Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_13046 Corylus avellana HOM05D008701 ORTHO05D010238 1.7e-132 476.1 248 100.0
Cfa014502 Carpinus fangiana HOM05D008701 ORTHO05D010238 2.0e-117 426.0 252 91.3
Cfa018756 Carpinus fangiana HOM05D008701 ORTHO05D010238 1.2e-66 257.3 160 87.5
CiPaw.03G167300 Carya illinoinensis HOM05D008701 ORTHO05D010238 1.6e-42 177.2 209 53.1
QL08p036307 Quercus lobata HOM05D008701 ORTHO05D010238 2.1e-42 176.8 242 51.7
Prupe.3G227700 Prunus persica HOM05D008701 ORTHO05D010238 4.2e-27 125.9 268 41.8
CiPaw.04G121600 Carya illinoinensis HOM05D008701 ORTHO05D010238 2.3e-25 120.2 246 44.7
Potri.013G149300 Populus trichocarpa HOM05D008701 ORTHO05D010238 8.7e-25 118.2 298 34.6
RcHm_v2.0_Chr2g0161211 Rosa chinensis HOM05D008701 ORTHO05D010238 3.3e-24 116.3 282 38.7
FAN02G3791 Fragaria x ananassa HOM05D008701 ORTHO05D010238 2.8e-23 113.2 269 36.8
FAN09G1417 Fragaria x ananassa HOM05D008701 ORTHO05D010238 3.7e-23 112.8 269 37.5
FvH4_6g44330 Fragaria vesca HOM05D008701 ORTHO05D010238 6.3e-23 112.1 276 37.0
FAN14G1396 Fragaria x ananassa HOM05D008701 ORTHO05D010238 6.3e-23 112.1 276 37.0
COL.COLO4_06754 Corchorus olitorius HOM05D008701 ORTHO05D010238 1.1e-22 111.3 272 34.6
FAN05G0248 Fragaria x ananassa HOM05D008701 ORTHO05D010238 1.4e-22 110.9 276 36.6
Thecc.02G167700 Theobroma cacao HOM05D008701 ORTHO05D010238 5.3e-22 109.0 276 36.2
TAR011G0003 Trochodendron aralioides HOM05D008701 ORTHO05D010238 5.3e-22 109.0 293 33.1
MD09G1098800 Malus domestica HOM05D008701 ORTHO05D010238 1.2e-21 107.8 276 35.1
Potri.019G119000 Populus trichocarpa HOM05D008701 ORTHO05D010238 4.5e-21 105.9 285 33.0
Gorai.005G206900 Gossypium raimondii HOM05D008701 ORTHO05D010238 1.9e-19 100.5 268 32.8
TAR626G1447 Trochodendron aralioides HOM05D008701 ORTHO05D010238 9.4e-19 98.2 288 33.7
Dinv02575 Davidia involucrata HOM05D008701 ORTHO05D028399 1.4e-17 94.4 273 33.3
TWI36G1014 Tripterygium wilfordii HOM05D008701 ORTHO05D010238 1.8e-17 94.0 250 34.4
Duzib052G1245 Durio zibethinus HOM05D008701 ORTHO05D010238 2.3e-17 93.6 281 35.6
MD17G1087000 Malus domestica HOM05D008701 ORTHO05D010238 5.1e-17 92.4 278 32.4
Sabra16G0271700 Salix brachista HOM05D006433 ORTHO05D005382 8.8e-17 91.7 274 31.8
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 8.8e-17 91.7 274 31.8
Gohir.D02G184600 Gossypium hirsutum HOM05D008701 ORTHO05D010238 1.1e-16 91.3 266 31.6
Duzib132G0833 Durio zibethinus HOM05D008701 ORTHO05D010238 4.3e-16 89.4 277 33.6
Sabra13G0120500 Salix brachista HOM05D008701 ORTHO05D010238 9.7e-16 88.2 268 30.6
Nn1g03826 Nelumbo nucifera HOM05D008701 ORTHO05D005382 6.3e-15 85.5 316 30.1
TWI39G0991 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 3.1e-14 83.2 297 31.0
Potri.001G408900 Populus trichocarpa HOM05D006433 ORTHO05D005382 5.3e-14 82.4 272 29.4
Atru.chr6.3092 Acer truncatum HOM05D008701 ORTHO05D010238 1.5e-13 80.9 272 31.6
Gohir.D01G015000 Gossypium hirsutum HOM05D008701 ORTHO05D010238 1.5e-13 80.9 263 31.9
Gohir.A03G161300 Gossypium hirsutum HOM05D008701 ORTHO05D010238 3.4e-13 79.7 266 29.7
GSVIVG01000448001 Vitis vinifera HOM05D008701 ORTHO05D010238 7.7e-13 78.6 252 34.1
Manes.12G085400 Manihot esculenta HOM05D008701 ORTHO05D010238 2.2e-12 77.0 282 30.9
Glyma.06G300500 Glycine max HOM05D010583 ORTHO05D010238 5.0e-12 75.9 218 33.9
Dinv08359 Davidia involucrata HOM05D012187 ORTHO05D005382 1.9e-11 73.9 189 33.3
DCAR_009707 Daucus carota HOM05D008701 ORTHO05D010238 4.2e-11 72.8 249 28.9
Gorai.002G016700 Gossypium raimondii HOM05D008701 ORTHO05D010238 5.5e-11 72.4 259 29.7
TAR624G0030 Trochodendron aralioides HOM05D008701 ORTHO05D010238 5.5e-11 72.4 128 40.6
TAR624G0398 Trochodendron aralioides HOM05D008701 ORTHO05D010238 5.5e-11 72.4 128 40.6
