Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_11822 Corylus avellana HOM05D003083 ORTHO05D003466 4.4e-68 261.2 132 100.0
TAR622G0202 Trochodendron aralioides HOM05D003083 ORTHO05D003466 1.1e-21 107.1 117 56.4
CiPaw.05G118500 Carya illinoinensis HOM05D003083 ORTHO05D003466 1.2e-20 103.6 80 70.0
CiPaw.06G097300 Carya illinoinensis HOM05D003083 ORTHO05D003466 1.2e-20 103.6 80 71.2
Actinidia31913 Actinidia chinensis HOM05D003083 ORTHO05D003466 4.5e-20 101.7 80 66.2
Dinv27411 Davidia involucrata HOM05D003083 ORTHO05D003466 1.0e-19 100.5 80 66.2
QL03p046607 Quercus lobata HOM05D003083 ORTHO05D003466 1.3e-19 100.1 80 70.0
GSVIVG01010154001 Vitis vinifera HOM05D003083 ORTHO05D003466 1.3e-19 100.1 80 68.8
Rhsim12G0066500 Rhododendron simsii HOM05D003083 ORTHO05D003466 1.7e-19 99.8 86 64.0
arahy.Tifrunner.gnm1.ann1.MMN7ZE Arachis hypogaea HOM05D003083 ORTHO05D003466 2.2e-19 99.4 80 67.5
QL11p007130 Quercus lobata HOM05D003083 ORTHO05D003466 2.9e-19 99.0 80 67.5
CSS0044755 Camellia sinensis var. sinensis HOM05D003083 ORTHO05D003466 3.8e-19 98.6 80 63.8
COL.COLO4_27714 Corchorus olitorius HOM05D003083 ORTHO05D003466 6.5e-19 97.8 80 66.2
Sc04g0007060 Simmondsia chinensis HOM05D003083 ORTHO05D003466 6.5e-19 97.8 80 66.2
Duzib248G0341 Durio zibethinus HOM05D003083 ORTHO05D003466 8.5e-19 97.4 86 65.1
Thecc.02G315000 Theobroma cacao HOM05D003083 ORTHO05D003466 8.5e-19 97.4 80 67.5
Gohir.A04G144900 Gossypium hirsutum HOM05D003083 ORTHO05D003466 1.1e-18 97.1 80 65.0
MELO3C004949.2 Cucumis melo HOM05D003083 ORTHO05D003466 1.4e-18 96.7 80 65.0
MELO3C005163.2 Cucumis melo HOM05D003083 ORTHO05D003466 1.4e-18 96.7 80 65.0
CsaV3_1G013550 Cucumis sativus L. HOM05D003083 ORTHO05D003466 1.4e-18 96.7 80 65.0
DCAR_023722 Daucus carota HOM05D003083 ORTHO05D003466 1.4e-18 96.7 80 62.5
Dinv16558 Davidia involucrata HOM05D003083 ORTHO05D003466 1.4e-18 96.7 80 65.0
Gohir.D04G189400 Gossypium hirsutum HOM05D003083 ORTHO05D003466 1.4e-18 96.7 80 65.0
Gorai.012G184700 Gossypium raimondii HOM05D003083 ORTHO05D003466 1.4e-18 96.7 80 65.0
Manes.06G076700 Manihot esculenta HOM05D003083 ORTHO05D003466 1.4e-18 96.7 80 66.2
Ciclev10031785m.g Citrus clementina HOM05D003083 ORTHO05D003466 1.9e-18 96.3 80 63.8
FvH4_4g28600 Fragaria vesca HOM05D003083 ORTHO05D003466 1.9e-18 96.3 80 65.0
THA.LOC104825723 Tarenaya hassleriana HOM05D003083 ORTHO05D003466 1.9e-18 96.3 80 65.0
