Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 2.0e-206 722.2 376 100.0
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 3.7e-160 568.5 375 79.5
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 6.5e-157 557.8 377 78.0
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 7.5e-137 491.1 370 69.7
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.1e-132 477.2 380 67.9
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 1.6e-131 473.4 380 67.4
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 1.4e-130 470.3 379 67.8
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 1.4e-127 460.3 370 65.7
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 1.4e-127 460.3 370 65.7
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.1e-126 456.4 376 65.4
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 6.6e-125 451.4 370 63.8
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 1.5e-124 450.3 369 64.5
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 5.6e-124 448.4 376 64.9
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 3.6e-123 445.7 383 63.7
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 6.2e-123 444.9 369 64.5
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 1.4e-122 443.7 377 63.7
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.5e-121 440.3 385 61.8
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.3e-120 437.2 369 63.1
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.9e-120 436.0 421 59.6
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 3.7e-120 435.6 379 63.6
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 1.1e-119 434.1 341 68.3
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.2e-119 432.6 369 63.1
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 1.2e-118 430.6 381 63.0
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.1e-118 429.9 369 62.3
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 5.1e-117 425.2 386 60.1
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.3e-116 422.2 369 61.0
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.2e-115 420.6 386 59.8
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 1.1e-114 417.5 379 60.7
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 2.4e-114 416.4 367 62.1
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.4e-114 416.4 369 60.7
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 4.0e-114 415.6 376 59.6
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 1.2e-113 414.1 366 62.0
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.0e-113 413.3 369 60.2
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.4e-113 412.1 369 60.2
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 7.6e-113 411.4 375 60.8
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.7e-112 410.2 369 60.2
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.9e-112 409.5 369 59.9
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 3.8e-112 409.1 380 59.5
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 4.6e-110 402.1 377 57.6
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 3.9e-109 399.1 330 64.2
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 1.1e-108 397.5 377 57.0
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 3.3e-108 396.0 375 59.7
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 4.3e-108 395.6 378 57.7
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 2.1e-107 393.3 376 56.6
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.4e-106 390.6 375 58.7
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 2.4e-106 389.8 353 59.5
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 3.1e-106 389.4 374 57.8
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 9.0e-106 387.9 381 57.2
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 1.9e-103 380.2 322 62.4
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 4.2e-103 379.0 376 56.9
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 5.4e-103 378.6 376 57.2
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 5.4e-103 378.6 369 58.8
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 7.1e-103 378.3 376 56.1
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 7.9e-102 374.8 372 57.5
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 3.0e-101 372.9 376 54.0
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 3.9e-101 372.5 340 59.4
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 2.8e-99 366.3 376 55.3
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 6.2e-99 365.2 376 52.7
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 5.3e-98 362.1 364 55.5
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 1.5e-97 360.5 368 54.3
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 1.5e-97 360.5 321 62.6
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 2.2e-96 356.7 365 54.2
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 4.9e-96 355.5 358 55.0
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 4.9e-96 355.5 382 53.9
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.4e-95 354.0 368 54.9
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 5.5e-95 352.1 370 54.6
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 5.5e-95 352.1 365 55.6
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 1.6e-94 350.5 378 52.4
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 7.9e-94 348.2 368 54.1
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 5.6e-92 342.0 370 54.1
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 9.6e-92 341.3 381 52.2
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 3.7e-91 339.3 368 52.4
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 4.8e-91 339.0 368 53.3
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 6.2e-91 338.6 370 53.8
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 8.1e-91 338.2 371 53.1
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 3.1e-90 336.3 324 57.1
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 4.0e-90 335.9 371 53.6
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 5.3e-90 335.5 313 58.8
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 1.2e-89 334.3 351 54.4
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.2e-89 334.3 373 50.1
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 5.8e-89 332.0 369 51.5
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 7.6e-89 331.6 369 51.8
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 1.7e-88 330.5 331 55.9
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 1.1e-87 327.8 369 51.5
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 1.4e-87 327.4 368 50.8
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 7.1e-87 325.1 372 51.9
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 9.3e-87 324.7 379 51.2
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 3.0e-85 319.7 372 51.3
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 3.9e-85 319.3 355 52.7
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 3.9e-85 319.3 369 50.9
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 3.9e-85 319.3 369 50.9
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 3.9e-85 319.3 383 49.9
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 5.7e-84 315.5 367 49.3
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 9.6e-84 314.7 370 51.1
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 9.6e-84 314.7 370 51.1
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 9.6e-84 314.7 368 50.0
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 1.3e-83 314.3 369 49.9
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 1.3e-83 314.3 384 52.1
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 1.6e-83 313.9 368 50.5
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 2.8e-83 313.2 369 50.9
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 1.8e-82 310.5 372 50.3
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 1.8e-82 310.5 370 50.8
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 1.8e-82 310.5 369 50.7
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 1.8e-82 310.5 370 50.8
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 1.8e-82 310.5 370 51.1
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 1.8e-82 310.5 368 50.8
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 1.8e-82 310.5 369 50.7
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 1.8e-82 310.5 380 48.2
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 2.4e-82 310.1 368 50.0
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 6.9e-82 308.5 377 48.5
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 1.5e-81 307.4 368 50.0
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 1.5e-81 307.4 369 49.9
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 7.6e-81 305.1 369 49.9
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 1.3e-80 304.3 405 50.1
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 5.0e-80 302.4 307 55.0
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 2.1e-78 297.0 293 56.3
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 3.5e-78 296.2 384 45.6
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 6.1e-78 295.4 382 44.2
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 6.3e-75 285.4 332 51.8
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 5.9e-73 278.9 333 48.3
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.7e-72 277.3 349 47.6
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 7.9e-70 268.5 280 52.9
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 2.3e-69 266.9 351 44.2
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 1.7e-67 260.8 349 43.3
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 2.9e-64 250.0 326 44.2
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 6.5e-64 248.8 375 41.3
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 6.3e-59 232.3 331 43.5
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.6e-57 227.6 282 47.9
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 1.1e-55 221.5 384 38.5
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 7.2e-55 218.8 196 60.2
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 1.0e-37 161.8 130 67.7
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.0e-37 161.8 137 58.4
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.4e-36 156.8 139 55.4
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.1e-34 149.8 130 57.7
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 4.1e-34 149.8 131 61.8
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 4.5e-33 146.4 126 57.9
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 5.9e-33 146.0 396 33.1
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 8.9e-29 132.1 396 31.3
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 1.5e-28 131.3 101 61.4
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 4.9e-27 126.3 227 37.4
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 9.2e-26 122.1 157 43.9
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 3.5e-25 120.2 262 32.4
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 3.5e-25 120.2 383 30.8
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.0e-21 108.6 379 27.7
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 5.8e-20 102.8 383 27.7
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 4.1e-18 96.7 245 30.2
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 3.0e-16 90.5 139 36.7
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.6e-14 84.7 65 61.5
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.6e-14 84.7 65 61.5
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 4.0e-13 80.1 64 60.9
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 1.2e-12 78.6 99 48.5
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 3.2e-10 70.5 82 43.9
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 6.0e-09 66.2 66 57.6
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 7.8e-09 65.9 66 56.1
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 7.8e-09 65.9 66 56.1
Oeu022108.1 Olea europaea HOM05D002428 ORTHO05D005085 1.5e-07 61.6 58 56.9
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 1.5e-07 61.6 52 59.6
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 1.5e-07 61.6 52 59.6
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 4.3e-07 60.1 99 40.4
Cre17.g708350 Chlamydomonas reinhardtii HOM05D002428 ORTHO05D005085 1.6e-06 58.2 367 21.3


User provided reference genes

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