Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 7.9e-261 903.3 439 100.0
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 7.6e-171 604.4 435 68.3
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 3.2e-169 599.0 438 68.3
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 7.1e-169 597.8 431 67.7
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 1.0e-167 594.0 431 67.5
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 1.3e-167 593.6 431 66.8
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 2.3e-167 592.8 431 66.8
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 9.6e-166 587.4 436 67.4
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 3.2e-161 572.4 441 63.5
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 2.1e-160 569.7 429 64.3
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 2.7e-160 569.3 437 65.9
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 2.3e-159 566.2 440 65.5
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 1.5e-158 563.5 461 64.0
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 2.5e-158 562.8 428 63.3
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 5.6e-158 561.6 439 65.6
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 1.3e-157 560.5 447 63.5
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 1.6e-157 560.1 446 65.7
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 1.5e-155 553.5 437 64.3
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.9e-153 546.6 435 63.9
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 1.2e-152 543.9 433 64.7
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 2.3e-151 539.7 434 63.1
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 3.0e-151 539.3 432 61.3
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 1.9e-150 536.6 434 61.1
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 2.5e-150 536.2 433 63.0
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 3.3e-150 535.8 431 61.7
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 4.3e-150 535.4 432 60.9
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 1.6e-149 533.5 440 62.0
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 2.2e-149 533.1 443 60.9
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 2.8e-149 532.7 434 60.4
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 8.2e-149 531.2 439 60.8
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 5.0e-146 521.9 436 61.5
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 1.9e-145 520.0 434 61.3
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 3.2e-145 519.2 440 59.1
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 9.4e-145 517.7 434 60.6
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 9.4e-145 517.7 437 60.6
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 3.6e-144 515.8 376 66.2
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 6.1e-144 515.0 422 62.6
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 2.3e-143 513.1 424 59.4
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 6.7e-143 511.5 433 61.7
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 8.8e-143 511.1 417 60.2
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 1.1e-142 510.8 435 60.0
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 7.4e-142 508.1 435 59.5
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 2.8e-141 506.1 434 60.1
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 6.3e-141 505.0 434 60.1
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 6.3e-141 505.0 442 59.7
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 2.4e-140 503.1 444 57.7
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 1.5e-139 500.4 432 58.8
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 1.5e-139 500.4 430 58.1
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 5.9e-139 498.4 424 58.7
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 7.7e-139 498.0 444 58.1
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 7.7e-139 498.0 444 58.1
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 1.0e-138 497.7 444 58.3
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 2.2e-138 496.5 425 60.0
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 3.8e-138 495.7 449 58.8
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 5.0e-138 495.4 444 57.9
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 1.9e-137 493.4 444 57.7
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 1.9e-137 493.4 444 57.7
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 2.5e-137 493.0 433 58.0
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 1.8e-135 486.9 438 55.3
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 1.8e-135 486.9 413 59.3
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 3.0e-135 486.1 469 54.2
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.5e-131 473.8 378 63.0
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 5.9e-131 471.9 421 57.7
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 7.7e-131 471.5 473 53.1
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 6.5e-130 468.4 455 54.5
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 3.2e-129 466.1 455 54.5
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 4.2e-129 465.7 502 50.2
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 2.1e-128 463.4 437 53.5
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 6.1e-128 461.8 433 56.4
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 6.1e-128 461.8 386 58.5
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 6.7e-127 458.4 384 60.2
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 1.3e-125 454.1 382 59.4
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 6.3e-125 451.8 441 52.4
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 7.0e-124 448.4 442 54.3
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 1.2e-123 447.6 383 57.4
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 3.8e-122 442.6 387 57.9
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 6.5e-122 441.8 440 54.3
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 2.7e-120 436.4 430 53.0
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 2.7e-120 436.4 455 52.5
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 4.7e-120 435.6 379 56.7
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 1.5e-118 430.6 453 53.2
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 3.4e-118 429.5 448 53.3
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 4.4e-118 429.1 449 51.7
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 2.2e-117 426.8 436 51.1
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 3.7e-117 426.0 421 49.6
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 1.4e-116 424.1 450 52.2
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 1.4e-116 424.1 379 55.4
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 1.6e-115 420.6 447 52.6
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 5.9e-115 418.7 377 55.4
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 2.9e-114 416.4 379 55.1
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 3.2e-113 412.9 380 56.3
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 4.2e-113 412.5 371 55.5
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 9.4e-113 411.4 444 50.9
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 4.7e-112 409.1 444 50.7
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 1.4e-111 407.5 426 51.9
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 4.4e-110 402.5 505 44.6
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 2.8e-109 399.8 349 58.2
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 1.4e-108 397.5 377 52.5
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 2.4e-108 396.7 348 60.3
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 8.6e-106 388.3 431 51.7
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 3.3e-105 386.3 420 51.2
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 1.2e-104 384.4 440 48.6
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 1.6e-104 384.0 325 57.8
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 1.2e-102 377.9 400 50.5
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 2.4e-100 370.2 457 46.4
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 2.0e-99 367.1 420 47.1
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 1.9e-97 360.5 299 58.9
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 7.3e-97 358.6 399 50.6
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 2.6e-94 350.1 445 45.2
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 1.7e-93 347.4 383 48.8
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 6.4e-93 345.5 449 45.2
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 2.0e-91 340.5 449 45.0
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 1.7e-90 337.4 420 45.5
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 8.0e-88 328.6 426 40.4
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 3.1e-87 326.6 464 39.4
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 5.2e-87 325.9 352 50.6
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.7e-85 320.9 429 40.3
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 6.4e-85 318.9 455 44.4
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 1.4e-84 317.8 419 45.1
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 2.3e-74 283.9 270 55.6
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 1.2e-72 278.1 421 38.0
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.7e-67 260.4 390 37.2
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 1.5e-57 228.0 425 31.5
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 2.2e-53 214.2 293 42.7
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 2.9e-29 134.0 129 48.8
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 5.3e-23 113.2 170 40.0
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 3.6e-19 100.5 59 86.4
SEGI_18115 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 4.1e-15 87.0 97 47.4
Hma1.2p1_0545F.1_g176010 Hydrangea macrophylla HOM05D005756 ORTHO05D018916 6.5e-13 79.7 57 77.2
Lj1C795T1 Lonicera japonica HOM05D005756 ORTHO05D018916 1.1e-12 79.0 63 71.4
Dinv21288 Davidia involucrata HOM05D005756 ORTHO05D018916 1.6e-11 75.1 68 60.3
DCAR_019685 Daucus carota HOM05D005756 ORTHO05D018916 8.8e-10 69.3 57 64.9
Oeu027645.1 Olea europaea HOM05D005756 ORTHO05D018916 8.8e-10 69.3 53 73.6
Sc21g0000680 Simmondsia chinensis HOM05D005756 ORTHO05D018916 2.0e-06 58.2 39 74.4


User provided reference genes

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