Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 2232.6 1174 100.0
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 2102.8 1121 98.6
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1849.3 1133 85.5
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1843.2 1130 85.4
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1792.7 1131 82.1
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1780.8 1129 82.1
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1780.0 1128 82.2
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1774.2 1131 81.9
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1773.8 1136 80.5
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1770.0 1137 80.4
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1769.2 1139 81.8
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1767.7 1125 81.9
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1765.4 1128 81.6
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1763.4 1138 80.1
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1763.4 1125 81.2
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1761.9 1129 81.1
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1758.4 1128 81.5
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1753.8 1125 80.6
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1752.3 1128 80.6
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1749.6 1128 79.5
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1748.8 1127 79.7
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1745.3 1128 79.3
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1744.9 1137 79.9
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1743.0 1128 79.3
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1741.9 1128 78.9
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1733.0 1132 80.1
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1727.2 1129 79.9
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1725.3 1141 79.4
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1723.4 1126 79.8
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1722.6 1133 79.5
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1721.1 1132 79.6
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1719.9 1125 80.3
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1714.1 1126 78.8
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1709.1 1127 78.7
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1703.0 1135 77.9
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1703.0 1179 75.8
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1701.4 1130 78.0
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1700.3 1127 77.6
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1699.5 1132 78.1
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1697.2 1127 77.4
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1691.8 1102 80.0
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1669.1 1125 77.2
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1666.7 1131 76.8
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1666.4 1128 77.3
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1666.0 1127 76.8
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1665.2 1140 76.5
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1664.8 1140 76.8
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1657.1 1171 74.3
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1654.8 1133 74.8
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1649.8 1127 76.1
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1649.4 1128 76.2
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1642.1 1125 75.2
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1637.1 1136 74.9
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1622.4 1142 74.3
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1621.3 1128 75.3
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1621.3 1130 75.1
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1616.7 1133 74.0
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1614.4 1136 73.8
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1613.6 1128 74.6
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1612.8 1126 75.3
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1612.0 1142 74.5
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1607.4 1134 73.1
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1605.1 1127 73.6
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1604.3 1148 73.7
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1604.3 1148 73.7
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1599.7 1140 72.9
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1591.6 1127 73.2
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1590.9 1027 79.6
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1587.8 1010 82.4
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1585.5 1132 73.2
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1584.3 1138 71.8
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1575.8 1138 71.8
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1572.8 1130 71.9
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1572.4 1130 71.5
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1569.7 1138 72.1
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1568.9 1130 72.0
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1566.6 1098 73.4
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1566.6 1128 71.8
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1560.8 1131 71.3
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1560.0 1130 71.0
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1558.1 1071 75.6
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1555.8 1129 70.4
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1555.4 1131 71.2
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1554.3 1131 70.9
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1552.3 1131 70.8
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1551.6 1131 71.3
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1548.5 1128 71.1
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1539.2 1130 69.8
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1536.5 1129 69.4
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1536.5 1130 69.7
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1534.2 1078 73.3
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1532.7 1032 75.7
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1524.6 1129 69.0
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1521.5 1129 68.8
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1521.1 921 84.7
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1460.3 926 81.0
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1448.3 1126 68.7
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1444.5 1126 68.1
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1416.4 1143 66.1
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1412.9 1091 68.9
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1386.7 1118 64.5
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1364.7 1105 64.3
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1338.9 891 76.3
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1337.4 1089 62.7
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1313.1 883 76.3
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1238.0 823 79.5
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1144.0 925 65.3
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1116.3 792 75.8
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 1090.1 1107 52.3
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 0.0e+00 1078.2 1089 51.1
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 5.5e-303 1044.6 669 79.7
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 1.0e-301 1040.4 1073 49.0
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 2.5e-295 1019.2 1066 50.5
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 2.0e-292 1009.6 760 68.3
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 1.7e-248 863.6 603 74.8
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 1.4e-242 844.0 929 52.6
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 5.4e-226 788.9 1103 42.5
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 2.7e-217 760.0 636 62.6
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 4.2e-170 603.2 366 80.6
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 2.1e-161 574.3 422 74.4
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 5.4e-141 506.5 436 66.1
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 1.3e-123 448.7 354 64.7
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 5.3e-96 357.1 320 62.5
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 6.9e-96 356.7 313 63.9
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 8.7e-91 339.7 1222 28.5
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 5.7e-90 337.0 1149 28.8
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 7.2e-85 320.1 353 59.2
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 1.1e-82 312.8 364 48.1
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 7.0e-72 276.9 326 50.0
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 1.2e-63 249.6 319 49.8
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 6.2e-36 157.5 100 82.0
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 3.1e-35 155.2 151 64.9
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 1.7e-33 149.4 110 77.3
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 7.8e-31 140.6 641 23.7
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 1.8e-27 129.4 86 77.9
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 8.9e-27 127.1 69 82.6
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 1.5e-26 126.3 86 76.7
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 2.6e-26 125.6 68 82.4
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 4.6e-15 88.2 80 71.2
Lj2g0025677 Lotus japonicus HOM05D005483 ORTHO05D007091 1.3e-06 60.1 75 45.3
RcHm_v2.0_Chr0c29g0501111 Rosa chinensis HOM05D005483 ORTHO05D000581 2.3e-06 59.3 45 71.1


User provided reference genes

Program Settings