Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_11747 Corylus avellana HOM05D000147 ORTHO05D025190 3.4e-180 634.8 306 100.0
Cfa008733 Carpinus fangiana HOM05D000147 ORTHO05D005311 8.4e-78 294.7 161 91.3
QL03p044068 Quercus lobata HOM05D000147 ORTHO05D005311 2.5e-69 266.5 166 80.7
CiPaw.06G059800 Carya illinoinensis HOM05D000147 ORTHO05D005311 5.5e-69 265.4 162 82.7
CiPaw.05G168400 Carya illinoinensis HOM05D000147 ORTHO05D005311 3.4e-63 246.1 161 77.6
Ciclev10030948m.g Citrus clementina HOM05D000147 ORTHO05D005311 7.1e-61 238.4 168 71.4
Thecc.02G160800 Theobroma cacao HOM05D000147 ORTHO05D005311 4.6e-60 235.7 164 72.0
Actinidia04308 Actinidia chinensis HOM05D000147 ORTHO05D005311 1.8e-59 233.8 168 71.4
VMungo1127G1912 Vigna mungo HOM05D000147 ORTHO05D005311 3.9e-59 232.6 201 59.2
Gohir.D12G137800 Gossypium hirsutum HOM05D000147 ORTHO05D005311 6.7e-59 231.9 163 70.6
Lj6C720G7 Lonicera japonica HOM05D000147 ORTHO05D005311 8.7e-59 231.5 162 72.8
Manes.02G219800 Manihot esculenta HOM05D000147 ORTHO05D005311 1.9e-58 230.3 163 70.6
Gorai.008G149300 Gossypium raimondii HOM05D000147 ORTHO05D005311 2.5e-58 229.9 163 69.9
Gohir.A12G134200 Gossypium hirsutum HOM05D000147 ORTHO05D005311 7.4e-58 228.4 163 69.9
GSVIVG01012038001 Vitis vinifera HOM05D000147 ORTHO05D005311 7.4e-58 228.4 216 56.0
CANSAT64G1147 Cannabis sativa HOM05D000147 ORTHO05D005311 1.6e-57 227.3 168 66.1
Glyma.12G027500 Glycine max HOM05D000147 ORTHO05D005311 1.6e-57 227.3 167 67.1
Phvul.011G030700 Phaseolus vulgaris HOM05D000147 ORTHO05D005311 1.6e-57 227.3 206 56.8
Duzib248G1409 Durio zibethinus HOM05D000147 ORTHO05D005311 2.2e-57 226.9 164 68.9
Nn5g28890 Nelumbo nucifera HOM05D000147 ORTHO05D005311 2.8e-57 226.5 166 67.5
Ca_19029_v3 Cicer arietinum L. HOM05D000147 ORTHO05D005311 4.8e-57 225.7 162 67.3
Prupe.1G346700 Prunus persica HOM05D000147 ORTHO05D005311 4.8e-57 225.7 163 69.3
FAN17G2876 Fragaria x ananassa HOM05D000147 ORTHO05D005311 6.3e-57 225.3 170 67.1
Potri.007G069800 Populus trichocarpa HOM05D000147 ORTHO05D005311 6.3e-57 225.3 164 68.9
CAN.G157.20 Capsicum annuum HOM05D000147 ORTHO05D005311 8.2e-57 224.9 163 68.7
MD13G1006500 Malus domestica HOM05D000147 ORTHO05D005311 8.2e-57 224.9 163 69.9
MD16G1001500 Malus domestica HOM05D000147 ORTHO05D005311 8.2e-57 224.9 163 69.9
Sc10g0006770 Simmondsia chinensis HOM05D000147 ORTHO05D005311 1.1e-56 224.6 162 69.1
PGR142G0037 Punica granatum HOM05D000147 ORTHO05D005311 1.4e-56 224.2 168 65.5
Duzib132G0553 Durio zibethinus HOM05D000147 ORTHO05D005311 1.8e-56 223.8 164 67.7
Glyma.11G101600 Glycine max HOM05D000147 ORTHO05D005311 1.8e-56 223.8 162 66.7
ClCG09G004590 Citrullus lanatus HOM05D000147 ORTHO05D005311 3.1e-56 223.0 167 64.7
Lalb_Chr19g0139371 Lupinus albus HOM05D000147 ORTHO05D005311 4.1e-56 222.6 162 68.5
Sabra05G0077400 Salix brachista HOM05D000147 ORTHO05D005311 4.1e-56 222.6 166 67.5
FAN07G2667 Fragaria x ananassa HOM05D000147 ORTHO05D005311 6.9e-56 221.9 169 66.9