Lalb_Chr17g0341721 Lupinus albus HOM05D003083 ORTHO05D003466 2.5e-18 95.9 80 65.0
Prupe.7G262100 Prunus persica HOM05D003083 ORTHO05D003466 2.5e-18 95.9 80 66.2
BcaC05g25248 Brassica carinata HOM05D003083 ORTHO05D003466 3.2e-18 95.5 80 63.8
C05p11330 Brassica napus HOM05D003083 ORTHO05D003466 3.2e-18 95.5 80 63.8
BolC5t29882H Brassica oleracea HOM05D003083 ORTHO05D003466 3.2e-18 95.5 80 63.8
BraA06t24152Z Brassica rapa HOM05D003083 ORTHO05D003466 3.2e-18 95.5 80 63.8
Eucgr.G02395 Eucalyptus grandis HOM05D003083 ORTHO05D003466 3.2e-18 95.5 80 63.8
Lalb_Chr08g0245781 Lupinus albus HOM05D003083 ORTHO05D003466 3.2e-18 95.5 80 65.0
MD12G1007000 Malus domestica HOM05D003083 ORTHO05D003466 3.2e-18 95.5 80 65.0
MD16G1057500 Malus domestica HOM05D003083 ORTHO05D003466 3.2e-18 95.5 80 65.0
Prupe.8G087200 Prunus persica HOM05D003083 ORTHO05D003466 3.2e-18 95.5 80 66.2
Sp2g14850 Schrenkiella parvula HOM05D003083 ORTHO05D003466 3.2e-18 95.5 80 63.8
Aa31LG2G6730 Aethionema arabicum HOM05D003083 ORTHO05D003466 4.2e-18 95.1 80 63.8
BcaC07g41635 Brassica carinata HOM05D003083 ORTHO05D003466 4.2e-18 95.1 80 63.8
A09p62930 Brassica napus HOM05D003083 ORTHO05D003466 4.2e-18 95.1 80 63.8
C08p46370 Brassica napus HOM05D003083 ORTHO05D003466 4.2e-18 95.1 80 63.8
BolC8t52186H Brassica oleracea HOM05D003083 ORTHO05D003466 4.2e-18 95.1 80 63.8
BraA09t41651Z Brassica rapa HOM05D003083 ORTHO05D003466 4.2e-18 95.1 80 63.8
CsaV3_5G024400 Cucumis sativus L. HOM05D003083 ORTHO05D003466 4.2e-18 95.1 80 63.8
Sp1g11950 Schrenkiella parvula HOM05D003083 ORTHO05D003466 4.2e-18 95.1 80 65.0
THA.LOC104805232 Tarenaya hassleriana HOM05D003083 ORTHO05D003466 4.2e-18 95.1 80 65.0
A02p33890 Brassica napus HOM05D003083 ORTHO05D003466 5.5e-18 94.7 80 63.8
BraA02t08407Z Brassica rapa HOM05D003083 ORTHO05D003466 5.5e-18 94.7 80 63.8
Ca_14133_v3 Cicer arietinum L. HOM05D003083 ORTHO05D003466 5.5e-18 94.7 80 63.8
Nn3g17617 Nelumbo nucifera HOM05D003083 ORTHO05D003466 5.5e-18 94.7 80 65.0
TWI31G0301 Tripterygium wilfordii HOM05D003083 ORTHO05D003466 5.5e-18 94.7 80 63.8
BcaB07g30267 Brassica carinata HOM05D003083 ORTHO05D003466 7.2e-18 94.4 79 64.6
Gohir.A13G092200 Gossypium hirsutum HOM05D003083 ORTHO05D003466 7.2e-18 94.4 80 63.8
Gohir.D13G089125 Gossypium hirsutum HOM05D003083 ORTHO05D003466 7.2e-18 94.4 80 63.8
Gorai.013G102300 Gossypium raimondii HOM05D003083 ORTHO05D003466 7.2e-18 94.4 80 63.8
