Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 1.5e-289 998.8 520 100.0
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 3.8e-264 914.4 509 92.5
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 3.5e-217 758.4 512 73.6
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 2.4e-197 692.6 513 68.8
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 1.0e-176 624.0 524 61.5
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 3.0e-176 622.5 527 61.1
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.1e-174 616.3 512 60.7
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 2.1e-174 616.3 512 60.7
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 2.8e-174 615.9 520 60.6
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 1.1e-173 614.0 513 60.6
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 6.9e-173 611.3 512 60.9
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 9.0e-173 610.9 513 60.8
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 9.0e-173 610.9 512 60.9
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 9.0e-173 610.9 512 62.1
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 1.5e-172 610.1 528 60.8
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 7.6e-172 607.8 511 61.4
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.7e-171 606.7 520 60.0
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 1.1e-170 604.0 512 59.6
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 7.1e-170 601.3 506 60.7
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 2.1e-169 599.7 516 60.1
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 7.9e-169 597.8 514 59.9
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 3.9e-168 595.5 510 60.4
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 8.7e-168 594.3 514 59.7
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 4.3e-167 592.0 525 57.9
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 1.3e-166 590.5 512 62.5
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 8.2e-166 587.8 519 58.4
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 6.9e-165 584.7 511 57.5
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 1.0e-163 580.9 536 56.3
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 2.2e-163 579.7 538 58.0
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 2.2e-163 579.7 538 58.0
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 3.2e-162 575.9 519 57.0
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.4e-157 559.7 541 55.3
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 2.6e-156 556.2 521 56.0
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.0e-155 554.3 543 54.7
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 6.5e-155 551.6 547 55.8
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.1e-154 550.8 481 59.5
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 7.2e-154 548.1 528 55.7
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 3.6e-153 545.8 513 54.6
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 5.7e-151 538.5 507 55.4
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 2.6e-148 529.6 510 53.9
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 3.4e-148 529.3 512 53.9
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 4.5e-148 528.9 506 55.5
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 2.9e-147 526.2 545 54.9
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 8.5e-147 524.6 512 52.5
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 1.9e-146 523.5 506 53.6
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 6.1e-145 518.5 513 54.0
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 3.0e-144 516.2 509 53.4
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 1.5e-143 513.8 509 54.2
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 2.0e-143 513.5 512 52.3
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 2.6e-143 513.1 535 51.6
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 2.2e-142 510.0 524 51.5
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 2.2e-142 510.0 522 53.6
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 2.2e-142 510.0 516 53.9
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 2.8e-142 509.6 518 53.3
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 3.7e-142 509.2 509 54.0
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 3.7e-142 509.2 514 52.9
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 5.3e-141 505.4 509 54.0
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 9.1e-141 504.6 510 50.4
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 7.7e-140 501.5 509 53.0
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 3.8e-139 499.2 534 51.5
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 4.2e-138 495.7 514 50.6
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 1.2e-137 494.2 530 50.6
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 2.7e-137 493.0 513 51.7
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 1.0e-136 491.1 518 51.9
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 5.2e-136 488.8 518 51.7
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 2.6e-135 486.5 532 49.6
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 1.7e-134 483.8 518 50.8
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 8.2e-134 481.5 520 50.6
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 5.9e-132 475.3 512 49.4
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 1.0e-131 474.6 502 48.0
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.1e-130 471.1 520 53.1
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 1.1e-130 471.1 518 49.8
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 1.6e-129 467.2 511 46.4
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 1.6e-129 467.2 518 49.2
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 4.7e-129 465.7 510 47.1
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 4.7e-129 465.7 510 47.1
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 4.7e-129 465.7 561 45.8
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 1.8e-128 463.8 511 46.8
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 8.8e-128 461.5 511 46.8
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 1.2e-127 461.1 510 46.5
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.5e-127 460.7 509 49.1
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 1.5e-127 460.7 499 49.1
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 4.4e-127 459.1 518 45.8
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 9.8e-127 458.0 516 45.3
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 1.3e-126 457.6 513 46.4
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 3.7e-126 456.1 514 47.5
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 1.8e-125 453.8 507 46.9
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 1.8e-125 453.8 520 45.0
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 9.1e-125 451.4 505 46.7
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 2.0e-124 450.3 510 45.7
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 2.0e-124 450.3 511 46.4
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 2.0e-124 450.3 519 45.9
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 2.7e-124 449.9 510 45.7
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 4.5e-124 449.1 511 49.1
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 7.7e-124 448.4 511 46.2
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 3.8e-123 446.0 511 48.3
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 1.9e-122 443.7 497 47.1
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 8.0e-121 438.3 511 46.8
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 4.0e-120 436.0 514 45.1
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 3.8e-115 419.5 528 42.2
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 2.1e-113 413.7 514 44.6
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.4e-112 411.0 480 47.3
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.0e-112 409.8 510 44.9
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 1.2e-111 407.9 536 42.0
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 7.5e-111 405.2 509 46.4
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 3.5e-108 396.4 520 42.9
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 2.1e-105 387.1 514 42.2
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 6.8e-104 382.1 502 45.6
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 2.2e-102 377.1 500 45.2
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 2.9e-102 376.7 467 44.3
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 2.4e-101 373.6 526 40.5
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 3.2e-101 373.2 529 41.4
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 4.6e-100 369.4 517 42.0
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 4.6e-100 369.4 522 40.2
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.5e-98 361.7 510 41.8
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 3.6e-97 359.8 415 46.3
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 5.4e-85 319.3 481 41.0
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 7.1e-85 318.9 520 37.9
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.9e-82 310.8 493 36.7
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.5e-82 310.5 493 37.3
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 2.2e-78 297.4 528 36.7
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-77 295.0 511 36.6
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.0e-68 262.7 463 36.5
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.1e-67 259.6 463 36.1
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 2.4e-64 250.8 495 33.1
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 7.1e-61 239.2 511 31.7
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-53 215.3 459 32.9
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-53 215.3 459 32.9
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 7.1e-53 212.6 147 69.4
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.1e-48 196.8 373 34.6
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 9.0e-48 195.7 166 58.4
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 2.6e-47 194.1 271 43.2
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 1.6e-44 184.9 130 70.0
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 1.1e-42 178.7 308 36.7
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 9.7e-42 175.6 466 33.0
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 2.4e-40 171.0 506 28.9
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.4e-37 161.8 495 26.1
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 3.2e-37 160.6 487 25.7
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 1.8e-35 154.8 398 33.4
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 2.2e-30 137.9 459 27.5
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 1.5e-21 108.6 498 22.7
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 7.2e-21 106.3 99 54.5
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 7.5e-18 96.3 454 21.1
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 7.7e-15 86.3 135 38.5
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.7e-14 85.1 388 22.9
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 6.5e-14 83.2 137 33.6
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 9.4e-13 79.3 51 68.6
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 6.1e-12 76.6 191 29.3
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.0e-11 75.9 301 26.2
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.0e-11 74.3 86 48.8
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 1.5e-10 72.0 74 39.2
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 1.3e-09 68.9 41 68.3
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 2.2e-09 68.2 89 36.0
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 2.8e-09 67.8 41 70.7
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 8.3e-09 66.2 161 26.7


User provided reference genes

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