Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 5.0e-293 1010.4 514 100.0
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 4.7e-275 950.7 514 94.2
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 7.2e-191 671.0 514 69.5
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 1.0e-181 640.6 457 72.4
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 3.1e-141 506.1 513 54.4
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 5.3e-141 505.4 513 55.8
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 7.9e-137 491.5 535 52.5
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 9.3e-130 468.0 517 53.0
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 4.6e-129 465.7 517 51.6
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 3.4e-124 449.5 511 50.9
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 9.3e-122 441.4 657 44.0
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 9.3e-122 441.4 535 49.0
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 2.7e-121 439.9 519 49.5
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 3.9e-120 436.0 644 43.0
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 1.1e-119 434.5 514 48.8
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.5e-119 433.3 514 48.4
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 2.6e-116 423.3 536 48.3
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 1.3e-115 421.0 648 43.1
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 7.2e-114 415.2 513 48.5
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 1.0e-112 411.4 459 50.1
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 3.0e-112 409.8 638 43.3
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 6.7e-112 408.7 511 47.4
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 3.4e-108 396.4 519 46.8
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.2e-107 393.7 646 41.3
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 6.5e-107 392.1 516 46.9
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 2.7e-105 386.7 646 41.2
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 2.3e-104 383.6 517 45.5
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.9e-104 382.9 646 41.0
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 4.4e-103 379.4 646 40.6
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 4.4e-103 379.4 519 45.5
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 8.2e-102 375.2 526 45.4
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 4.1e-101 372.9 515 44.5
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.2e-100 371.3 646 40.1
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 2.0e-95 354.0 476 45.4
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 5.7e-95 352.4 821 34.7
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 4.8e-94 349.4 524 43.1
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 4.1e-93 346.3 615 38.5
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 2.6e-92 343.6 393 49.6
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 6.5e-91 339.0 482 45.2
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 4.2e-90 336.3 603 38.0
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 7.2e-90 335.5 390 48.7
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 6.1e-89 332.4 516 42.2
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 6.1e-89 332.4 390 49.5
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 1.7e-86 324.3 413 45.8
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 6.3e-86 322.4 413 46.7
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 3.1e-85 320.1 724 34.7
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 1.2e-84 318.2 582 37.5
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 7.7e-84 315.5 585 37.6
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 2.9e-83 313.5 430 46.0
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 5.0e-83 312.8 392 45.9
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 6.5e-83 312.4 581 36.7
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 8.0e-81 305.4 589 36.8
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 4.0e-80 303.1 633 35.7
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 4.0e-80 303.1 473 38.9
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 1.3e-78 298.1 826 30.1
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 6.6e-75 285.8 718 32.3
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 6.1e-73 279.3 415 45.3
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 5.2e-72 276.2 402 44.5
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 2.0e-71 274.2 533 36.4
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 1.1e-69 268.5 391 40.4
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 5.9e-68 262.7 303 51.2
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 5.9e-68 262.7 519 36.6
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 5.9e-68 262.7 519 35.6
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 1.0e-67 261.9 303 51.2
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 1.3e-67 261.5 374 44.9
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 1.9e-66 257.7 239 54.8
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.5e-66 257.3 438 37.9
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 9.5e-66 255.4 698 30.8
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 2.8e-65 253.8 291 52.6
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 1.8e-64 251.1 617 31.6
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 2.9e-62 243.8 526 36.5
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 3.7e-62 243.4 402 41.8
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 1.1e-61 241.9 578 33.2
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 1.3e-59 235.0 677 29.7
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 8.6e-59 232.3 344 43.3
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 1.5e-58 231.5 397 40.6
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 4.3e-58 229.9 240 48.8
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 1.2e-57 228.4 691 29.1
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 2.3e-56 224.2 735 28.2
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 6.8e-56 222.6 732 28.3
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 8.9e-56 222.2 568 32.6
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 4.4e-55 219.9 608 30.3
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 4.1e-53 213.4 405 37.8
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 7.1e-53 212.6 764 28.1
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 1.6e-52 211.5 721 28.3
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 3.5e-52 210.3 276 42.0
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 3.0e-51 207.2 728 27.6
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 3.0e-51 207.2 441 34.5
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 1.1e-48 198.7 714 27.6
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 2.3e-48 197.6 706 28.2
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 6.8e-48 196.1 553 29.1
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.5e-47 194.9 610 28.7
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 9.9e-47 192.2 284 44.7
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 1.3e-46 191.8 718 27.7
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 8.4e-46 189.1 719 27.4
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 1.4e-45 188.3 729 26.5
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 2.4e-45 187.6 714 27.3
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 2.4e-45 187.6 714 27.9
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 3.2e-45 187.2 683 27.8
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 5.4e-45 186.4 713 27.6
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 2.7e-44 184.1 683 27.7
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.7e-43 181.4 324 37.0
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.2e-41 175.3 223 44.4
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 6.2e-41 172.9 318 39.6
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 2.0e-39 167.9 399 35.1
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 4.4e-39 166.8 560 27.7
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 6.4e-38 162.9 524 30.9
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 1.1e-37 162.2 740 25.7
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 1.9e-37 161.4 249 40.2
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 1.6e-36 158.3 278 39.2
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.7e-36 157.5 373 34.3
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.7e-36 157.5 373 34.3
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 7.8e-36 156.0 375 33.3
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 3.0e-35 154.1 382 34.3
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 3.3e-34 150.6 473 31.9
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 2.1e-33 147.9 171 52.6
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 1.5e-31 141.7 385 30.6
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 3.8e-30 137.1 110 58.2
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 4.6e-28 130.2 386 29.3
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 7.9e-28 129.4 243 36.6
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.7e-27 128.3 149 45.0
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 2.3e-27 127.9 348 28.7
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 5.1e-27 126.7 522 27.4
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.4e-24 118.6 353 29.5
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.4e-24 118.6 353 29.5
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 6.7e-19 99.8 107 47.7
Lj1A781G48 Lonicera japonica HOM05D005385 ORTHO05D006768 1.0e-14 85.9 110 42.7
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 5.5e-13 80.1 106 44.3
ATR0580G041 Amborella trichopoda HOM05D005385 ORTHO05D006768 7.1e-13 79.7 496 23.6
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 6.0e-12 76.6 94 42.6
Nitab4.5_0004549g0040 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.2e-07 62.4 95 47.4


User provided reference genes

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