Manes.14G094200 Manihot esculenta HOM05D003083 ORTHO05D003466 7.2e-18 94.4 80 65.0
PGR119G0526 Punica granatum HOM05D003083 ORTHO05D003466 7.2e-18 94.4 80 62.5
Sed0015771 Sechium edule HOM05D003083 ORTHO05D003466 7.2e-18 94.4 80 65.0
AT3G25585 Arabidopsis thaliana HOM05D003083 ORTHO05D003466 9.4e-18 94.0 80 63.8
BcaB08g34312 Brassica carinata HOM05D003083 ORTHO05D003466 9.4e-18 94.0 80 63.8
Oeu024129.1 Olea europaea HOM05D003083 ORTHO05D003466 9.4e-18 94.0 80 62.5
vmacro01278 Vaccinium macrocarpon HOM05D003083 ORTHO05D003466 9.4e-18 94.0 80 61.2
Aqoxy3G00624 Aquilegia oxysepala HOM05D003083 ORTHO05D003466 1.2e-17 93.6 80 60.0
Aqoxy4G02735 Aquilegia oxysepala HOM05D003083 ORTHO05D003466 1.2e-17 93.6 80 61.2
AL5G14090 Arabidopsis lyrata HOM05D003083 ORTHO05D003466 1.2e-17 93.6 80 63.8
BcaC03g17272 Brassica carinata HOM05D003083 ORTHO05D003466 1.2e-17 93.6 80 63.8
C02p52160 Brassica napus HOM05D003083 ORTHO05D003466 1.2e-17 93.6 80 63.8
BolC2t11301H Brassica oleracea HOM05D003083 ORTHO05D003466 1.2e-17 93.6 80 63.8
FAN17G0824 Fragaria x ananassa HOM05D003083 ORTHO05D003466 1.2e-17 93.6 80 63.8
TWI79G0908 Tripterygium wilfordii HOM05D003083 ORTHO05D003466 1.2e-17 93.6 80 62.5
AL1G25300 Arabidopsis lyrata HOM05D003083 ORTHO05D003466 1.6e-17 93.2 80 63.8
AL990U10010 Arabidopsis lyrata HOM05D003083 ORTHO05D003466 1.6e-17 93.2 80 63.8
AT1G13560 Arabidopsis thaliana HOM05D003083 ORTHO05D003466 1.6e-17 93.2 80 63.8
Carub.0001s1324 Capsella rubella HOM05D003083 ORTHO05D003466 1.6e-17 93.2 80 63.8
Thhalv10007875m.g Eutrema salsugineum HOM05D003083 ORTHO05D003466 1.6e-17 93.2 80 63.8
Lalb_Chr04g0255241 Lupinus albus HOM05D003083 ORTHO05D003466 1.6e-17 93.2 80 63.8
Nn4g23623 Nelumbo nucifera HOM05D003083 ORTHO05D003466 1.6e-17 93.2 80 65.0
TPR.G16711 Trifolium pratense HOM05D003083 ORTHO05D003466 1.6e-17 93.2 80 63.8
Ca_04376_v3 Cicer arietinum L. HOM05D003083 ORTHO05D003466 2.1e-17 92.8 80 62.5
Lj4g0001140 Lotus japonicus HOM05D003083 ORTHO05D003466 2.1e-17 92.8 80 61.2
Medtr3g009730 Medicago truncatula HOM05D003083 ORTHO05D003466 2.1e-17 92.8 80 63.8
ECA232G3768 Erigeron canadensis HOM05D003083 ORTHO05D003466 2.7e-17 92.4 83 57.8
unitig_62.g23706 Utricularia gibba HOM05D003083 ORTHO05D003466 2.7e-17 92.4 80 61.2
Aa31LG1G1360 Aethionema arabicum HOM05D003083 ORTHO05D003466 3.6e-17 92.0 80 62.5
MSTRG.2280 Avicennia marina HOM05D003083 ORTHO05D003466 3.6e-17 92.0 80 62.5