Potri.005G093300 Populus trichocarpa HOM05D000147 ORTHO05D005311 9.0e-56 221.5 164 68.9
RcHm_v2.0_Chr4g0446611 Rosa chinensis HOM05D000147 ORTHO05D005311 1.2e-55 221.1 170 65.3
FAN12G4124 Fragaria x ananassa HOM05D000147 ORTHO05D005311 1.5e-55 220.7 170 67.1
TAR628G0689 Trochodendron aralioides HOM05D000147 ORTHO05D005311 1.5e-55 220.7 162 69.1
Solyc02g014350.4 Solanum lycopersicum HOM05D000147 ORTHO05D005311 2.0e-55 220.3 163 65.6
vmacro10897 Vaccinium macrocarpon HOM05D000147 ORTHO05D005311 2.0e-55 220.3 168 65.5
ATR0564G231 Amborella trichopoda HOM05D000147 ORTHO05D005311 2.6e-55 219.9 164 65.9
Atru.chr11.1175 Acer truncatum HOM05D000147 ORTHO05D005311 3.4e-55 219.5 161 72.0
TAR381G0407 Trochodendron aralioides HOM05D000147 ORTHO05D005311 4.5e-55 219.2 168 66.7
FvH4_4g36860 Fragaria vesca HOM05D000147 ORTHO05D005311 5.9e-55 218.8 165 67.9
Hund08554 Selenicereus undatus HOM05D000147 ORTHO05D005311 7.7e-55 218.4 170 65.3
CSS0012305 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D005311 1.3e-54 217.6 163 68.1
AUR62017703 Chenopodium quinoa HOM05D000147 ORTHO05D005311 1.7e-54 217.2 170 65.9
Lalb_Chr03g0024801 Lupinus albus HOM05D000147 ORTHO05D005311 1.7e-54 217.2 164 65.9
Sopen02g003380 Solanum pennellii HOM05D000147 ORTHO05D005311 1.7e-54 217.2 163 65.0
arahy.Tifrunner.gnm1.ann1.6GN5UX Arachis hypogaea HOM05D000147 ORTHO05D005311 2.2e-54 216.9 168 63.7
arahy.Tifrunner.gnm1.ann1.7MKI8I Arachis hypogaea HOM05D000147 ORTHO05D005311 2.2e-54 216.9 163 65.6
Medtr4g074920 Medicago truncatula HOM05D000147 ORTHO05D005311 2.2e-54 216.9 160 66.2
Carub.0003s1961 Capsella rubella HOM05D000147 ORTHO05D005311 2.9e-54 216.5 163 67.5
Cc11_g00140 Coffea canephora HOM05D000147 ORTHO05D005311 3.8e-54 216.1 167 65.3
Aqoxy6G00466 Aquilegia oxysepala HOM05D000147 ORTHO05D005311 5.0e-54 215.7 187 57.8
Lj3g0018243 Lotus japonicus HOM05D000147 ORTHO05D005311 5.0e-54 215.7 167 65.3
TPR.G32339 Trifolium pratense HOM05D000147 ORTHO05D005311 8.5e-54 214.9 160 65.6
TWI77G0661 Tripterygium wilfordii HOM05D000147 ORTHO05D005311 8.5e-54 214.9 168 64.3
Sabra07G0057300 Salix brachista HOM05D000147 ORTHO05D005311 1.1e-53 214.5 171 66.1
CsaV3_7G030550 Cucumis sativus L. HOM05D000147 ORTHO05D005311 1.4e-53 214.2 167 63.5
HanXRQChr06g0171471 Helianthus annuus HOM05D000147 ORTHO05D005311 2.5e-53 213.4 162 65.4
AL1G57780 Arabidopsis lyrata HOM05D000147 ORTHO05D005311 3.2e-53 213.0 167 62.9
Aa31LG8G6540 Aethionema arabicum HOM05D000147 ORTHO05D005311 4.2e-53 212.6 170 65.3
CARHR040190 Cardamine hirsuta HOM05D000147 ORTHO05D005311 5.5e-53 212.2 167 62.9
Eucgr.G02569 Eucalyptus grandis HOM05D000147 ORTHO05D005311 7.2e-53 211.8 171 62.0
MSTRG.23131 Avicennia marina HOM05D000147 ORTHO05D005311 1.2e-52 211.1 161 67.1
Migut.I00007 Erythranthe guttata HOM05D000147 ORTHO05D005311 1.2e-52 211.1 166 63.9
C01p44370 Brassica napus HOM05D000147 ORTHO05D005311 1.6e-52 210.7 173 61.3
BolC1t04402H Brassica oleracea HOM05D000147 ORTHO05D005311 1.6e-52 210.7 173 61.3
