Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 5.8e-132 474.2 230 100.0
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 4.9e-131 471.1 230 99.1
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 6.2e-118 427.6 230 87.8
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 2.6e-116 422.2 227 87.7
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 4.5e-116 421.4 224 88.4
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 1.1e-114 416.8 226 86.3
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 2.5e-114 415.6 226 85.8
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 3.2e-114 415.2 226 86.3
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 4.2e-114 414.8 225 85.8
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 4.2e-114 414.8 227 85.9
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 4.2e-114 414.8 228 85.1
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 9.3e-114 413.7 224 87.5
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 1.2e-113 413.3 225 87.1
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 2.7e-113 412.1 227 85.0
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 3.5e-113 411.8 225 85.3
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 4.6e-113 411.4 224 86.2
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 6.0e-113 411.0 225 87.1
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 6.0e-113 411.0 226 85.0
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 1.0e-112 410.2 224 86.2
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 1.3e-112 409.8 226 84.1
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 1.8e-112 409.5 223 85.7
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 2.3e-112 409.1 221 86.9
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 2.3e-112 409.1 221 86.9
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 2.3e-112 409.1 226 84.1
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 2.3e-112 409.1 225 85.3
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.0e-112 408.7 226 84.1
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 3.9e-112 408.3 229 83.4
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 6.7e-112 407.5 227 85.0
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 6.7e-112 407.5 229 83.0
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 8.7e-112 407.1 224 85.3
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 1.1e-111 406.8 223 85.2
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 1.1e-111 406.8 225 85.3
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 1.1e-111 406.8 229 83.4
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 1.1e-111 406.8 229 83.4
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 1.9e-111 406.0 229 82.5
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 1.9e-111 406.0 227 83.3
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 2.5e-111 405.6 225 85.3
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.5e-111 405.6 226 83.6
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 3.3e-111 405.2 226 83.6
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 9.7e-111 403.7 227 84.1
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 9.7e-111 403.7 225 85.3
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 1.6e-110 402.9 221 86.4
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.6e-110 402.9 224 85.3
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.6e-110 402.9 224 86.6
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 1.6e-110 402.9 224 85.3
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 2.2e-110 402.5 221 89.1
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 2.2e-110 402.5 224 86.2
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 4.8e-110 401.4 224 84.8
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 1.1e-109 400.2 224 83.9
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 1.1e-109 400.2 221 84.6
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 1.1e-109 400.2 225 82.7
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 1.8e-109 399.4 228 81.6
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 2.4e-109 399.1 224 84.4
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 2.4e-109 399.1 221 83.3
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 2.4e-109 399.1 224 86.2
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 3.1e-109 398.7 221 85.5
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 4.1e-109 398.3 223 83.4
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 5.3e-109 397.9 224 86.6
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 5.3e-109 397.9 226 81.9
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 5.3e-109 397.9 229 81.7
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 6.9e-109 397.5 225 82.2
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 9.0e-109 397.1 221 85.5
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 1.2e-108 396.7 218 85.8
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 2.0e-108 396.0 224 83.5
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.0e-108 396.0 223 84.3
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 2.6e-108 395.6 224 84.4
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 2.6e-108 395.6 223 83.9
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 2.6e-108 395.6 224 83.5
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 2.6e-108 395.6 223 83.9
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 2.6e-108 395.6 223 83.9
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.6e-108 395.6 224 83.9
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 5.9e-108 394.4 224 83.0
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 7.7e-108 394.0 226 81.9
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 1.0e-107 393.7 224 85.7
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 1.0e-107 393.7 225 81.3
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 1.3e-107 393.3 221 82.4
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 1.7e-107 392.9 221 82.4
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 1.7e-107 392.9 224 82.6
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 1.7e-107 392.9 237 79.7
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 2.2e-107 392.5 221 83.3
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 2.9e-107 392.1 211 86.7
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 6.5e-107 391.0 224 83.9
