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 6.2e-165 585.5 759 49.1
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 1.8e-164 583.9 769 49.2
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 5.3e-164 582.4 779 48.0
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 5.3e-164 582.4 814 45.7
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 2.2e-162 577.0 694 50.3
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 2.9e-162 576.6 751 50.2
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 6.5e-162 575.5 760 49.1
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 9.3e-161 571.6 803 46.9
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 6.1e-160 568.9 770 47.8
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 1.5e-158 564.3 768 48.7
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 4.3e-158 562.8 730 47.3
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 7.4e-158 562.0 725 49.8
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 7.4e-158 562.0 805 48.3
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 1.3e-157 561.2 755 46.6
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 1.6e-157 560.8 762 49.9
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 1.8e-156 557.4 658 52.7
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 1.8e-156 557.4 710 46.3
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 4.5e-155 552.7 774 47.9
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 6.5e-154 548.9 734 48.4
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 2.1e-152 543.9 800 49.1
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 1.1e-150 538.1 746 48.8
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 6.9e-148 528.9 797 47.4
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 1.5e-147 527.7 831 44.8
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 7.7e-147 525.4 764 45.7
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 1.3e-146 524.6 731 47.1
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 7.2e-145 518.8 793 45.5
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 1.8e-143 514.2 689 44.6
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 3.3e-142 510.0 730 46.3
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 3.7e-141 506.5 815 46.0
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 3.1e-140 503.4 736 45.5
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 3.1e-140 503.4 745 45.9
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 3.6e-136 490.0 721 42.4
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 6.1e-136 489.2 734 45.2
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 8.0e-136 488.8 740 45.1
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 8.2e-133 478.8 731 45.8
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.4e-132 478.0 735 43.9
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 2.7e-128 463.8 707 41.6
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 3.6e-128 463.4 690 41.3
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 2.3e-127 460.7 903 39.0
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 1.5e-126 458.0 771 45.8
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 5.7e-126 456.1 606 44.2
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 9.8e-126 455.3 734 40.5
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 3.7e-125 453.4 727 41.1
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.8e-124 451.1 710 45.6
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 2.4e-124 450.7 746 39.8
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 7.0e-124 449.1 768 42.2
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 2.7e-123 447.2 736 43.8
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 4.5e-123 446.4 704 41.1
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 5.0e-122 443.0 740 39.5
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 1.1e-121 441.8 691 41.0
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 8.0e-120 435.6 725 39.0
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 8.8e-119 432.2 684 41.1
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 1.3e-117 428.3 736 40.9
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 1.4e-116 424.9 748 41.0
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 4.1e-116 423.3 735 42.7
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 1.6e-115 421.4 691 41.0
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 2.7e-115 420.6 713 41.4
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 1.3e-114 418.3 691 40.8
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 1.7e-114 417.9 731 38.9
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 2.9e-114 417.2 691 40.7
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 5.0e-114 416.4 741 41.0
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 1.9e-113 414.5 688 40.3
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 2.5e-113 414.1 703 38.3
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 2.1e-112 411.0 756 36.8
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 5.2e-111 406.4 736 36.7
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 8.9e-111 405.6 742 34.8
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 8.9e-111 405.6 849 36.0
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 3.7e-109 400.2 679 38.7
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 7.3e-105 386.0 704 38.6
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 9.5e-105 385.6 671 38.6
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 9.5e-105 385.6 681 37.6
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 1.2e-102 378.6 588 45.6
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 9.8e-102 375.6 695 38.3
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 7.0e-100 369.4 810 34.6
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 1.9e-97 361.3 859 32.4
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 9.5e-97 359.0 839 34.4
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 4.7e-96 356.7 730 35.5
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 4.0e-95 353.6 717 38.2
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 6.4e-93 346.3 703 36.1
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 1.0e-90 339.0 766 34.7
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 3.0e-90 337.4 699 37.1
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 1.6e-88 331.6 731 38.6
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 6.2e-88 329.7 469 47.5
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.8e-87 328.2 303 57.1
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 1.8e-87 328.2 920 29.9
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 6.8e-87 326.2 689 34.5
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 6.2e-80 303.1 668 36.1
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 5.8e-78 296.6 277 54.5
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 1.3e-74 285.4 567 38.4
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 6.6e-74 283.1 741 33.9
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 6.2e-72 276.6 281 58.7
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 2.6e-70 271.2 272 54.8
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.6e-67 261.9 689 30.0
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 7.9e-67 259.6 737 30.5
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 4.0e-55 220.7 381 44.1
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 1.3e-53 215.7 177 58.2
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 3.7e-48 197.6 378 38.1
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 2.6e-46 191.4 739 26.0
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 9.7e-41 172.9 216 43.1
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 3.4e-38 164.5 145 61.4
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 4.5e-38 164.1 150 59.3
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 2.2e-37 161.8 198 49.0
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 2.5e-33 148.3 153 52.3
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 2.5e-28 131.7 781 24.2
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 9.4e-28 129.8 512 30.3
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 1.3e-24 119.4 269 34.2
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 4.8e-24 117.5 291 32.0
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 8.2e-24 116.7 291 29.9
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 4.5e-22 110.9 228 33.3
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 3.6e-19 101.3 170 37.1
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 6.3e-16 90.5 220 31.4
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 5.0e-13 80.9 75 57.3
CAN.G97.26 Capsicum annuum HOM05D000252 ORTHO05D006388 1.7e-08 65.9 63 52.4
Sabra10G0125200 Salix brachista HOM05D000508 ORTHO05D000371 1.8e-07 62.4 58 55.2
THA.LOC104802250 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 5.4e-07 60.8 169 32.0
FvH4_4g03480 Fragaria vesca HOM05D014995 ORTHO05D029569 7.0e-07 60.5 64 54.7
FAN12G1500 Fragaria x ananassa HOM05D005245 ORTHO05D029569 7.0e-07 60.5 64 54.7


User provided reference genes

Program Settings