Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 9.4e-43 176.4 86 100.0
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 1.4e-41 172.6 86 98.8
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 5.1e-41 170.6 86 97.7
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 7.7e-37 156.8 85 88.2
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 1.0e-36 156.4 85 88.2
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 2.2e-36 155.2 87 88.5
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 9.4e-35 149.8 81 86.4
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 2.7e-34 148.3 90 80.0
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.7e-34 148.3 81 86.4
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.7e-34 148.3 81 86.4
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 2.7e-34 148.3 77 89.6
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.6e-34 147.9 81 85.2
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 3.6e-34 147.9 86 81.4
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 4.7e-34 147.5 78 89.7
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 4.7e-34 147.5 80 87.5
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 4.7e-34 147.5 89 80.9
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 4.7e-34 147.5 81 86.4
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 6.1e-34 147.1 78 88.5
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 6.1e-34 147.1 89 79.8
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 8.0e-34 146.7 78 85.9
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 8.0e-34 146.7 81 85.2
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 8.0e-34 146.7 81 85.2
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 8.0e-34 146.7 78 87.2
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 8.0e-34 146.7 78 87.2
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 8.0e-34 146.7 80 85.0
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 8.0e-34 146.7 78 88.5
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 1.0e-33 146.4 78 84.6
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 1.0e-33 146.4 81 85.2
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 1.4e-33 146.0 78 85.9
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 1.4e-33 146.0 78 87.2
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 1.8e-33 145.6 77 85.7
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 1.8e-33 145.6 78 87.2
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 1.8e-33 145.6 78 87.2
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 1.8e-33 145.6 78 85.9
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 1.8e-33 145.6 77 87.0
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.3e-33 145.2 77 85.7
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 2.3e-33 145.2 78 84.6
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 3.0e-33 144.8 83 79.5
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 3.0e-33 144.8 77 87.0
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 3.0e-33 144.8 78 87.2
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 3.0e-33 144.8 78 83.3
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 3.0e-33 144.8 78 83.3
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 3.9e-33 144.4 83 81.9
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 3.9e-33 144.4 77 88.3
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 3.9e-33 144.4 77 88.3
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 3.9e-33 144.4 81 84.0
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 3.9e-33 144.4 78 85.9
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 3.9e-33 144.4 86 76.7
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 5.2e-33 144.1 80 83.8
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 5.2e-33 144.1 78 85.9
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 6.7e-33 143.7 77 85.7
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 6.7e-33 143.7 77 85.7
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 6.7e-33 143.7 80 83.8
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 1.1e-32 142.9 81 81.5
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 1.1e-32 142.9 78 82.1
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 1.5e-32 142.5 72 98.6
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 1.5e-32 142.5 84 78.6
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 2.0e-32 142.1 81 81.5
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 2.0e-32 142.1 78 85.9
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 2.6e-32 141.7 77 85.7
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 2.6e-32 141.7 80 81.2
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 3.3e-32 141.4 78 80.8
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 7.4e-32 140.2 77 84.4
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 9.7e-32 139.8 78 82.1
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 9.7e-32 139.8 75 93.3
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 1.3e-31 139.4 82 80.5
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 1.3e-31 139.4 89 76.4
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 2.2e-31 138.7 72 95.8
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 2.2e-31 138.7 75 84.0
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 2.2e-31 138.7 80 80.0
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 2.2e-31 138.7 78 79.5
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 2.8e-31 138.3 79 81.0
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 2.8e-31 138.3 81 79.0
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 3.7e-31 137.9 79 81.0
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 3.7e-31 137.9 81 79.0
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 4.8e-31 137.5 79 81.0
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 4.8e-31 137.5 81 82.7
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 4.8e-31 137.5 81 82.7
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 4.8e-31 137.5 78 79.5
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 8.2e-31 136.7 80 80.0
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.4e-30 136.0 78 78.2
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.4e-30 136.0 92 71.7
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 3.1e-30 134.8 80 78.8
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 4.1e-30 134.4 79 78.5
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 4.1e-30 134.4 79 77.2
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 5.3e-30 134.0 81 75.3
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 7.0e-30 133.7 79 75.9
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 7.0e-30 133.7 79 77.2
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 2.6e-29 131.7 79 74.7
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 3.5e-29 131.3 79 74.7
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 3.5e-29 131.3 79 74.7
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 3.5e-29 131.3 79 74.7
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 4.5e-29 131.0 94 70.2
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 1.0e-28 129.8 79 75.9
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 1.3e-28 129.4 79 75.9
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 1.3e-28 129.4 79 75.9
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 2.2e-28 128.6 79 74.7
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 2.2e-28 128.6 79 74.7
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 2.2e-28 128.6 79 74.7
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.8e-28 127.9 81 77.8
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 8.5e-28 126.7 66 89.4
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 8.5e-28 126.7 70 85.7
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 1.5e-27 125.9 67 89.6
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 1.5e-27 125.9 113 56.6
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 5.5e-27 124.0 70 91.4
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 7.2e-27 123.6 70 90.0
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 1.2e-26 122.9 69 88.4
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 8.0e-26 120.2 72 83.3
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 8.0e-26 120.2 69 78.3
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 1.0e-25 119.8 72 81.9
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.8e-25 119.0 64 85.9
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 2.3e-25 118.6 67 82.1
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 3.0e-25 118.2 68 82.4
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 3.0e-25 118.2 72 76.4
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.2e-24 116.3 61 83.6
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 1.5e-24 115.9 78 73.1
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 1.1e-22 109.8 72 70.8
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 5.3e-22 107.5 74 66.2
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 5.3e-22 107.5 50 90.0
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 7.0e-22 107.1 66 74.2
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 5.5e-19 97.4 77 57.1
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 6.1e-18 94.0 50 78.0
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 5.2e-17 90.9 61 68.9
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 5.2e-17 90.9 61 68.9
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 5.2e-17 90.9 48 77.1
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 5.2e-17 90.9 48 77.1
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 2.0e-16 89.0 49 83.7
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 4.4e-16 87.8 73 58.9
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 9.8e-16 86.7 66 62.1
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 7.7e-13 77.0 35 88.6
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 2.9e-12 75.1 71 54.9
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 9.5e-11 70.1 39 89.7
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 1.2e-10 69.7 38 73.7
arahy.Tifrunner.gnm1.ann1.0A1TZX Arachis hypogaea HOM05D001400 ORTHO05D016394 8.0e-10 67.0 36 75.0
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 1.5e-08 62.8 39 61.5
MCO07G551 Micromonas commoda HOM05D005881 ORTHO05D007298 5.7e-08 60.8 71 38.0
SalBow5G0226 Salvia bowleyana HOM05D005881 ORTHO05D007298 3.1e-06 55.1 37 62.2


User provided reference genes

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