Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 7.6e-108 394.0 228 100.0
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 4.6e-97 358.2 228 93.0
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 1.0e-64 250.8 233 71.7
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 3.2e-58 229.2 239 66.5
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 2.0e-44 183.3 242 50.4
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 2.0e-44 183.3 242 50.4
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 2.5e-42 176.4 247 45.7
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 1.6e-41 173.7 256 53.5
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 6.1e-41 171.8 243 46.9
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 1.4e-40 170.6 239 46.9
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 1.4e-40 170.6 264 52.3
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 2.3e-40 169.9 276 43.8
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 6.8e-40 168.3 268 42.9
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 1.2e-39 167.5 245 44.5
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 1.2e-39 167.5 262 42.7
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 3.4e-39 166.0 247 48.6
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 4.4e-39 165.6 245 44.9
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 4.4e-39 165.6 240 44.2
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 5.7e-39 165.2 234 51.3
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 1.7e-38 163.7 251 44.6
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 2.2e-38 163.3 259 53.3
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.2e-38 163.3 247 45.7
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 4.9e-38 162.2 231 50.6
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 4.9e-38 162.2 251 49.4
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 1.1e-37 161.0 225 51.1
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 1.1e-37 161.0 239 45.6
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 1.1e-37 161.0 228 45.2
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 2.4e-37 159.8 240 45.4
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 3.1e-37 159.5 236 48.7
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 4.1e-37 159.1 245 47.8
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 7.0e-37 158.3 241 49.4
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 1.6e-36 157.1 232 44.8
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 2.0e-36 156.8 229 48.0
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 5.9e-36 155.2 230 45.2
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 5.9e-36 155.2 245 42.0
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 1.0e-35 154.5 212 45.8
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.7e-35 153.7 231 45.0
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 2.9e-35 152.9 241 51.5
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 6.6e-35 151.8 227 44.9
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 6.6e-35 151.8 235 46.0
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 6.6e-35 151.8 224 46.0
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 8.6e-35 151.4 243 45.3
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 1.5e-34 150.6 223 52.9
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 1.5e-34 150.6 246 43.5
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 4.2e-34 149.1 234 42.7
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 4.2e-34 149.1 233 45.5
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 5.5e-34 148.7 232 48.7
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 5.5e-34 148.7 247 50.6
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 9.5e-34 147.9 169 49.7
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 1.2e-33 147.5 253 42.3
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 1.2e-33 147.5 235 45.1
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 1.6e-33 147.1 268 42.9
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 2.1e-33 146.7 268 42.5
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 2.8e-33 146.4 90 75.6
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 3.6e-33 146.0 100 68.0
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 4.7e-33 145.6 237 40.5
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 6.1e-33 145.2 236 50.0
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 8.0e-33 144.8 234 44.0
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 1.8e-32 143.7 211 46.0
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 1.8e-32 143.7 245 43.7
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 2.3e-32 143.3 237 42.6
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 5.2e-32 142.1 222 43.2
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 5.2e-32 142.1 237 48.9
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 5.2e-32 142.1 83 77.1
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 1.2e-31 141.0 227 43.2
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 2.0e-31 140.2 246 50.0
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 3.4e-31 139.4 100 68.0
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 7.5e-31 138.3 236 45.3
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 9.8e-31 137.9 245 48.6
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 1.7e-30 137.1 88 71.6
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 1.7e-30 137.1 235 40.9
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.9e-30 136.3 81 76.5
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.9e-30 136.3 246 44.3
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 3.7e-30 136.0 223 42.6
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 3.7e-30 136.0 213 43.2
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 3.7e-30 136.0 84 73.8
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 4.9e-30 135.6 222 42.3
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 4.9e-30 135.6 240 38.8
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 4.9e-30 135.6 240 42.9
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 6.3e-30 135.2 233 44.2
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 6.3e-30 135.2 232 40.5
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 1.4e-29 134.0 91 73.6
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 2.4e-29 133.3 243 43.2
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 3.2e-29 132.9 243 42.0
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 5.4e-29 132.1 226 40.3
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 9.2e-29 131.3 97 67.0
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 1.2e-28 131.0 86 68.6
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 2.7e-28 129.8 79 75.9
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 3.5e-28 129.4 223 39.5
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 5.9e-28 128.6 218 40.4
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 5.9e-28 128.6 221 40.7
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 5.9e-28 128.6 221 40.7
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 5.9e-28 128.6 254 48.0
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 5.9e-28 128.6 229 43.7
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 7.8e-28 128.3 93 69.9
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 7.8e-28 128.3 275 44.0
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 1.0e-27 127.9 222 41.4
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 1.0e-27 127.9 227 36.6
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 1.7e-27 127.1 223 39.0
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 2.9e-27 126.3 233 38.2
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 3.9e-27 125.9 221 39.8
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 3.9e-27 125.9 222 39.6
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 1.1e-26 124.4 222 42.3
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 1.5e-26 124.0 231 38.5
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 4.3e-26 122.5 221 38.9
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 7.3e-26 121.7 227 44.9
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 9.5e-26 121.3 227 44.1
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 1.2e-25 120.9 227 44.9
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 1.2e-25 120.9 90 63.3
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 1.6e-25 120.6 117 57.3
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 3.6e-25 119.4 229 42.4
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 8.0e-25 118.2 68 76.5
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 8.0e-25 118.2 118 54.2
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.0e-24 117.9 222 39.6
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 1.0e-24 117.9 114 56.1
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 1.8e-24 117.1 224 36.6
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 3.1e-24 116.3 224 40.2
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 5.2e-24 115.5 118 53.4
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 1.5e-23 114.0 188 37.8
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 2.0e-23 113.6 111 50.5
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 4.4e-23 112.5 227 39.6
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 5.8e-23 112.1 236 34.3
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 9.8e-23 111.3 86 64.0
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 1.3e-22 110.9 91 57.1
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 1.3e-22 110.9 174 42.5
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 1.7e-22 110.5 88 62.5
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 5.4e-21 105.5 217 34.1
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 5.4e-21 105.5 217 34.1
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 1.6e-20 104.0 125 44.8
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 2.7e-20 103.2 64 73.4
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 1.0e-19 101.3 124 46.0
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 1.7e-19 100.5 221 36.2
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 3.0e-19 99.8 226 33.6
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 3.0e-19 99.8 226 33.6
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 3.0e-19 99.8 77 59.7
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 1.5e-18 97.4 77 57.1
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 4.7e-17 92.4 184 36.4
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 8.1e-17 91.7 78 57.7
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 3.7e-14 82.8 191 38.7
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 2.8e-09 66.6 217 29.5


User provided reference genes

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