MELO3C023601.2 Cucumis melo HOM05D000147 ORTHO05D005311 1.6e-52 210.7 171 62.0
Carub.0001s3929 Capsella rubella HOM05D000147 ORTHO05D005311 2.7e-52 209.9 167 61.1
AL3G33200 Arabidopsis lyrata HOM05D000147 ORTHO05D005311 3.6e-52 209.5 162 66.7
Sp3g17770 Schrenkiella parvula HOM05D000147 ORTHO05D005311 3.6e-52 209.5 162 64.2
BraA01t03579Z Brassica rapa HOM05D000147 ORTHO05D005311 4.6e-52 209.1 173 61.3
CARHR095260 Cardamine hirsuta HOM05D000147 ORTHO05D005311 4.6e-52 209.1 162 66.0
Lsat_1_v5_gn_2_97540 Lactuca sativa HOM05D000147 ORTHO05D005311 4.6e-52 209.1 161 65.2
AT3G19740 Arabidopsis thaliana HOM05D000147 ORTHO05D005311 1.0e-51 208.0 162 66.0
ECA246G2622 Erigeron canadensis HOM05D000147 ORTHO05D005311 1.0e-51 208.0 167 62.9
Sed0010099 Sechium edule HOM05D000147 ORTHO05D005311 1.4e-51 207.6 162 64.8
TWI74G0983 Tripterygium wilfordii HOM05D000147 ORTHO05D005311 1.8e-51 207.2 162 64.8
BolC3t21264H Brassica oleracea HOM05D000147 ORTHO05D005311 2.3e-51 206.8 167 61.7
C03p89500 Brassica napus HOM05D000147 ORTHO05D005311 3.9e-51 206.1 167 61.1
Aa31LG10G4010 Aethionema arabicum HOM05D000147 ORTHO05D005311 5.1e-51 205.7 167 61.7
A08p03310 Brassica napus HOM05D000147 ORTHO05D005311 5.1e-51 205.7 167 61.1
BraA08t32364Z Brassica rapa HOM05D000147 ORTHO05D005311 5.1e-51 205.7 167 61.1
THA.LOC104826507 Tarenaya hassleriana HOM05D000147 ORTHO05D005311 5.1e-51 205.7 167 62.9
Psat7g173240 Pisum sativum HOM05D000147 ORTHO05D005311 8.8e-51 204.9 160 63.1
A01p34960 Brassica napus HOM05D000147 ORTHO05D005311 1.1e-50 204.5 162 62.3
Thhalv10011206m.g Eutrema salsugineum HOM05D000147 ORTHO05D005311 1.5e-50 204.1 167 59.9
EL10Ac9g22954 Beta vulgaris HOM05D000147 ORTHO05D005311 2.0e-50 203.8 161 67.7
AT1G50140 Arabidopsis thaliana HOM05D000147 ORTHO05D005311 3.3e-50 203.0 162 61.1
Sed0001066 Sechium edule HOM05D000147 ORTHO05D005311 7.4e-50 201.8 162 61.7
Oeu016388.3 Olea europaea HOM05D000147 ORTHO05D005311 9.7e-50 201.4 167 62.3
Ah.01g012370 Amaranthus hybridus HOM05D000147 ORTHO05D005311 3.7e-49 199.5 170 61.2
Sp1g37010 Schrenkiella parvula HOM05D000147 ORTHO05D005311 6.3e-49 198.7 167 61.1
CDE04G2917 Ceratophyllum demersum HOM05D000147 ORTHO05D005311 8.2e-49 198.4 162 56.8
Rhsim09G0074800 Rhododendron simsii HOM05D000147 ORTHO05D005311 8.2e-49 198.4 155 63.2
HanXRQChr15g0472181 Helianthus annuus HOM05D000147 ORTHO05D005311 1.1e-48 198.0 200 52.5
SGA_v2.0_scaffold90G27912 Striga asiatica HOM05D000147 ORTHO05D005311 3.1e-48 196.4 192 55.2
Ah.01g001490 Amaranthus hybridus HOM05D000147 ORTHO05D005311 5.3e-48 195.7 156 66.0
MSTRG.11456 Avicennia marina HOM05D000147 ORTHO05D005311 9.1e-48 194.9 159 64.2
AUR62032985 Chenopodium quinoa HOM05D000147 ORTHO05D005311 7.7e-47 191.8 148 67.6
Thhalv10019988m.g Eutrema salsugineum HOM05D000147 ORTHO05D005311 8.5e-46 188.3 162 58.0
DCAR_002570 Daucus carota HOM05D000147 ORTHO05D005311 3.2e-45 186.4 168 58.3
BcaC01g01214 Brassica carinata HOM05D000147 ORTHO05D005311 3.6e-44 183.0 152 60.5
