Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 9.9e-65 250.0 127 100.0
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 1.7e-48 196.1 124 84.7
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 7.8e-46 187.2 102 95.1
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 1.3e-43 179.9 97 90.7
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 3.2e-39 165.2 128 70.3
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 1.2e-38 163.3 102 83.3
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 3.3e-36 155.2 109 78.0
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 3.3e-36 155.2 106 76.4
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 2.8e-35 152.1 133 64.7
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 2.8e-35 152.1 133 64.7
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 8.1e-35 150.6 119 68.1
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 1.1e-34 150.2 101 76.2
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 2.4e-34 149.1 112 72.3
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 2.4e-34 149.1 112 72.3
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 6.9e-34 147.5 105 67.6
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 9.0e-34 147.1 120 69.2
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 9.0e-34 147.1 108 71.3
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 3.4e-33 145.2 101 73.3
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 2.2e-32 142.5 114 68.4
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 2.9e-32 142.1 115 65.2
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.1e-31 140.2 110 68.2
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 1.9e-31 139.4 99 76.8
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 3.2e-31 138.7 101 74.3
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 9.3e-31 137.1 96 70.8
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 9.3e-31 137.1 96 70.8
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 2.1e-30 136.0 98 73.5
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 6.0e-30 134.4 112 66.1
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 6.0e-30 134.4 102 74.5
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.3e-29 133.3 118 60.2
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.3e-29 133.3 129 59.7
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.3e-29 133.3 129 59.7
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 1.3e-29 133.3 110 66.4
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.8e-29 132.9 106 68.9
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 3.0e-29 132.1 109 66.1
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 6.7e-29 131.0 102 65.7
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 1.1e-28 130.2 107 66.4
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.5e-28 129.8 112 61.6
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 1.9e-28 129.4 109 65.1
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 5.6e-28 127.9 109 64.2
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 5.6e-28 127.9 120 62.5
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.3e-27 126.7 119 61.3
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 2.8e-27 125.6 126 59.5
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 1.1e-26 123.6 98 69.4
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 3.1e-26 122.1 122 63.1
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 3.1e-26 122.1 115 60.0
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 4.0e-26 121.7 128 57.8
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.8e-25 117.9 95 69.5
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 5.8e-25 117.9 95 69.5
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 7.6e-25 117.5 112 60.7
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 1.0e-24 117.1 115 59.1
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 1.3e-24 116.7 95 63.2
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 3.8e-24 115.2 122 55.7
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.8e-24 115.2 122 55.7
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.8e-24 115.2 122 55.7
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.8e-24 115.2 122 55.7
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.8e-24 115.2 122 55.7
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 6.5e-24 114.4 111 59.5
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 1.1e-23 113.6 106 61.3
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 1.4e-23 113.2 79 73.4
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 5.5e-23 111.3 118 55.1
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 5.5e-23 111.3 118 55.1
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 7.1e-23 110.9 106 60.4
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 1.6e-22 109.8 121 55.4
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 6.0e-22 107.8 117 55.6
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 6.0e-22 107.8 117 55.6
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 7.9e-22 107.5 117 52.1
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 6.7e-21 104.4 118 55.1
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 6.7e-21 104.4 118 51.7
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 8.7e-21 104.0 126 49.2
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 8.7e-21 104.0 126 49.2
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 8.7e-21 104.0 105 56.2
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 1.5e-20 103.2 119 53.8
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 2.5e-20 102.4 121 52.1
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 2.5e-20 102.4 121 52.1
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 4.3e-20 101.7 102 56.9
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 4.3e-20 101.7 104 54.8
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 5.7e-20 101.3 113 54.0
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 5.7e-20 101.3 107 56.1
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 7.4e-20 100.9 108 57.4
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.3e-19 100.1 126 48.4
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 2.2e-19 99.4 131 49.6
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 2.2e-19 99.4 131 49.6
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 2.2e-19 99.4 131 49.6
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 2.2e-19 99.4 119 47.1
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 2.8e-19 99.0 84 65.5
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 2.8e-19 99.0 112 53.6
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 3.7e-19 98.6 89 58.4
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 3.7e-19 98.6 108 51.9
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 3.7e-19 98.6 138 45.7
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 8.2e-19 97.4 131 47.3
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 8.2e-19 97.4 100 57.0
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 1.1e-18 97.1 109 50.5
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 1.4e-18 96.7 103 57.3
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 1.8e-18 96.3 127 46.5
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 1.8e-18 96.3 127 46.5
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 4.1e-18 95.1 136 44.9
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 5.3e-18 94.7 99 52.5
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 5.3e-18 94.7 103 56.3
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 5.3e-18 94.7 102 50.0
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 6.9e-18 94.4 102 55.9
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.6e-17 92.4 95 57.9
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 4.5e-17 91.7 93 51.6
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 7.6e-17 90.9 101 54.5
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 2.2e-16 89.4 103 51.5
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 2.9e-16 89.0 123 47.2
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 2.9e-16 89.0 101 54.5
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 2.9e-16 89.0 100 54.0
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 8.5e-16 87.4 121 47.1
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 1.9e-15 86.3 127 45.7
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 3.2e-15 85.5 115 44.3
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 4.2e-15 85.1 110 50.0
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 4.2e-15 85.1 110 50.0
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 9.4e-15 84.0 102 50.0
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 9.4e-15 84.0 102 50.0
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.2e-14 83.6 112 49.1
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 1.6e-14 83.2 97 49.5
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.6e-14 83.2 111 49.5
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 2.1e-14 82.8 110 49.1
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 2.7e-14 82.4 118 48.3
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 3.6e-14 82.0 115 43.5
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 4.6e-14 81.6 115 46.1
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 4.6e-14 81.6 115 43.5
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 6.1e-14 81.3 98 46.9
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.0e-13 80.5 113 47.8
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.4e-13 80.1 104 47.1
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 3.0e-13 79.0 98 41.8
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 5.1e-13 78.2 102 45.1
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 6.7e-13 77.8 127 40.2
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 6.7e-13 77.8 127 40.2
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 8.8e-13 77.4 74 54.1
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 8.8e-13 77.4 109 45.9
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 1.1e-12 77.0 109 45.9
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 2.5e-12 75.9 114 43.0
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 9.7e-12 73.9 133 45.1
Ah.12g062580 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.3e-11 73.6 125 40.8
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 3.7e-11 72.0 71 53.5
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 6.3e-11 71.2 100 45.0
SEGI_26556 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 1.8e-10 69.7 122 40.2
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 6.9e-10 67.8 112 41.1
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 1.2e-09 67.0 102 43.1
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 1.5e-09 66.6 95 46.3
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 1.0e-08 63.9 119 37.8
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 1.0e-08 63.9 119 37.8
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 1.7e-08 63.2 98 41.8
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 5.0e-08 61.6 95 41.1
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 1.1e-07 60.5 98 39.8
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 1.9e-07 59.7 102 36.3
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 3.2e-07 58.9 37 83.8
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 6.1e-06 54.7 49 57.1


User provided reference genes

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