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 8.5e-107 390.6 251 75.3
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 1.1e-106 390.2 224 81.7
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 1.4e-106 389.8 224 81.2
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.4e-106 389.8 211 86.3
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 1.9e-106 389.4 225 81.3
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 2.5e-106 389.0 225 81.3
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 2.5e-106 389.0 223 83.0
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 4.2e-106 388.3 224 81.7
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 4.2e-106 388.3 224 82.1
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 5.5e-106 387.9 223 82.5
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.5e-106 387.9 224 82.1
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 7.2e-106 387.5 251 74.9
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 9.4e-106 387.1 225 81.3
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 1.6e-105 386.3 222 81.5
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.1e-105 386.0 221 81.4
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 2.1e-105 386.0 224 81.2
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 2.7e-105 385.6 221 80.5
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 4.6e-105 384.8 225 80.4
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 6.1e-105 384.4 224 81.2
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 6.1e-105 384.4 224 81.2
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 6.1e-105 384.4 226 80.5
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 1.0e-104 383.6 224 80.8
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.4e-104 383.3 222 82.0
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 1.4e-104 383.3 225 80.9
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.8e-104 382.9 225 80.4
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 8.8e-104 380.6 221 80.1
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 1.5e-103 379.8 224 79.5
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.8e-102 375.6 279 68.8
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 1.1e-101 373.6 224 78.6
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 1.4e-101 373.2 224 81.7
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 2.4e-101 372.5 226 75.7
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 6.9e-101 370.9 216 79.6
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 1.5e-100 369.8 226 75.2
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.1e-98 363.6 216 77.8
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 2.3e-96 355.9 208 82.2
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.8e-93 346.3 218 71.1
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 5.5e-90 334.7 228 71.1
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 5.2e-88 328.2 224 67.9
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 7.4e-87 324.3 224 66.1
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 2.4e-85 319.3 218 65.6
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 3.5e-84 315.5 224 65.2
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 1.1e-77 293.9 164 86.6
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 1.7e-75 286.6 169 78.7
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 3.8e-75 285.4 161 85.7
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.6e-71 272.7 153 83.0
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.3e-70 270.4 162 77.2
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 5.9e-68 261.5 219 56.6
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 1.4e-64 250.4 131 85.5
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.1e-61 240.7 163 71.8
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 4.1e-61 238.8 218 52.8
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 5.9e-60 235.0 211 54.5
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 2.8e-57 226.1 128 80.5
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 3.4e-55 219.2 214 49.1
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 7.0e-53 211.5 148 75.0
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.7e-51 206.8 115 80.9
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 1.7e-51 206.8 111 88.3
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 2.5e-50 203.0 112 81.2
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 3.3e-42 176.0 130 60.0
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 2.9e-38 162.9 88 83.0
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 4.9e-38 162.2 102 76.5
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 8.3e-38 161.4 220 40.0
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 5.4e-29 132.1 97 72.2
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.9e-26 123.6 77 84.4
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 3.3e-26 122.9 134 47.8
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 8.1e-25 118.2 83 63.9
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.1e-24 117.9 66 81.8
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.4e-24 117.5 75 77.3
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 4.4e-23 112.5 61 88.5
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 7.1e-21 105.1 61 86.9
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 7.1e-21 105.1 59 74.6
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 1.2e-20 104.4 61 85.2
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 7.8e-20 101.7 61 83.6
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 6.6e-19 98.6 64 75.0
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 2.5e-18 96.7 64 76.6
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 8.1e-17 91.7 54 77.8
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 4.0e-16 89.4 128 45.3
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 9.0e-16 88.2 54 85.2
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 2.2e-14 83.6 100 47.0
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 7.1e-13 78.6 50 76.0
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 3.4e-07 59.7 43 74.4
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 1.0e-06 58.2 39 69.2
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 2.2e-06 57.0 35 77.1


User provided reference genes

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