BcaB02g06450 Brassica carinata HOM05D003083 ORTHO05D003466 3.6e-17 92.0 80 62.5
ClCG01G007440 Citrullus lanatus HOM05D003083 ORTHO05D003466 3.6e-17 92.0 79 63.3
Duzib268G0194 Durio zibethinus HOM05D003083 ORTHO05D003466 3.6e-17 92.0 80 62.5
Nitab4.5_0008828g0020 Nicotiana tabacum HOM05D003083 ORTHO05D003466 3.6e-17 92.0 96 57.3
Sed0009989 Sechium edule HOM05D003083 ORTHO05D003466 3.6e-17 92.0 80 63.8
CDE12G0871 Ceratophyllum demersum HOM05D003083 ORTHO05D003466 4.7e-17 91.7 80 58.8
Lsat_1_v5_gn_0_7801 Lactuca sativa HOM05D003083 ORTHO05D003466 4.7e-17 91.7 83 56.6
Peaxi162Scf00402g00512 Petunia axillaris HOM05D003083 ORTHO05D003466 4.7e-17 91.7 80 61.2
FAN22G1434 Fragaria x ananassa HOM05D003083 ORTHO05D003466 6.1e-17 91.3 80 62.5
HanXRQChr11g0321311 Helianthus annuus HOM05D003083 ORTHO05D003466 6.1e-17 91.3 83 57.8
vmacro02058 Vaccinium macrocarpon HOM05D003083 ORTHO05D003466 6.1e-17 91.3 80 60.0
Actinidia11768 Actinidia chinensis HOM05D003083 ORTHO05D003466 8.0e-17 90.9 80 61.2
CSS0020278 Camellia sinensis var. sinensis HOM05D003083 ORTHO05D003466 8.0e-17 90.9 80 61.2
CSS0033249 Camellia sinensis var. sinensis HOM05D003083 ORTHO05D003466 8.0e-17 90.9 80 61.2
CARHR013880 Cardamine hirsuta HOM05D003083 ORTHO05D003466 8.0e-17 90.9 80 61.2
Migut.E00272 Erythranthe guttata HOM05D003083 ORTHO05D003466 8.0e-17 90.9 80 62.5
Medtr6g018970 Medicago truncatula HOM05D003083 ORTHO05D003466 8.0e-17 90.9 80 61.2
PGR102G0378 Punica granatum HOM05D003083 ORTHO05D003466 8.0e-17 90.9 80 63.8
RcHm_v2.0_Chr4g0436691 Rosa chinensis HOM05D003083 ORTHO05D003466 8.0e-17 90.9 80 63.8
TPR.G21637 Trifolium pratense HOM05D003083 ORTHO05D003466 8.0e-17 90.9 80 61.2
BcaC06g31132 Brassica carinata HOM05D003083 ORTHO05D003466 1.0e-16 90.5 80 61.2
BcaC06g33978 Brassica carinata HOM05D003083 ORTHO05D003466 1.0e-16 90.5 80 61.2
A06p42730 Brassica napus HOM05D003083 ORTHO05D003466 1.0e-16 90.5 80 61.2
C07p34400 Brassica napus HOM05D003083 ORTHO05D003466 1.0e-16 90.5 80 61.2
BolC7t43968H Brassica oleracea HOM05D003083 ORTHO05D003466 1.0e-16 90.5 80 61.2
BraA06t27186Z Brassica rapa HOM05D003083 ORTHO05D003466 1.0e-16 90.5 80 61.2
Lj2g0013424 Lotus japonicus HOM05D003083 ORTHO05D003466 1.0e-16 90.5 80 61.2
MBI16_g27904_MAGBIO Magnolia biondii HOM05D003083 ORTHO05D003466 1.0e-16 90.5 80 61.2
THA.LOC104824047 Tarenaya hassleriana HOM05D003083 ORTHO05D003466 1.0e-16 90.5 80 63.8
