Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 0.0e+00 1179.9 592 100.0
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 0.0e+00 1158.3 590 98.1
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 6.0e-298 1026.9 591 87.1
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 4.7e-295 1017.3 590 85.9
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 3.4e-285 984.6 593 82.0
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 3.2e-283 978.0 593 81.3
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 1.8e-281 972.2 592 82.1
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 2.1e-279 965.3 595 80.7
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 8.1e-279 963.4 593 81.8
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 3.1e-278 961.4 591 81.7
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 1.5e-277 959.1 593 81.6
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 1.3e-276 956.1 594 80.3
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 1.7e-276 955.7 592 79.9
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 3.8e-276 954.5 593 80.9
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 3.8e-276 954.5 593 81.1
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 7.1e-275 950.3 596 79.7
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.5e-272 942.6 595 79.0
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 1.3e-271 939.5 591 79.7
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 3.7e-271 937.9 593 78.9
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 4.8e-271 937.6 607 78.6
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 1.4e-270 936.0 593 79.4
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 1.2e-269 932.9 581 80.6
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 1.2e-269 932.9 590 79.7
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 1.5e-269 932.6 594 78.6
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 4.5e-269 931.0 592 78.5
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 5.5e-267 924.1 591 78.2
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 4.6e-266 921.0 590 78.3
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.0e-265 919.8 578 79.6
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 3.0e-265 918.3 596 78.7
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 3.0e-265 918.3 635 74.5
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 4.3e-264 914.4 593 76.7
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 4.3e-264 914.4 594 76.8
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 4.3e-264 914.4 593 76.4
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 5.7e-264 914.1 590 76.3
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 1.4e-262 909.4 593 76.7
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 2.4e-262 908.7 591 76.8
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 4.1e-262 907.9 596 77.3
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 5.3e-262 907.5 597 76.5
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 5.3e-262 907.5 597 75.9
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 9.0e-262 906.7 596 76.5
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 9.0e-262 906.7 598 75.8
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 9.0e-262 906.7 592 77.9
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 2.0e-261 905.6 598 76.1
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 4.5e-261 904.4 593 76.9
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 7.6e-261 903.7 597 75.5
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 1.0e-260 903.3 599 76.1
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 1.0e-260 903.3 594 76.8
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 8.5e-260 900.2 589 76.4
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 3.2e-259 898.3 602 75.7
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 3.2e-259 898.3 594 76.1
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 3.2e-259 898.3 596 76.7
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 4.2e-259 897.9 601 76.2
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 4.2e-259 897.9 601 76.2
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.2e-258 896.3 596 76.8
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 2.7e-258 895.2 600 75.5
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 2.7e-258 895.2 596 75.3
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 6.1e-258 894.0 591 75.0
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 7.9e-258 893.6 595 76.3
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 6.7e-257 890.6 594 74.9
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.5e-256 889.4 627 73.5
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 2.5e-256 888.6 601 74.5
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 7.4e-256 887.1 592 76.4
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 1.1e-254 883.2 588 76.5
Cc04_g11160 Coffea canephora HOM05D005895 ORTHO05D007916 1.4e-254 882.9 563 78.3
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 3.1e-254 881.7 574 76.1
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 6.5e-252 874.0 598 73.7
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 1.4e-251 872.8 591 73.6
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 2.5e-251 872.1 593 74.7
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 7.2e-251 870.5 592 74.7
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 4.7e-250 867.8 593 74.5
