Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 9.3e-43 176.4 85 100.0
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 1.0e-41 172.9 85 97.6
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 7.3e-40 166.8 85 94.1
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 2.9e-28 128.3 86 70.9
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 8.4e-28 126.7 85 70.6
QL08p037147 Quercus lobata HOM05D004838 ORTHO05D005373 6.7e-25 117.1 87 70.1
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 5.3e-22 107.5 85 61.2
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 6.9e-22 107.1 84 60.7
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 1.2e-21 106.3 85 61.2
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 1.5e-21 105.9 85 62.4
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 2.6e-21 105.1 88 55.7
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 7.6e-21 103.6 96 52.1
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 7.6e-21 103.6 85 60.0
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 1.3e-20 102.8 87 55.2
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.7e-20 102.4 89 53.9
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 1.7e-20 102.4 85 55.3
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.7e-20 102.4 88 54.5
TWI36G0547 Tripterygium wilfordii HOM05D004838 ORTHO05D005373 2.2e-20 102.1 85 57.6
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 6.5e-20 100.5 86 61.6
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 8.4e-20 100.1 87 57.5
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.1e-19 99.8 84 58.3
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 1.4e-19 99.4 86 54.7
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 1.4e-19 99.4 85 57.6
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 2.5e-19 98.6 88 54.5
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 4.2e-19 97.8 85 57.6
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 9.3e-19 96.7 85 52.9
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 9.3e-19 96.7 87 56.3
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 1.2e-18 96.3 86 53.5
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 4.6e-18 94.4 86 52.3
MD09G1096600 Malus domestica HOM05D004838 ORTHO05D005373 4.6e-18 94.4 87 58.6
ECA246G4438 Erigeron canadensis HOM05D004838 ORTHO05D005373 6.0e-18 94.0 82 51.2
Nn1g03874 Nelumbo nucifera HOM05D004838 ORTHO05D005373 7.9e-18 93.6 86 54.7
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 7.9e-18 93.6 86 57.0
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 1.0e-17 93.2 85 50.6
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 1.0e-17 93.2 85 54.1
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 1.3e-17 92.8 86 55.8
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 1.3e-17 92.8 85 49.4
Dinv13826 Davidia involucrata HOM05D004838 ORTHO05D005373 1.8e-17 92.4 81 55.6
TAR629G1266 Trochodendron aralioides HOM05D004838 ORTHO05D005373 1.8e-17 92.4 85 52.9
MBI02_g13229_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 3.0e-17 91.7 85 50.6
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 3.0e-17 91.7 86 47.7
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 3.9e-17 91.3 85 55.3
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 8.7e-17 90.1 86 46.5
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 8.7e-17 90.1 86 46.5
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 1.5e-16 89.4 88 54.5
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 2.5e-16 88.6 84 51.2
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 7.4e-16 87.0 85 47.1
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 2.2e-15 85.5 83 47.0
Potri.019G116300 Populus trichocarpa HOM05D004838 ORTHO05D005373 2.8e-15 85.1 85 51.8
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 3.7e-15 84.7 83 53.0
Sabra19G0117300 Salix brachista HOM05D004838 ORTHO05D005373 4.8e-15 84.3 85 50.6
Sabra19G0136400 Salix brachista HOM05D004838 ORTHO05D005373 4.8e-15 84.3 85 50.6
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 6.3e-15 84.0 86 48.8
CSS0036889 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.1e-14 83.2 88 47.7
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 1.4e-14 82.8 85 45.9
SGA_v2.0_scaffold70G23461 Striga asiatica HOM05D004838 ORTHO05D005373 1.4e-14 82.8 82 51.2
CSS0025457 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.8e-14 82.4 89 48.3
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 4.1e-14 81.3 81 51.9
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 5.3e-14 80.9 86 53.5
ECA246G0551 Erigeron canadensis HOM05D004838 ORTHO05D005373 9.0e-14 80.1 85 50.6
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 1.2e-13 79.7 85 44.7
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 3.4e-13 78.2 85 42.4
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 5.9e-13 77.4 85 47.1
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 7.7e-13 77.0 88 53.4
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 7.7e-13 77.0 86 51.2
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 1.0e-12 76.6 86 51.2
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 1.0e-12 76.6 85 44.7
CSS0031952 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.3e-12 76.3 89 44.9