CDE01G0472 Ceratophyllum demersum HOM05D003083 ORTHO05D003466 1.4e-16 90.1 80 57.5
HanXRQChr11g0342141 Helianthus annuus HOM05D003083 ORTHO05D003466 1.4e-16 90.1 79 59.5
PSO013G0209 Papaver somniferum HOM05D003083 ORTHO05D003466 1.4e-16 90.1 80 62.5
PSO832G2172 Papaver somniferum HOM05D003083 ORTHO05D003466 1.4e-16 90.1 80 62.5
Psat5g231240 Pisum sativum HOM05D003083 ORTHO05D003466 1.4e-16 90.1 80 60.0
Carub.0005s0335 Capsella rubella HOM05D003083 ORTHO05D003466 1.8e-16 89.7 80 62.5
CAN.G184.35 Capsicum annuum HOM05D003083 ORTHO05D003466 1.8e-16 89.7 80 63.8
VMungo1127G0992 Vigna mungo HOM05D003083 ORTHO05D003466 1.8e-16 89.7 80 61.2
Phvul.001G209800 Phaseolus vulgaris HOM05D003083 ORTHO05D003466 2.3e-16 89.4 80 61.2
Glyma.02G128300 Glycine max HOM05D003083 ORTHO05D003466 3.0e-16 89.0 80 61.2
Glyma.12G081900 Glycine max HOM05D003083 ORTHO05D003466 3.0e-16 89.0 80 61.2
Os02g0119800 Oryza sativa ssp. japonica HOM05D003083 ORTHO05D003466 3.0e-16 89.0 80 60.0
Phvul.003G044000 Phaseolus vulgaris HOM05D003083 ORTHO05D003466 3.0e-16 89.0 80 61.2
SHI34639 Sapria himalayana HOM05D003083 ORTHO05D003466 3.0e-16 89.0 85 57.6
Zm00001eb230240 Zea mays HOM05D003083 ORTHO05D003466 3.0e-16 89.0 80 60.0
Atru.chr11.1449 Acer truncatum HOM05D003083 ORTHO05D003466 5.2e-16 88.2 80 60.0
Atru.chr11.1479 Acer truncatum HOM05D003083 ORTHO05D003466 5.2e-16 88.2 80 60.0
Nitab4.5_0000259g0240 Nicotiana tabacum HOM05D003083 ORTHO05D003466 5.2e-16 88.2 80 61.2
Potri.008G109833 Populus trichocarpa HOM05D003083 ORTHO05D003466 5.2e-16 88.2 80 62.5
Potri.T031036 Populus trichocarpa HOM05D003083 ORTHO05D003466 5.2e-16 88.2 80 62.5
Sopen05g006220 Solanum pennellii HOM05D003083 ORTHO05D003466 5.2e-16 88.2 80 61.2
arahy.Tifrunner.gnm1.ann1.UA9SQ6 Arachis hypogaea HOM05D003083 ORTHO05D003466 8.8e-16 87.4 80 61.2
ECA238G1707 Erigeron canadensis HOM05D003083 ORTHO05D003466 8.8e-16 87.4 83 53.0
arahy.Tifrunner.gnm1.ann1.REV2BJ Arachis hypogaea HOM05D003083 ORTHO05D003466 1.1e-15 87.0 79 62.0
AUR62000488 Chenopodium quinoa HOM05D003083 ORTHO05D003466 1.1e-15 87.0 93 54.8
Rhsim11G0182800 Rhododendron simsii HOM05D003083 ORTHO05D003466 1.1e-15 87.0 80 57.5
Cc11_g11100 Coffea canephora HOM05D003083 ORTHO05D003466 1.5e-15 86.7 80 61.2
Lsat_1_v5_gn_2_104520 Lactuca sativa HOM05D003083 ORTHO05D003466 1.5e-15 86.7 80 55.0
