Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_12850 Corylus avellana HOM05D002437 ORTHO05D043733 1.5e-92 342.8 170 100.0
Cfa014387 Carpinus fangiana HOM05D002437 ORTHO05D043733 3.6e-62 241.9 145 86.2
Haze_12851 Corylus avellana HOM05D002437 ORTHO05D164070 1.1e-42 177.2 99 88.9
Actinidia26905 Actinidia chinensis HOM05D002437 ORTHO05D002831 1.2e-12 77.4 91 51.6
Nitab4.5_0004810g0010 Nicotiana tabacum HOM05D002437 ORTHO05D002831 3.4e-12 75.9 89 50.6
CSS0009987 Camellia sinensis var. sinensis HOM05D002437 ORTHO05D002831 4.5e-12 75.5 89 50.6
CSS0030143 Camellia sinensis var. sinensis HOM05D002437 ORTHO05D002831 4.5e-12 75.5 89 50.6
Potri.004G012100 Populus trichocarpa HOM05D002437 ORTHO05D002831 4.5e-12 75.5 90 51.1
Actinidia05508 Actinidia chinensis HOM05D002437 ORTHO05D002831 7.6e-12 74.7 89 50.6
Sabra04G0005600 Salix brachista HOM05D002437 ORTHO05D002831 9.9e-12 74.3 90 50.0
Nitab4.5_0002827g0080 Nicotiana tabacum HOM05D002437 ORTHO05D002831 1.7e-11 73.6 89 49.4
Ca_00668_v3 Cicer arietinum L. HOM05D002437 ORTHO05D002831 2.2e-11 73.2 116 45.7
TAR626G1698 Trochodendron aralioides HOM05D002437 ORTHO05D002831 2.9e-11 72.8 89 49.4
GSVIVG01030440001 Vitis vinifera HOM05D002437 ORTHO05D002831 2.9e-11 72.8 101 42.6
Hma1.2p1_0673F.1_g201480 Hydrangea macrophylla HOM05D002437 ORTHO05D002831 3.8e-11 72.4 88 48.9
Lj1A1232T92 Lonicera japonica HOM05D002437 ORTHO05D002831 3.8e-11 72.4 89 50.6
TAR622G1392 Trochodendron aralioides HOM05D002437 ORTHO05D002831 3.8e-11 72.4 89 50.6
Cfa020324 Carpinus fangiana HOM05D002437 ORTHO05D002831 4.9e-11 72.0 91 48.4
Dinv13902 Davidia involucrata HOM05D002437 ORTHO05D002831 4.9e-11 72.0 115 43.5
Dinv22252 Davidia involucrata HOM05D002437 ORTHO05D002831 4.9e-11 72.0 89 50.6
Solyc02g032860.3 Solanum lycopersicum HOM05D002437 ORTHO05D002831 4.9e-11 72.0 90 51.1
Nitab4.5_0006396g0020 Nicotiana tabacum HOM05D002437 ORTHO05D002831 6.4e-11 71.6 91 51.6
Sopen02g011260 Solanum pennellii HOM05D002437 ORTHO05D002831 6.4e-11 71.6 90 51.1
MSTRG.7201 Avicennia marina HOM05D002437 ORTHO05D002831 8.4e-11 71.2 102 46.1
Duzib160G0896 Durio zibethinus HOM05D002437 ORTHO05D002831 8.4e-11 71.2 89 49.4
SGA_v2.0_scaffold7G03822 Striga asiatica HOM05D002437 ORTHO05D002831 8.4e-11 71.2 90 51.1
CSS0028007 Camellia sinensis var. sinensis HOM05D002437 ORTHO05D002831 1.1e-10 70.9 91 48.4
Cpa.g.sc152.28 Carica papaya HOM05D002437 ORTHO05D002831 1.1e-10 70.9 89 48.3
Gohir.A06G148700 Gossypium hirsutum HOM05D002437 ORTHO05D002831 1.1e-10 70.9 89 47.2
