Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 2.3e-91 339.0 184 100.0
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 4.3e-77 291.6 187 88.2
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 4.8e-60 235.0 193 70.5
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.3e-54 216.1 188 70.2
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.3e-54 216.1 197 62.9
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 8.7e-54 214.2 197 63.5
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 7.3e-53 211.1 206 68.0
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 2.8e-52 209.1 180 66.7
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 4.8e-52 208.4 189 65.6
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 6.2e-52 208.0 196 61.2
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 2.4e-51 206.1 189 62.4
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 4.0e-51 205.3 197 61.9
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 5.3e-51 204.9 200 61.5
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 4.5e-50 201.8 188 63.3
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 7.6e-50 201.1 189 62.4
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.7e-49 199.9 193 61.1
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 3.8e-49 198.7 188 63.3
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.4e-48 196.1 188 62.2
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 3.5e-47 192.2 194 58.2
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 6.7e-46 188.0 208 57.7
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 3.3e-45 185.7 190 56.3
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 9.6e-45 184.1 189 58.2
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.6e-44 183.3 194 56.7
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 2.8e-44 182.6 182 62.6
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 2.8e-44 182.6 192 57.8
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 6.2e-44 181.4 194 55.2
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 8.1e-44 181.0 190 62.1
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.1e-43 180.6 186 59.1
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 2.6e-42 176.0 184 57.1
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 3.4e-42 175.6 184 58.2
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 4.5e-42 175.3 190 55.8
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 5.8e-42 174.9 211 53.6
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 1.0e-41 174.1 205 54.6
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 1.3e-41 173.7 194 54.6
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.3e-41 173.7 190 57.4
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.2e-41 172.9 186 59.7
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.2e-41 172.9 186 59.7
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 2.9e-41 172.6 186 58.6
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 3.8e-41 172.2 207 51.2
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 8.4e-41 171.0 180 57.2
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 8.4e-41 171.0 215 48.8
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.1e-40 170.6 183 56.3
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 3.2e-40 169.1 196 51.0
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 5.5e-40 168.3 180 54.4
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 7.1e-40 167.9 184 57.1
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 9.3e-40 167.5 184 57.1
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 9.3e-40 167.5 180 56.1
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 1.2e-39 167.2 184 56.5
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.6e-39 166.8 186 57.0
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 2.1e-39 166.4 215 54.4
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.1e-39 166.4 186 59.1
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 4.6e-39 165.2 192 55.2
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 6.0e-39 164.9 206 50.0
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 1.0e-38 164.1 184 56.5
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 1.0e-38 164.1 184 56.5
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 1.0e-38 164.1 184 56.5
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 1.3e-38 163.7 182 51.6
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 1.3e-38 163.7 202 52.5
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.3e-38 162.9 185 57.3
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.3e-38 162.9 185 57.3
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 2.3e-38 162.9 192 55.7
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 3.0e-38 162.5 189 56.6
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 3.0e-38 162.5 180 59.4
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 3.9e-38 162.2 201 52.2
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 6.7e-38 161.4 185 56.8
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 8.7e-38 161.0 188 54.3
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 8.7e-38 161.0 183 54.6
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 4.3e-37 158.7 180 54.4
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 5.7e-37 158.3 190 48.9
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 7.4e-37 157.9 181 50.8
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 7.4e-37 157.9 219 48.9
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 1.3e-36 157.1 166 57.2
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.3e-36 157.1 212 50.5
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 2.1e-36 156.4 180 53.9
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.8e-36 156.0 217 48.8
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.7e-36 155.6 213 49.3
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 6.2e-36 154.8 211 50.2
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 1.4e-35 153.7 206 49.0
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 1.8e-35 153.3 225 44.4
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 3.1e-35 152.5 195 50.3
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 5.3e-35 151.8 211 46.9
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 6.9e-35 151.4 208 46.2
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 5.8e-34 148.3 208 49.5
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 7.6e-34 147.9 195 51.3
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 2.2e-33 146.4 211 50.2
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 6.5e-33 144.8 209 48.8
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 1.1e-32 144.1 173 52.0
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.4e-32 143.7 197 47.7
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 1.9e-32 143.3 209 46.9
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 2.5e-32 142.9 191 50.3
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 4.2e-32 142.1 160 55.0