HPP92_015061 Vanilla planifolia HOM05D003083 ORTHO05D003466 2.6e-15 85.9 80 57.5
Potri.010G133800 Populus trichocarpa HOM05D003083 ORTHO05D003466 4.4e-15 85.1 80 61.2
Migut.L01127 Erythranthe guttata HOM05D003083 ORTHO05D003466 5.7e-15 84.7 80 58.8
Psat1g085000 Pisum sativum HOM05D003083 ORTHO05D003466 7.4e-15 84.3 80 56.2
A06p09620 Brassica napus HOM05D003083 ORTHO05D003466 9.7e-15 84.0 108 48.1
SGA_v2.0_scaffold36G14506 Striga asiatica HOM05D003083 ORTHO05D003466 9.7e-15 84.0 80 60.0
Gohir.D05G307500 Gossypium hirsutum HOM05D003083 ORTHO05D003466 1.3e-14 83.6 80 58.8
SalBow8G2854 Salvia bowleyana HOM05D003083 ORTHO05D003466 2.2e-14 82.8 80 57.5
SalBow8G2955 Salvia bowleyana HOM05D003083 ORTHO05D003466 2.2e-14 82.8 80 57.5
Sed0026832 Sechium edule HOM05D003083 ORTHO05D003466 2.8e-14 82.4 80 55.0
Gorai.009G327500 Gossypium raimondii HOM05D003083 ORTHO05D003466 3.7e-14 82.0 80 58.8
ATR0691G169 Amborella trichopoda HOM05D003083 ORTHO05D003466 4.8e-14 81.6 80 56.2
CANSAT64G1145 Cannabis sativa HOM05D003083 ORTHO05D003466 6.3e-14 81.3 80 58.8
HanXRQChr02g0036491 Helianthus annuus HOM05D003083 ORTHO05D003466 9.1e-13 77.4 85 50.6
SEGI_32048 Sequoiadendron giganteum HOM05D003083 ORTHO05D003466 1.2e-12 77.0 80 52.5
CsaV3_5G033710 Cucumis sativus L. HOM05D003083 ORTHO05D003466 5.0e-11 71.6 80 48.8
Pp3c14_26200 Physcomitrium patens HOM05D003083 ORTHO05D003466 8.5e-11 70.9 83 48.2
Pp3c17_23500 Physcomitrium patens HOM05D003083 ORTHO05D003466 8.5e-11 70.9 83 49.4
Mapoly0173s0008 Marchantia polymorpha HOM05D003083 ORTHO05D003466 1.5e-10 70.1 79 49.4
ECA233G5252 Erigeron canadensis HOM05D003083 ORTHO05D003466 9.4e-10 67.4 86 44.2
ATR0580G393 Amborella trichopoda HOM05D003083 ORTHO05D003466 1.4e-08 63.5 80 45.0
SMO367G0966 Selaginella moellendorffii HOM05D003083 ORTHO05D003466 1.8e-08 63.2 80 43.8
Hund25153 Selenicereus undatus HOM05D003083 ORTHO05D003466 1.5e-07 60.1 56 62.5
CBR_g8031 Chara braunii HOM05D003083 ORTHO05D003466 5.7e-07 58.2 88 44.3
arahy.Tifrunner.gnm1.ann1.FB1FM8 Arachis hypogaea HOM05D003083 ORTHO05D003466 1.3e-06 57.0 56 58.9
AUR62014363 Chenopodium quinoa HOM05D003083 ORTHO05D003466 2.2e-06 56.2 62 58.1
FAN12G2896 Fragaria x ananassa HOM05D003083 ORTHO05D003466 6.3e-06 54.7 60 55.0
TAR374G1204 Trochodendron aralioides HOM05D003083 ORTHO05D003466 8.2e-06 54.3 142 35.2


User provided reference genes

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