CSS0009600 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.7e-12 75.9 91 44.0
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 1.7e-12 75.9 86 51.2
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 1.7e-12 75.9 85 41.2
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 2.2e-12 75.5 84 46.4
CSS0040113 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 2.9e-12 75.1 92 42.4
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 5.0e-12 74.3 85 48.2
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 5.0e-12 74.3 85 48.2
Lsat_1_v5_gn_3_40141 Lactuca sativa HOM05D004838 ORTHO05D005373 1.4e-11 72.8 84 44.0
CDE10G0022 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 3.2e-11 71.6 83 41.0
Sc21g0002530 Simmondsia chinensis HOM05D004838 ORTHO05D005373 4.2e-11 71.2 85 49.4
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 7.2e-11 70.5 85 45.9
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 9.4e-11 70.1 86 47.7
RcHm_v2.0_Chr2g0161551 Rosa chinensis HOM05D004838 ORTHO05D005373 3.6e-10 68.2 86 46.5
Sc21g0002480 Simmondsia chinensis HOM05D004838 ORTHO05D005373 6.1e-10 67.4 85 44.7
ECA246G0483 Erigeron canadensis HOM05D004838 ORTHO05D005373 7.9e-10 67.0 86 43.0
Migut.H01016 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.4e-09 66.2 91 44.0
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 1.8e-09 65.9 86 40.7
Sc21g0002490 Simmondsia chinensis HOM05D004838 ORTHO05D005373 1.8e-09 65.9 86 45.3
Migut.H01015 Erythranthe guttata HOM05D004838 ORTHO05D005373 2.3e-09 65.5 86 45.3
Sabra13G0119300 Salix brachista HOM05D004838 ORTHO05D005373 2.3e-09 65.5 80 48.8
ATR0852G001 Amborella trichopoda HOM05D004838 ORTHO05D005373 3.9e-09 64.7 87 43.7
TAR627G0102 Trochodendron aralioides HOM05D004838 ORTHO05D005373 3.9e-09 64.7 67 46.3
ClCG02G017310 Citrullus lanatus HOM05D031423 ORTHO05D005373 6.7e-09 63.9 87 43.7
ECA246G1879 Erigeron canadensis HOM05D000214 ORTHO05D000131 6.7e-09 63.9 83 44.6
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 6.7e-09 63.9 86 46.5
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 6.7e-09 63.9 86 46.5
Haze_09397 Corylus avellana HOM05D004838 ORTHO05D005373 1.5e-08 62.8 46 63.0
ECA246G2857 Erigeron canadensis HOM05D004838 ORTHO05D005373 1.5e-08 62.8 86 45.3
Nn2g11248 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.9e-08 62.4 85 45.9
MELO3C013538.2 Cucumis melo HOM05D031423 ORTHO05D034979 3.3e-08 61.6 89 44.9
Thecc.06G200800 Theobroma cacao HOM05D004838 ORTHO05D005373 3.3e-08 61.6 85 42.4
Actinidia08019 Actinidia chinensis HOM05D004838 ORTHO05D005373 7.4e-08 60.5 86 41.9
Nitab4.5_0005244g0070 Nicotiana tabacum HOM05D004838 ORTHO05D005373 7.4e-08 60.5 85 38.8
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 9.7e-08 60.1 86 37.2
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 1.3e-07 59.7 90 43.3
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 1.3e-07 59.7 90 43.3
Lsat_1_v5_gn_3_40020 Lactuca sativa HOM05D004838 ORTHO05D005373 1.7e-07 59.3 74 40.5
BcaNung01586 Brassica carinata HOM05D004838 ORTHO05D005373 2.2e-07 58.9 89 39.3
BcaB03g12560 Brassica carinata HOM05D004838 ORTHO05D005373 2.8e-07 58.5 90 41.1
CARHR235950 Cardamine hirsuta HOM05D004838 ORTHO05D005373 2.8e-07 58.5 87 42.5
Sp7g26200 Schrenkiella parvula HOM05D004838 ORTHO05D005373 2.8e-07 58.5 85 41.2
BcaC07g38318 Brassica carinata HOM05D004838 ORTHO05D005373 3.7e-07 58.2 85 41.2
BolC8t48742H Brassica oleracea HOM05D004838 ORTHO05D005373 3.7e-07 58.2 85 41.2
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 3.7e-07 58.2 89 42.7
QL05p081093 Quercus lobata HOM05D004838 ORTHO05D005373 3.7e-07 58.2 84 41.7
Sc06g0009320 Simmondsia chinensis HOM05D004838 ORTHO05D005373 4.8e-07 57.8 85 42.4
Thhalv10026689m.g Eutrema salsugineum HOM05D004838 ORTHO05D005373 6.3e-07 57.4 85 41.2
Lsat_1_v5_gn_3_40361 Lactuca sativa HOM05D004838 ORTHO05D005373 8.2e-07 57.0 85 38.8
Sed0022545 Sechium edule HOM05D004838 ORTHO05D005373 8.2e-07 57.0 88 46.6
THA.LOC104804066 Tarenaya hassleriana HOM05D004838 ORTHO05D005373 8.2e-07 57.0 85 41.2
Migut.H01018 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.1e-06 56.6 88 38.6
CDE02G2086 Ceratophyllum demersum HOM05D001554 ORTHO05D001481 2.4e-06 55.5 83 36.1
Gohir.D05G169000 Gossypium hirsutum HOM05D004838 ORTHO05D005373 2.4e-06 55.5 85 37.6
Lalb_Chr22g0356341 Lupinus albus HOM05D004838 ORTHO05D005373 2.4e-06 55.5 85 37.6
Gorai.009G174200 Gossypium raimondii HOM05D004838 ORTHO05D005373 3.1e-06 55.1 85 40.0
Sc21g0002500 Simmondsia chinensis HOM05D004838 ORTHO05D005373 3.1e-06 55.1 83 43.4
CDE05G2085 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 4.1e-06 54.7 78 35.9
ECA246G1803 Erigeron canadensis HOM05D004838 ORTHO05D005373 4.1e-06 54.7 91 35.2
A08p20180 Brassica napus HOM05D004838 ORTHO05D005373 5.3e-06 54.3 85 38.8
BraA08t33978Z Brassica rapa HOM05D004838 ORTHO05D005373 5.3e-06 54.3 85 38.8
MBI18_g19832_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 5.3e-06 54.3 81 39.5
Potri.011G042000 Populus trichocarpa HOM05D038532 ORTHO05D005373 5.3e-06 54.3 84 34.5
Sc21g0002520 Simmondsia chinensis HOM05D004838 ORTHO05D005373 9.1e-06 53.5 83 41.0


User provided reference genes

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