PGSC0003DMG400019872 Solanum tuberosum HOM05D002437 ORTHO05D002831 1.1e-10 70.9 90 50.0
COL.COLO4_31790 Corchorus olitorius HOM05D002437 ORTHO05D002831 1.4e-10 70.5 89 48.3
MD05G1348200 Malus domestica HOM05D002437 ORTHO05D002831 1.4e-10 70.5 89 50.6
Peaxi162Scf00147g00511 Petunia axillaris HOM05D002437 ORTHO05D002831 1.4e-10 70.5 89 49.4
Oeu013630.1 Olea europaea HOM05D002437 ORTHO05D002831 1.9e-10 70.1 89 48.3
SalBow1G5792 Salvia bowleyana HOM05D002437 ORTHO05D002831 1.9e-10 70.1 90 48.9
ClCG01G021900 Citrullus lanatus HOM05D002437 ORTHO05D002831 2.4e-10 69.7 89 49.4
Gohir.D06G154800 Gossypium hirsutum HOM05D002437 ORTHO05D002831 2.4e-10 69.7 89 47.2
Gorai.010G180900 Gossypium raimondii HOM05D002437 ORTHO05D002831 2.4e-10 69.7 89 47.2
Nn1g07167 Nelumbo nucifera HOM05D002437 ORTHO05D002831 2.4e-10 69.7 106 47.2
Psat1g179680 Pisum sativum HOM05D002437 ORTHO05D002831 3.2e-10 69.3 89 48.3
PGR004G0026 Punica granatum HOM05D002437 ORTHO05D002831 3.2e-10 69.3 90 50.0
Solyc02g080640.4 Solanum lycopersicum HOM05D002437 ORTHO05D002831 3.2e-10 69.3 89 47.2
Sopen02g025350 Solanum pennellii HOM05D002437 ORTHO05D002831 3.2e-10 69.3 89 47.2
Medtr2g023540 Medicago truncatula HOM05D002437 ORTHO05D002831 4.2e-10 68.9 91 46.2
PGSC0003DMG400016477 Solanum tuberosum HOM05D002437 ORTHO05D002831 4.2e-10 68.9 89 47.2
CiPaw.10G072000 Carya illinoinensis HOM05D002437 ORTHO05D002831 5.4e-10 68.6 89 48.3
Haze_06811 Corylus avellana HOM05D002437 ORTHO05D002831 5.4e-10 68.6 91 49.5
Lj2C267T7 Lonicera japonica HOM05D002437 ORTHO05D002831 5.4e-10 68.6 89 48.3
ECA234G2099 Erigeron canadensis HOM05D002437 ORTHO05D002831 7.1e-10 68.2 109 45.9
Oeu002743.1 Olea europaea HOM05D002437 ORTHO05D002831 7.1e-10 68.2 89 48.3
Atru.chr10.2242 Acer truncatum HOM05D002437 ORTHO05D002831 9.3e-10 67.8 89 46.1
Ciclev10015162m.g Citrus clementina HOM05D002437 ORTHO05D002831 9.3e-10 67.8 92 48.9
arahy.Tifrunner.gnm1.ann1.FJ1N0Z Arachis hypogaea HOM05D002437 ORTHO05D002831 1.2e-09 67.4 89 47.2
MD10G1323000 Malus domestica HOM05D002437 ORTHO05D002831 1.2e-09 67.4 89 48.3
CAN.G1014.3 Capsicum annuum HOM05D002437 ORTHO05D002831 1.6e-09 67.0 89 47.2
MELO3C007398.2 Cucumis melo HOM05D002437 ORTHO05D002831 1.6e-09 67.0 89 47.2
Nitab4.5_0007864g0060 Nicotiana tabacum HOM05D002437 ORTHO05D002831 1.6e-09 67.0 90 48.9
QL08p009538 Quercus lobata HOM05D002437 ORTHO05D002831 1.6e-09 67.0 91 47.3
Sed0011125 Sechium edule HOM05D002437 ORTHO05D002831 1.6e-09 67.0 91 48.4