Gohir.A01G013700 Gossypium hirsutum HOM05D008701 ORTHO05D010238 9.4e-11 71.6 240 30.8
Sc12g0002640 Simmondsia chinensis HOM05D008701 ORTHO05D010238 1.2e-10 71.2 199 32.2
MBI02_g25137_MAGBIO Magnolia biondii HOM05D008701 ORTHO05D010238 1.4e-09 67.8 79 46.8
Glyma.12G104200 Glycine max HOM05D010583 ORTHO05D010238 1.8e-09 67.4 217 32.7
TWI38G1693 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 2.3e-09 67.0 215 30.2
TPR.G30079 Trifolium pratense HOM05D010583 ORTHO05D010238 3.9e-09 66.2 206 31.6
CiPaw.05G169900 Carya illinoinensis HOM05D006433 ORTHO05D005382 2.6e-08 63.5 140 33.6
Ciclev10031878m.g Citrus clementina HOM05D006433 ORTHO05D005382 9.7e-08 61.6 72 45.8
Phvul.011G109200 Phaseolus vulgaris HOM05D010583 ORTHO05D010238 1.7e-07 60.8 211 29.9
Duzib213G0682 Durio zibethinus HOM05D013385 ORTHO05D005382 2.2e-07 60.5 266 26.7
Rhsim06G0153900 Rhododendron simsii HOM05D038632 ORTHO05D028399 2.8e-07 60.1 274 27.0
TWI74G1071 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 2.8e-07 60.1 74 41.9
CiPaw.06G061400 Carya illinoinensis HOM05D006433 ORTHO05D005382 3.7e-07 59.7 69 47.8
Lsat_1_v5_gn_3_35360 Lactuca sativa HOM05D006433 ORTHO05D005382 3.7e-07 59.7 79 43.0
Medtr2g089380 Medicago truncatula HOM05D014616 ORTHO05D010238 3.7e-07 59.7 207 30.0
Phvul.005G110200 Phaseolus vulgaris HOM05D014616 ORTHO05D010238 3.7e-07 59.7 258 27.9
Actinidia09967 Actinidia chinensis HOM05D006433 ORTHO05D005382 4.8e-07 59.3 82 42.7
ATR0618G439 Amborella trichopoda HOM05D006433 ORTHO05D005382 4.8e-07 59.3 131 39.7
Glyma.13G303300 Glycine max HOM05D014616 ORTHO05D010238 4.8e-07 59.3 260 30.8
Potri.005G092400 Populus trichocarpa HOM05D006433 ORTHO05D005382 4.8e-07 59.3 71 46.5
Ciclev10018089m.g Citrus clementina HOM05D008701 ORTHO05D010238 6.3e-07 58.9 156 33.3
Prupe.1G347600 Prunus persica HOM05D006433 ORTHO05D005382 6.3e-07 58.9 80 42.5
TWI77G0994 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 6.3e-07 58.9 112 38.4
CANSAT56G2818 Cannabis sativa HOM05D006433 ORTHO05D005382 8.2e-07 58.5 76 44.7
Haze_11768 Corylus avellana HOM05D006433 ORTHO05D005382 8.2e-07 58.5 121 33.1
Sabra07G0060600 Salix brachista HOM05D006433 ORTHO05D005382 8.2e-07 58.5 70 41.4
Lj3g0023312 Lotus japonicus HOM05D014616 ORTHO05D010238 1.4e-06 57.8 257 29.2
RcHm_v2.0_Chr4g0446731 Rosa chinensis HOM05D006433 ORTHO05D005382 1.4e-06 57.8 77 42.9
Cpa.g.sc0.139 Carica papaya HOM05D006433 ORTHO05D005382 1.8e-06 57.4 159 35.2
QL03p044176 Quercus lobata HOM05D006433 ORTHO05D005382 1.8e-06 57.4 72 44.4
Duzib132G0593 Durio zibethinus HOM05D006433 ORTHO05D005382 2.4e-06 57.0 75 40.0
MBI06_g16016_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 2.4e-06 57.0 76 46.1
TPR.G30075 Trifolium pratense HOM05D010583 ORTHO05D010238 2.4e-06 57.0 205 29.3
CSS0012441 Camellia sinensis var. sinensis HOM05D038632 ORTHO05D028399 3.1e-06 56.6 214 30.4
Cfa008752 Carpinus fangiana HOM05D006433 ORTHO05D005382 3.1e-06 56.6 171 30.4
Nitab4.5_0000771g0160 Nicotiana tabacum HOM05D006433 ORTHO05D005382 3.1e-06 56.6 74 40.5
PGR083G0466 Punica granatum HOM05D012187 ORTHO05D005382 3.1e-06 56.6 188 28.7
TAR371G0604 Trochodendron aralioides HOM05D006433 ORTHO05D005382 4.1e-06 56.2 112 40.2
Glyma.09G282600 Glycine max HOM05D006433 ORTHO05D005382 5.3e-06 55.8 76 44.7
Medtr1g037520 Medicago truncatula HOM05D006433 ORTHO05D005382 7.0e-06 55.5 114 37.7
RhsimUnG0172600 Rhododendron simsii HOM05D012187 ORTHO05D021147 7.0e-06 55.5 289 22.8
Thecc.02G159800 Theobroma cacao HOM05D006433 ORTHO05D005382 7.0e-06 55.5 137 32.1
VMungo1127G2259 Vigna mungo HOM05D010583 ORTHO05D010238 7.0e-06 55.5 214 29.4
Gohir.A03G164900 Gossypium hirsutum HOM05D006433 ORTHO05D005382 9.1e-06 55.1 73 41.1


User provided reference genes

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