Peaxi162Scf00363g00615 Petunia axillaris HOM05D000147 ORTHO05D005311 8.8e-43 178.3 138 64.5
SEGI_34337 Sequoiadendron giganteum HOM05D000147 ORTHO05D005311 1.1e-42 177.9 174 48.9
PSO170G3341 Papaver somniferum HOM05D000147 ORTHO05D005311 1.5e-42 177.6 160 58.8
Nitab4.5_0000739g0020 Nicotiana tabacum HOM05D000147 ORTHO05D005311 5.7e-42 175.6 100 83.0
Nitab4.5_0008057g0020 Nicotiana tabacum HOM05D000147 ORTHO05D005311 5.7e-42 175.6 100 83.0
PSO210G5900 Papaver somniferum HOM05D000147 ORTHO05D005311 9.7e-42 174.9 159 58.5
PSO675G6018 Papaver somniferum HOM05D000147 ORTHO05D005311 7.0e-40 168.7 161 54.7
Zm00001eb194420 Zea mays HOM05D000147 ORTHO05D005311 1.2e-39 167.9 168 50.6
unitig_26.g9622 Utricularia gibba HOM05D000147 ORTHO05D005311 4.5e-39 166.0 146 56.8
PSO541G5327 Papaver somniferum HOM05D000147 ORTHO05D005311 1.3e-38 164.5 173 52.0
LjContig00430g0004045 Lotus japonicus HOM05D000147 ORTHO05D025190 2.9e-38 163.3 152 59.2
SHI31059 Sapria himalayana HOM05D000147 ORTHO05D005311 3.8e-38 162.9 151 58.9
LjContig00460g0026987 Lotus japonicus HOM05D000147 ORTHO05D025190 1.1e-37 161.4 152 58.6
Lj3g0002274 Lotus japonicus HOM05D000147 ORTHO05D025190 3.2e-37 159.8 140 60.7
COL.COLO4_08994 Corchorus olitorius HOM05D000147 ORTHO05D005311 9.4e-37 158.3 162 57.4
Lj3g0004493 Lotus japonicus HOM05D000147 ORTHO05D025190 9.4e-37 158.3 140 60.0
Lsat_1_v5_gn_5_32401 Lactuca sativa HOM05D000147 ORTHO05D005311 5.7e-34 149.1 160 51.9
Lj3g0009641 Lotus japonicus HOM05D000147 ORTHO05D005311 2.0e-31 140.6 143 51.0
Lsat_1_v5_gn_3_18480 Lactuca sativa HOM05D000147 ORTHO05D005311 8.8e-27 125.2 161 46.0
Migut.D01932 Erythranthe guttata HOM05D000147 ORTHO05D005311 1.2e-26 124.8 153 42.5
Migut.D01933 Erythranthe guttata HOM05D000147 ORTHO05D005311 2.0e-26 124.0 147 44.9
Lsat_1_v5_gn_8_102480 Lactuca sativa HOM05D001455 ORTHO05D005311 4.1e-24 116.3 101 58.4
SGA_v2.0_scaffold7G04135 Striga asiatica HOM05D000147 ORTHO05D406079 3.5e-23 113.2 149 44.3
Pp3c5_8900 Physcomitrium patens HOM05D000147 ORTHO05D005311 1.4e-16 91.3 175 34.9
SalBow2G1925 Salvia bowleyana HOM05D000147 ORTHO05D005311 2.0e-15 87.4 148 36.5
vmacro14249 Vaccinium macrocarpon HOM05D000147 ORTHO05D426508 3.5e-15 86.7 104 50.0
Mapoly0092s0039 Marchantia polymorpha HOM05D000147 ORTHO05D005311 7.2e-13 79.0 150 33.3
HPP92_013075 Vanilla planifolia HOM05D000147 ORTHO05D005311 2.8e-12 77.0 115 40.9
Lsat_1_v5_gn_1_98780 Lactuca sativa HOM05D000147 ORTHO05D005311 6.1e-12 75.9 84 54.8
Pp3c18_15920 Physcomitrium patens HOM05D000147 ORTHO05D005311 1.4e-08 64.7 79 36.7
SMO203G0080 Selaginella moellendorffii HOM05D000147 ORTHO05D005311 9.2e-08 62.0 69 42.0
SGA_v2.0_scaffold52G19089 Striga asiatica HOM05D000147 ORTHO05D406533 9.2e-08 62.0 166 31.3
SMO358G0619 Selaginella moellendorffii HOM05D000147 ORTHO05D005311 1.6e-07 61.2 79 38.0
SMO198G0041 Selaginella moellendorffii HOM05D000147 ORTHO05D377854 3.5e-07 60.1 55 47.3


User provided reference genes

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