GSVIVG01004634001 Vitis vinifera HOM05D002437 ORTHO05D002831 1.6e-09 67.0 89 44.9
MSTRG.13135 Avicennia marina HOM05D002437 ORTHO05D002831 2.1e-09 66.6 89 47.2
Prupe.4G019200 Prunus persica HOM05D002437 ORTHO05D002831 2.1e-09 66.6 89 47.2
TPR.G13455 Trifolium pratense HOM05D002437 ORTHO05D002831 2.1e-09 66.6 89 46.1
Lsat_1_v5_gn_4_59381 Lactuca sativa HOM05D002437 ORTHO05D002831 2.7e-09 66.2 90 47.8
PGR083G1495 Punica granatum HOM05D002437 ORTHO05D002831 2.7e-09 66.2 91 48.4
Lsat_1_v5_gn_7_16240 Lactuca sativa HOM05D002437 ORTHO05D002831 3.5e-09 65.9 90 48.9
Thecc.06G222500 Theobroma cacao HOM05D002437 ORTHO05D002831 3.5e-09 65.9 89 47.2
VMungo0540G2362 Vigna mungo HOM05D002437 ORTHO05D002831 3.5e-09 65.9 89 46.1
GSVIVG01012712001 Vitis vinifera HOM05D002437 ORTHO05D002831 3.5e-09 65.9 83 45.8
CANSAT56G2408 Cannabis sativa HOM05D002437 ORTHO05D002831 4.6e-09 65.5 90 47.8
CsaV3_6G048960 Cucumis sativus L. HOM05D002437 ORTHO05D002831 4.6e-09 65.5 89 46.1
arahy.Tifrunner.gnm1.ann1.L2Y6DG Arachis hypogaea HOM05D002437 ORTHO05D002831 6.0e-09 65.1 89 46.1
Cfa000210 Carpinus fangiana HOM05D002437 ORTHO05D002831 6.0e-09 65.1 93 46.2
Glyma.15G108700 Glycine max HOM05D002437 ORTHO05D002831 6.0e-09 65.1 89 47.2
Manes.16G006000 Manihot esculenta HOM05D002437 ORTHO05D002831 6.0e-09 65.1 84 48.8
vmacro22536 Vaccinium macrocarpon HOM05D002437 ORTHO05D002831 6.0e-09 65.1 81 51.9
CSS0035475 Camellia sinensis var. sinensis HOM05D002437 ORTHO05D002831 7.9e-09 64.7 89 46.1
Cc09_g01560 Coffea canephora HOM05D002437 ORTHO05D002831 7.9e-09 64.7 90 48.9
Nn1g03490 Nelumbo nucifera HOM05D002437 ORTHO05D002831 7.9e-09 64.7 93 48.4
RcHm_v2.0_Chr5g0002761 Rosa chinensis HOM05D002437 ORTHO05D002831 7.9e-09 64.7 89 46.1
COL.COLO4_04289 Corchorus olitorius HOM05D002437 ORTHO05D002831 1.0e-08 64.3 83 48.2
Oeu014930.1 Olea europaea HOM05D002437 ORTHO05D002831 1.0e-08 64.3 89 46.1
PSO832G3649 Papaver somniferum HOM05D002437 ORTHO05D002831 1.0e-08 64.3 90 47.8
Dinv40768 Davidia involucrata HOM05D002437 ORTHO05D002831 1.3e-08 63.9 92 46.7
HanXRQChr16g0515511 Helianthus annuus HOM05D002437 ORTHO05D002831 1.3e-08 63.9 112 41.1
MD03G1198900 Malus domestica HOM05D002437 ORTHO05D002831 1.3e-08 63.9 83 48.2
Migut.H01574 Erythranthe guttata HOM05D002437 ORTHO05D002831 1.8e-08 63.5 83 47.0
Glyma.09G004400 Glycine max HOM05D002437 ORTHO05D002831 1.8e-08 63.5 89 46.1
HanXRQChr05g0129431 Helianthus annuus HOM05D002437 ORTHO05D002831 1.8e-08 63.5 90 48.9
Nitab4.5_0000005g0310 Nicotiana tabacum HOM05D002437 ORTHO05D002831 1.8e-08 63.5 91 48.4