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 4.2e-32 142.1 212 45.8
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 5.5e-32 141.7 183 45.9
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 5.5e-32 141.7 204 45.1
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 5.5e-32 141.7 202 45.5
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 7.2e-32 141.4 184 47.8
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 9.3e-32 141.0 213 47.9
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 9.3e-32 141.0 202 47.0
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 2.1e-31 139.8 210 46.2
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 2.1e-31 139.8 177 52.0
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 2.1e-31 139.8 202 47.5
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.7e-31 139.4 198 46.0
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.7e-31 139.4 211 44.1
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 4.6e-31 138.7 159 54.7
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 4.6e-31 138.7 177 52.5
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 6.1e-31 138.3 215 43.7
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 1.0e-30 137.5 159 54.7
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 3.0e-30 136.0 184 50.0
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 3.0e-30 136.0 203 47.8
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 3.9e-30 135.6 212 42.9
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 5.1e-30 135.2 185 47.6
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 8.7e-30 134.4 186 46.2
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.1e-29 134.0 194 46.4
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 2.8e-28 129.4 203 42.9
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 3.7e-28 129.0 217 40.6
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 4.8e-28 128.6 240 39.6
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 6.3e-28 128.3 211 40.8
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 1.1e-27 127.5 206 44.2
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 1.8e-27 126.7 168 51.8
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 2.0e-26 123.2 219 39.3
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 3.4e-26 122.5 183 44.8
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 5.9e-26 121.7 159 51.6
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 7.7e-26 121.3 210 40.5
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 1.0e-25 120.9 189 46.6
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.2e-25 119.8 184 40.2
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 3.8e-25 119.0 184 44.0
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 8.5e-25 117.9 202 43.1
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 1.1e-24 117.5 210 41.0
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.4e-24 117.1 195 47.2
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 1.9e-24 116.7 187 44.9
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 2.5e-24 116.3 194 43.3
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 3.2e-24 115.9 189 41.3
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 3.2e-24 115.9 208 42.8
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 5.5e-24 115.2 84 69.0
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 7.2e-24 114.8 185 43.2
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.2e-23 114.0 184 39.7
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 1.6e-23 113.6 184 43.5
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 3.6e-23 112.5 206 37.4
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 3.6e-23 112.5 182 41.2
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 4.6e-23 112.1 194 41.2
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 6.1e-23 111.7 234 38.0
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 1.0e-22 110.9 190 42.6
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 1.0e-22 110.9 190 42.6
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 1.0e-22 110.9 190 42.6
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 6.7e-22 108.2 154 47.4
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 8.8e-22 107.8 187 41.2
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 4.3e-21 105.5 249 33.3
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 7.4e-21 104.8 113 59.3
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.7e-20 103.6 102 56.9
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 2.8e-20 102.8 200 37.5
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 2.8e-20 102.8 200 36.5
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 6.3e-20 101.7 160 42.5
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 6.3e-20 101.7 160 42.5
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 1.1e-19 100.9 160 43.1
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 1.1e-19 100.9 160 43.1
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 6.9e-19 98.2 160 41.9
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.7e-17 93.6 217 36.9
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 2.2e-17 93.2 120 52.5
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 5.5e-16 88.6 70 61.4
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 9.4e-16 87.8 181 43.6
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 2.1e-15 86.7 225 32.0
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 2.1e-15 86.7 180 37.2
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 1.0e-14 84.3 186 36.0
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 1.0e-14 84.3 196 32.7
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 6.7e-14 81.6 154 38.3
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 1.4e-11 73.9 181 33.7
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 3.1e-11 72.8 196 37.8
Os08g0539200 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 6.5e-09 65.1 149 29.5
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 6.5e-09 65.1 175 35.4
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 1.1e-08 64.3 184 29.9
Oeu035281.1 Olea europaea HOM05D004039 ORTHO05D004573 1.5e-08 63.9 150 32.7
Oeu062519.1 Olea europaea HOM05D051843 ORTHO05D004573 2.5e-08 63.2 171 32.2
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 5.5e-08 62.0 57 57.9
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 1.6e-07 60.5 167 32.9
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 2.1e-07 60.1 193 32.6
EL10Ac6g13908 Beta vulgaris HOM05D029470 ORTHO05D026515 2.7e-07 59.7 207 31.4
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.7e-07 59.7 182 30.8
CDE07G0150 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 8.0e-07 58.2 119 38.7
Zm00001eb359900 Zea mays HOM05D015480 ORTHO05D019326 1.4e-06 57.4 197 26.4
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 8.8e-06 54.7 172 30.2


User provided reference genes

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