AUR62024296 Chenopodium quinoa HOM05D005895 ORTHO05D007916 7.9e-250 867.1 594 73.9
AUR62005446 Chenopodium quinoa HOM05D005895 ORTHO05D007916 1.8e-249 865.9 601 72.9
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 2.3e-249 865.5 598 73.2
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 1.1e-248 863.2 614 72.1
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 1.1e-248 863.2 592 73.6
ECA233G5390 Erigeron canadensis HOM05D005895 ORTHO05D007916 5.7e-248 860.9 529 79.4
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 3.7e-247 858.2 595 74.5
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 1.1e-246 856.7 590 73.6
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.8e-246 855.9 630 71.6
Manes.12G024300 Manihot esculenta HOM05D005895 ORTHO05D007916 2.6e-245 852.0 518 82.0
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 3.4e-245 851.7 592 74.7
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 7.7e-245 850.5 601 72.5
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 2.5e-243 845.5 592 72.3
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 2.3e-241 839.0 590 73.7
Aqoxy3G01161 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 5.9e-237 824.3 535 76.1
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 8.5e-236 820.5 590 71.2
Manes.13G025800 Manihot esculenta HOM05D005895 ORTHO05D007916 5.5e-235 817.8 522 80.1
HPP92_003081 Vanilla planifolia HOM05D005895 ORTHO05D007916 8.2e-231 803.9 527 76.3
Os02g0131200 Oryza sativa ssp. japonica HOM05D005895 ORTHO05D007916 1.8e-230 802.7 526 76.6
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 1.1e-227 793.5 547 73.5
ATR0585G083 Amborella trichopoda HOM05D005895 ORTHO05D007916 2.5e-227 792.3 571 70.8
Phvul.003G063900 Phaseolus vulgaris HOM05D005895 ORTHO05D007916 3.6e-226 788.5 463 81.9
Zm00001eb231230 Zea mays HOM05D005895 ORTHO05D007916 3.6e-226 788.5 545 72.8
arahy.Tifrunner.gnm1.ann1.0I87EX Arachis hypogaea HOM05D005895 ORTHO05D007916 4.7e-226 788.1 523 75.5
Ca_22578_v3 Cicer arietinum L. HOM05D005895 ORTHO05D007916 2.4e-222 775.8 520 73.1
Psat0s3772g0040 Pisum sativum HOM05D005895 ORTHO05D007916 7.0e-222 774.2 520 73.5
MSTRG.2417 Avicennia marina HOM05D005895 ORTHO05D007916 1.1e-214 750.4 444 81.1
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 3.1e-214 748.8 591 68.5
Sed0009772 Sechium edule HOM05D005895 ORTHO05D007916 5.9e-213 744.6 491 76.8
THA.LOC104818151 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 1.7e-212 743.0 497 75.7
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 3.6e-210 735.3 532 71.1
Gohir.A03G136300 Gossypium hirsutum HOM05D005895 ORTHO05D007916 4.7e-210 734.9 499 73.5
Mapoly0129s0050 Marchantia polymorpha HOM05D005895 ORTHO05D007916 8.0e-202 707.6 509 68.4
unitig_52.g17177 Utricularia gibba HOM05D005895 ORTHO05D007916 1.3e-196 690.3 519 66.3
Pp3c12_14340 Physcomitrium patens HOM05D005895 ORTHO05D007916 1.7e-196 689.9 505 68.1
Zm00001eb209010 Zea mays HOM05D005895 ORTHO05D007916 3.6e-194 682.2 553 64.6
Peaxi162Scf01242g00143 Petunia axillaris HOM05D005895 ORTHO05D007916 7.3e-187 657.9 448 74.3
Dinv24803 Davidia involucrata HOM05D005895 ORTHO05D007916 2.0e-184 649.8 387 82.9
SMO119G0060 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 3.8e-183 645.6 518 64.1
AagrBONN_evm.TU.Sc2ySwM_368.1304 Anthoceros agrestis HOM05D005895 ORTHO05D007916 3.8e-167 592.4 447 65.1
Pp3c10_19590 Physcomitrium patens HOM05D005895 ORTHO05D007916 1.9e-126 457.2 324 67.3
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 3.2e-97 360.1 409 49.6
FAN18G3006 Fragaria x ananassa HOM05D005895 ORTHO05D007916 8.0e-93 345.5 200 82.0
CBR_g37586 Chara braunii HOM05D000019 ORTHO05D000048 9.9e-67 258.8 274 51.5
CBR_g37584 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-59 233.8 208 56.7
Peaxi162Scf02256g00001 Petunia axillaris HOM05D005895 ORTHO05D007916 2.3e-55 221.1 143 76.9
SEGI_05407 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 3.3e-54 217.2 141 73.8
SEGI_24305 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 9.3e-41 172.6 100 76.0
BcaB08g34808 Brassica carinata HOM05D005895 ORTHO05D007916 3.5e-40 170.6 102 78.4
SEGI_08481 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 4.5e-35 153.7 113 63.7
DCAR_028023 Daucus carota HOM05D005895 ORTHO05D007916 2.4e-28 131.3 106 63.2
Rhsim12G0041200 Rhododendron simsii HOM05D005895 ORTHO05D007916 1.4e-25 122.1 76 73.7
CSS0038190 Camellia sinensis var. sinensis HOM05D033929 ORTHO05D026310 1.9e-25 121.7 119 58.8
SMO163G0072 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 4.6e-24 117.1 176 42.0
Ah.07g201790 Amaranthus hybridus HOM05D005895 ORTHO05D007916 1.4e-23 115.5 66 77.3
BcaB05g24594 Brassica carinata HOM05D005895 ORTHO05D012801 5.1e-23 113.6 106 56.6
A02p16670 Brassica napus HOM05D005895 ORTHO05D012801 3.4e-19 100.9 63 74.6
BraA02t06723Z Brassica rapa HOM05D005895 ORTHO05D012801 3.4e-19 100.9 63 74.6
C02p27930 Brassica napus HOM05D005895 ORTHO05D012801 5.0e-18 97.1 66 69.7
BolC2t08838H Brassica oleracea HOM05D005895 ORTHO05D012801 5.0e-18 97.1 66 69.7
DCAR_029453 Daucus carota HOM05D005895 ORTHO05D007916 2.1e-16 91.7 68 64.7
Gorai.012G172500 Gossypium raimondii HOM05D005895 ORTHO05D007916 7.9e-16 89.7 54 79.6
Actinidia08142 Actinidia chinensis HOM05D005895 ORTHO05D026310 1.4e-15 89.0 113 48.7
CDE06G1756 Ceratophyllum demersum HOM05D005895 ORTHO05D007916 6.7e-07 60.1 124 36.3
SEGI_38231 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 3.3e-06 57.8 38 68.4


User provided reference genes

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