Phvul.006G149200 Phaseolus vulgaris HOM05D002437 ORTHO05D002831 1.8e-08 63.5 89 46.1
SGA_v2.0_scaffold89G27468 Striga asiatica HOM05D002437 ORTHO05D002831 1.8e-08 63.5 90 48.9
unitig_61.g26100 Utricularia gibba HOM05D002437 ORTHO05D002831 1.8e-08 63.5 90 45.6
Lalb_Chr18g0056421 Lupinus albus HOM05D002437 ORTHO05D002831 2.3e-08 63.2 89 44.9
Sopen03g005490 Solanum pennellii HOM05D002437 ORTHO05D002831 2.3e-08 63.2 78 51.3
PGSC0003DMG402005074 Solanum tuberosum HOM05D002437 ORTHO05D002831 2.3e-08 63.2 78 51.3
A09p26210 Brassica napus HOM05D002437 ORTHO05D002831 3.9e-08 62.4 89 44.9
BraA09t38189Z Brassica rapa HOM05D002437 ORTHO05D002831 3.9e-08 62.4 89 44.9
CAN.G39.4 Capsicum annuum HOM05D002437 ORTHO05D002831 3.9e-08 62.4 91 46.2
Solyc03g031620.3 Solanum lycopersicum HOM05D002437 ORTHO05D002831 3.9e-08 62.4 78 51.3
Eucgr.D01338 Eucalyptus grandis HOM05D002437 ORTHO05D002831 5.1e-08 62.0 92 47.8
Gohir.A05G171200 Gossypium hirsutum HOM05D002437 ORTHO05D002831 5.1e-08 62.0 89 43.8
Gorai.009G179500 Gossypium raimondii HOM05D002437 ORTHO05D002831 5.1e-08 62.0 89 43.8
Sc05g0009260 Simmondsia chinensis HOM05D002437 ORTHO05D002831 5.1e-08 62.0 96 41.7
BcaC04g21311 Brassica carinata HOM05D002437 ORTHO05D002831 6.7e-08 61.6 113 38.9
C09p33300 Brassica napus HOM05D002437 ORTHO05D002831 6.7e-08 61.6 113 38.9
BolC9t56166H Brassica oleracea HOM05D002437 ORTHO05D002831 6.7e-08 61.6 113 38.9
Duzib235G1449 Durio zibethinus HOM05D002437 ORTHO05D002831 6.7e-08 61.6 89 44.9
Lj6g0003909 Lotus japonicus HOM05D002437 ORTHO05D002831 6.7e-08 61.6 89 44.9
THA.LOC104809496 Tarenaya hassleriana HOM05D002437 ORTHO05D002831 6.7e-08 61.6 90 45.6
arahy.Tifrunner.gnm1.ann1.5H5XYM Arachis hypogaea HOM05D002437 ORTHO05D002831 8.7e-08 61.2 102 42.2
CiPaw.09G093000 Carya illinoinensis HOM05D002437 ORTHO05D002831 8.7e-08 61.2 92 44.6
MBI02_g00378_MAGBIO Magnolia biondii HOM05D002437 ORTHO05D002831 8.7e-08 61.2 116 41.4
MBI02_g09975_MAGBIO Magnolia biondii HOM05D002437 ORTHO05D002831 8.7e-08 61.2 116 41.4
QL08p032721 Quercus lobata HOM05D002437 ORTHO05D002831 8.7e-08 61.2 134 36.6
Gohir.D05G174200 Gossypium hirsutum HOM05D002437 ORTHO05D002831 1.1e-07 60.8 89 42.7
PSO210G4275 Papaver somniferum HOM05D002437 ORTHO05D002831 1.1e-07 60.8 89 44.9
QL05p072936 Quercus lobata HOM05D002437 ORTHO05D002831 1.1e-07 60.8 96 43.8
Cpa.g.sc12.285 Carica papaya HOM05D002437 ORTHO05D002831 1.5e-07 60.5 89 43.8
FvH4_3g01900 Fragaria vesca HOM05D002437 ORTHO05D002831 1.5e-07 60.5 135 36.3
Rhsim06G0218800 Rhododendron simsii HOM05D002437 ORTHO05D002831 1.5e-07 60.5 126 36.5
RhsimUnG0089100 Rhododendron simsii HOM05D002437 ORTHO05D002831 1.5e-07 60.5 91 46.2
Sc17g0007430 Simmondsia chinensis HOM05D002437 ORTHO05D002831 1.5e-07 60.5 107 41.1
TWI38G0801 Tripterygium wilfordii HOM05D002437 ORTHO05D002831 1.9e-07 60.1 92 45.7
AT4G04610 Arabidopsis thaliana HOM05D002437 ORTHO05D002831 2.5e-07 59.7 91 41.8
Carub.0002s0287 Capsella rubella HOM05D002437 ORTHO05D002831 2.5e-07 59.7 91 46.2
CsaV3_1G010690 Cucumis sativus L. HOM05D002437 ORTHO05D002831 2.5e-07 59.7 95 42.1
arahy.Tifrunner.gnm1.ann1.E3Q78B Arachis hypogaea HOM05D002437 ORTHO05D002831 3.3e-07 59.3 106 40.6
QL93p2020_0035 Quercus lobata HOM05D002437 ORTHO05D002831 3.3e-07 59.3 104 41.3
EL10Ac8g20074 Beta vulgaris HOM05D002437 ORTHO05D002831 4.3e-07 58.9 147 40.1
Thhalv10028642m.g Eutrema salsugineum HOM05D002437 ORTHO05D002831 4.3e-07 58.9 91 41.8
Manes.17G026200 Manihot esculenta HOM05D002437 ORTHO05D002831 4.3e-07 58.9 92 41.3
BcaB01g01819 Brassica carinata HOM05D002437 ORTHO05D002831 5.6e-07 58.5 92 43.5
CARHR252940 Cardamine hirsuta HOM05D002437 ORTHO05D002831 5.6e-07 58.5 93 41.9
AL2G13750 Arabidopsis lyrata HOM05D002437 ORTHO05D002831 7.4e-07 58.2 93 45.2
Lalb_Chr15g0087651 Lupinus albus HOM05D002437 ORTHO05D002831 7.4e-07 58.2 90 43.3
AT1G62180 Arabidopsis thaliana HOM05D002437 ORTHO05D002831 9.6e-07 57.8 93 45.2
MELO3C002450.2 Cucumis melo HOM05D002437 ORTHO05D002831 9.6e-07 57.8 95 41.1
Thhalv10023459m.g Eutrema salsugineum HOM05D002437 ORTHO05D002831 1.3e-06 57.4 94 43.6
Sp6g04320 Schrenkiella parvula HOM05D002437 ORTHO05D002831 1.3e-06 57.4 91 40.7
Hund23459 Selenicereus undatus HOM05D002437 ORTHO05D002831 1.3e-06 57.4 98 42.9
AUR62043469 Chenopodium quinoa HOM05D002437 ORTHO05D002831 1.6e-06 57.0 142 38.0
HanXRQChr15g0470721 Helianthus annuus HOM05D002437 ORTHO05D002831 1.6e-06 57.0 86 47.7
Migut.M01329 Erythranthe guttata HOM05D002437 ORTHO05D002831 2.1e-06 56.6 90 43.3
THA.LOC104818752 Tarenaya hassleriana HOM05D002437 ORTHO05D002831 4.8e-06 55.5 82 47.6
Prupe.4G216100 Prunus persica HOM05D002437 ORTHO05D002831 6.2e-06 55.1 89 41.6
Prupe.I005500 Prunus persica HOM05D002437 ORTHO05D002831 6.2e-06 55.1 104 38.5
Ah.09g234800 Amaranthus hybridus HOM05D002437 ORTHO05D002831 8.1e-06 54.7 144 38.2
Aqoxy1G03596 Aquilegia oxysepala HOM05D002437 ORTHO05D002831 8.1e-06 54.7 94 41.5


User provided reference genes

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